Wall clock time and date at job start Sat Apr 11 2020 00:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35708 * 116.99603 * 2 1 4 4 C 1.38446 * 120.11954 * 0.27679 * 3 2 1 5 5 C 1.38692 * 120.03405 * 180.25261 * 4 3 2 6 6 O 1.35791 * 119.85656 * 179.76682 * 5 4 3 7 7 C 1.34747 * 116.99742 * 258.80128 * 6 5 4 8 8 O 1.21467 * 120.00419 * 355.18048 * 7 6 5 9 9 C 1.47750 * 119.99749 * 175.45421 * 7 6 5 10 10 C 1.39973 * 120.02961 * 359.44372 * 9 7 6 11 11 C 1.38319 * 120.35263 * 179.74175 * 10 9 7 12 12 C 1.37760 * 120.41651 * 0.56503 * 11 10 9 13 13 C 1.40756 * 120.05401 * 359.69453 * 12 11 10 14 14 C 1.41441 * 120.17877 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99554 * 151.80028 * 14 13 12 16 16 C 1.39933 * 120.00031 * 331.80871 * 14 13 12 17 17 N 1.30832 * 119.99884 * 163.82601 * 16 14 13 18 18 Si 1.86799 * 120.00055 * 343.82585 * 16 14 13 19 19 H 1.48500 * 109.47041 * 94.05647 * 18 16 14 20 20 H 1.48501 * 109.47372 * 214.05795 * 18 16 14 21 21 H 1.48503 * 109.46916 * 334.05864 * 18 16 14 22 22 C 1.39053 * 120.03302 * 179.72907 * 9 7 6 23 23 C 1.39114 * 120.27786 * 359.49312 * 5 4 3 24 24 C 1.37624 * 120.23697 * 0.22998 * 23 5 4 25 25 C 1.39820 * 119.95813 * 0.02562 * 24 23 5 26 26 C 1.43210 * 120.13412 * 180.02562 * 25 24 23 27 27 N 3.53181 * 165.87641 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47223 * 299.99467 * 1 2 3 29 29 H 1.09001 * 109.47249 * 60.00099 * 1 2 3 30 30 H 1.09006 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.97789 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.82666 * 0.03215 * 10 9 7 33 33 H 1.07994 * 119.79569 * 180.28462 * 11 10 9 34 34 H 1.08003 * 119.97948 * 179.71640 * 12 11 10 35 35 H 0.96996 * 119.99466 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.20560 * 359.95036 * 22 9 7 37 37 H 1.07994 * 119.88038 * 180.25018 * 23 5 4 38 38 H 1.08006 * 120.02229 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 1.2933 2.3718 0.0058 5 6 1.9247 3.6067 0.0005 6 8 1.1839 4.7447 0.0014 7 6 1.0404 5.3821 -1.1771 8 8 1.6334 4.9836 -2.1594 9 6 0.1665 6.5696 -1.2730 10 6 -0.5218 7.0260 -0.1429 11 6 -1.3375 8.1401 -0.2239 12 6 -1.4912 8.8065 -1.4197 13 6 -0.8115 8.3594 -2.5683 14 6 -0.9670 9.0419 -3.7974 15 1 -0.1707 9.0286 -4.5268 16 6 -2.1524 9.7345 -4.0680 17 7 -2.1898 10.6141 -5.0357 18 14 -3.6816 9.4029 -3.0476 19 1 -3.7562 10.3834 -1.9348 20 1 -4.8869 9.5345 -3.9049 21 1 -3.6171 8.0273 -2.4918 22 6 0.0224 7.2313 -2.4875 23 6 3.3137 3.6843 0.0000 24 6 4.0720 2.5358 0.0000 25 6 3.4458 1.2857 -0.0001 26 6 4.2311 0.0882 0.0005 27 7 4.8540 -0.8618 0.0004 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2148 2.3171 0.0107 32 1 -0.4117 6.5082 0.7985 33 1 -1.8607 8.4871 0.6548 34 1 -2.1335 9.6730 -1.4760 35 1 -3.0114 11.0944 -5.2230 36 1 0.5484 6.8807 -3.3631 37 1 3.7986 4.6492 -0.0001 38 1 5.1501 2.6001 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195167412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:40 