Wall clock time and date at job start Sat Apr 11 2020 00:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00687 * 2 1 4 4 O 1.20830 * 119.99753 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00547 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46634 * 40.00082 * 5 3 2 7 7 C 1.52997 * 109.47441 * 280.00292 * 5 3 2 8 8 S 1.81401 * 109.47319 * 159.99950 * 5 3 2 9 9 C 1.76195 * 102.99892 * 191.89573 * 8 5 3 10 10 C 1.39027 * 120.18992 * 6.31867 * 9 8 5 11 11 C 1.37926 * 120.06658 * 180.02562 * 10 9 8 12 12 C 1.38670 * 120.44458 * 0.02562 * 11 10 9 13 13 C 1.37720 * 120.37739 * 359.97438 * 12 11 10 14 14 C 1.39807 * 119.92511 * 0.27781 * 13 12 11 15 15 C 1.47277 * 120.22032 * 179.70557 * 14 13 12 16 16 O 1.21644 * 120.00530 * 125.67365 * 15 14 13 17 17 N 1.34778 * 119.99551 * 305.66884 * 15 14 13 18 18 C 1.46506 * 120.00246 * 4.72656 * 17 15 14 19 19 C 1.36911 * 120.00086 * 184.72414 * 17 15 14 20 20 H 1.08003 * 119.99563 * 4.11884 * 19 17 15 21 21 C 1.39007 * 120.00315 * 184.11298 * 19 17 15 22 22 N 1.31391 * 120.00053 * 8.33211 * 21 19 17 23 23 Si 1.86799 * 119.99980 * 188.33243 * 21 19 17 24 24 H 1.48492 * 109.47253 * 60.00053 * 23 21 19 25 25 H 1.48503 * 109.47087 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47239 * 299.99750 * 23 21 19 27 27 H 1.09001 * 109.47690 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47099 * 300.00601 * 1 2 3 29 29 H 1.09002 * 109.47210 * 59.99506 * 1 2 3 30 30 H 1.09005 * 109.47028 * 305.99718 * 7 5 3 31 31 H 1.09003 * 109.47359 * 65.99299 * 7 5 3 32 32 H 1.08998 * 109.47420 * 185.99272 * 7 5 3 33 33 H 1.07995 * 119.96756 * 359.97438 * 10 9 8 34 34 H 1.08000 * 119.77811 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.81099 * 180.02562 * 12 11 10 36 36 H 1.07996 * 120.03712 * 180.02562 * 13 12 11 37 37 H 1.09000 * 109.47017 * 354.44235 * 18 17 15 38 38 H 1.09000 * 109.46816 * 114.44220 * 18 17 15 39 39 H 1.08997 * 109.47151 * 234.43957 * 18 17 15 40 40 H 0.96998 * 120.00025 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9706 0.5074 -0.6597 7 6 4.0883 1.0515 1.4213 8 16 4.0865 2.9111 -0.5845 9 6 5.8157 2.7051 -0.8526 10 6 6.3972 1.4482 -0.7302 11 6 7.7512 1.2899 -0.9401 12 6 8.5426 2.3787 -1.2734 13 6 7.9856 3.6320 -1.3994 14 6 6.6158 3.8112 -1.1849 15 6 6.0145 5.1496 -1.3116 16 8 5.0667 5.3229 -2.0541 17 7 6.5144 6.1825 -0.6047 18 6 7.7184 5.9985 0.2095 19 6 5.8972 7.4038 -0.6474 20 1 4.9731 7.5229 -1.1937 21 6 6.4596 8.4904 0.0123 22 7 7.6599 8.3908 0.5374 23 14 5.5090 10.0923 0.1523 24 1 4.2366 9.8510 0.8788 25 1 6.3224 11.0872 0.8966 26 1 5.2122 10.6122 -1.2067 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.6024 1.7515 2.1011 31 1 3.8682 0.0304 1.7331 32 1 5.1660 1.2134 1.4422 33 1 5.7883 0.5951 -0.4698 34 1 8.1980 0.3114 -0.8443 35 1 9.6016 2.2430 -1.4359 36 1 8.6071 4.4760 -1.6596 37 1 8.0078 4.9476 0.1979 38 1 8.5286 6.6030 -0.1983 39 1 7.5147 6.3079 1.2346 40 1 8.0522 9.1489 0.9980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263830776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:56 Heat of formation + Delta-G solvation = -62.401303 kcal Electronic energy + Delta-G solvation = -24955.850724 eV Core-core repulsion = 21249.544232 eV Total energy + Delta-G solvation = -3706.306492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60106 -39.40