Heat of formation + Delta-G solvation = -47.661818 kcal Electronic energy + Delta-G solvation = -25043.037917 eV Core-core repulsion = 21201.926626 eV Total energy + Delta-G solvation = -3841.111291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52472 -41.17373 -39.67579 -38.68155 -38.01607 -37.07789 -35.59284 -32.84282 -32.08761 -31.77292 -31.47249 -28.36538 -27.35828 -26.26805 -24.34663 -23.61008 -22.56105 -22.18855 -20.43645 -19.94000 -19.34755 -18.36349 -18.11508 -17.59554 -17.23325 -16.89731 -16.54395 -16.47079 -15.82311 -15.61372 -15.45490 -15.07631 -14.93939 -14.70287 -14.59274 -14.41675 -14.17684 -13.87366 -13.54023 -13.42866 -13.29177 -13.10755 -12.91760 -12.69971 -12.53862 -12.36413 -12.17916 -12.07137 -11.83115 -11.68061 -11.51762 -11.05549 -10.14368 -9.73242 -9.65592 -9.49502 -8.90905 -6.56054 -0.64674 -0.11142 0.14531 0.72591 1.27452 1.32280 1.44106 1.46516 1.55325 1.58645 1.94314 2.05850 2.11314 2.58802 2.66807 2.73832 3.40111 3.51288 3.63968 3.87500 3.96016 4.17597 4.25319 4.29432 4.35479 4.40401 4.43614 4.60511 4.66777 4.73076 4.83554 4.87783 4.97811 5.07314 5.11089 5.14366 5.35518 5.45881 5.62450 5.68912 5.82046 6.02933 6.07398 6.28075 6.39778 6.60173 6.69607 6.73619 8.17439 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.002595 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.489526 B =10788.236167 C =11069.834216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.191 3.809 4 C -0.212 4.212 5 C 0.138 3.862 6 O -0.283 6.283 7 C 0.523 3.477 8 O -0.517 6.517 9 C -0.100 4.100 10 C -0.162 4.162 11 C -0.085 4.085 12 C -0.216 4.216 13 C 0.063 3.937 14 C -0.481 4.481 15 H 0.054 0.946 16 C 0.043 3.957 17 N -0.848 5.848 18 Si 0.967 3.033 19 H -0.247 1.247 20 H -0.282 1.282 21 H -0.245 1.245 22 C -0.154 4.154 23 C -0.163 4.163 24 C 0.000 4.000 25 C -0.075 4.075 26 C 0.288 3.712 27 N -0.456 5.456 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.296 0.704 36 H 0.101 0.899 37 H 0.153 0.847 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -13.253 14.425 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.141 3.859 4 C -0.231 4.231 5 C 0.096 3.904 6 O -0.199 6.199 7 C 0.371 3.629 8 O -0.405 6.405 9 C -0.101 4.101 10 C -0.181 4.181 11 C -0.102 4.102 12 C -0.235 4.235 13 C 0.061 3.939 14 C -0.510 4.510 15 H 0.073 0.927 16 C -0.172 4.172 17 N -0.473 5.473 18 Si 0.789 3.211 19 H -0.172 1.172 20 H -0.209 1.209 21 H -0.168 1.168 22 C -0.173 4.173 23 C -0.181 4.181 24 C -0.020 4.020 25 C -0.080 4.080 26 C -0.027 4.027 27 N -0.133 5.133 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.170 0.830 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.677 -14.863 13.913 20.533 hybrid contribution -0.837 0.750 -0.616 1.281 sum 1.841 -14.113 13.296 19.477 Atomic orbital electron populations 1.23548 0.75197 1.06366 1.03131 1.86094 1.24495 1.25551 1.87254 1.18628 0.90223 0.84711 0.92296 1.21249 1.02281 0.89812 1.09736 1.18818 0.90477 0.84297 0.96831 1.84636 1.65820 1.35319 1.34102 1.21832 0.78894 0.82417 0.79714 1.90825 1.45826 1.66181 1.37694 1.18802 1.00732 0.94475 0.96099 1.21139 1.00404 0.99194 0.97413 1.21064 0.97471 0.94581 0.97132 1.21490 1.05955 1.02521 0.93520 1.17719 0.92246 0.90685 0.93289 1.19471 1.02357 1.27344 1.01863 0.92743 1.26935 1.03407 0.91074 0.95802 1.69707 1.30916 1.18156 1.28556 0.85491 0.75634 0.81718 0.78207 1.17209 1.20853 1.16830 1.21185 1.03914 0.96280 0.95946 1.21383 0.91844 1.00843 1.04033 1.21123 1.01864 0.87569 0.91482 1.15500 0.88123 0.88648 1.15687 1.25344 0.92486 0.92389 0.92461 1.81232 1.10299 1.10935 1.10837 0.90333 0.91520 0.85715 0.81932 0.83231 0.83298 0.87300 0.89394 0.88063 0.82966 0.80385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.98 9.93 -90.28 -0.90 -6.88 16 3 C 0.19 3.75 6.69 22.82 0.15 3.90 16 4 C -0.21 -4.22 8.96 22.43 0.20 -4.02 16 5 C 0.14 3.22 5.08 22.59 0.11 3.34 16 6 O -0.28 -7.70 9.25 1.21 0.01 -7.68 16 7 C 0.52 17.85 7.78 70.34 0.55 18.40 16 8 O -0.52 -20.08 15.93 19.94 0.32 -19.76 16 9 C -0.10 -3.75 5.87 -20.15 -0.12 -3.87 16 10 C -0.16 -5.22 9.62 22.71 0.22 -5.00 16 11 C -0.08 -2.82 10.01 22.18 0.22 -2.60 16 12 C -0.22 -8.91 7.08 22.77 0.16 -8.75 16 13 C 0.06 3.01 5.17 -21.32 -0.11 2.90 16 14 C -0.48 -25.87 9.59 23.47 0.23 -25.65 16 15 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 16 C 0.04 2.17 5.44 85.25 0.46 2.63 16 17 N -0.85 -44.76 13.93 21.82 0.30 -44.45 16 18 Si 0.97 39.00 24.41 68.60 1.67 40.68 16 19 H -0.25 -9.05 6.65 99.48 0.66 -8.39 16 20 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.24 -9.84 6.74 99.48 0.67 -9.17 16 22 C -0.15 -6.88 9.34 23.02 0.21 -6.66 16 23 C -0.16 -3.19 9.65 22.33 0.22 -2.97 16 24 C 0.00 0.00 9.75 22.51 0.22 0.21 16 25 C -0.08 -1.45 5.76 -21.15 -0.12 -1.57 16 26 C 0.29 6.49 14.87 88.34 1.31 7.80 16 27 N -0.46 -12.22 18.54 19.01 0.35 -11.87 16 28 H 0.08 0.63 7.65 -2.39 -0.02 0.61 16 29 H 0.07 0.70 7.67 -2.39 -0.02 0.69 16 30 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.16 2.65 6.29 -2.91 -0.02 2.63 16 32 H 0.15 3.74 7.59 -2.91 -0.02 3.72 16 33 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.11 4.42 4.31 -2.91 -0.01 4.41 16 35 H 0.30 13.93 8.30 -92.71 -0.77 13.16 16 36 H 0.10 4.76 7.64 -2.91 -0.02 4.74 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -64.19 342.77 7.84 -56.34 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.05 Total: 14.30 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 5.03 Total: -20.68 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.66 Total: -56.32 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.57 Total: -34.32 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.67 Total: 40.68 kcal Total: -64.19 7.84 -56.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195167412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.683 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds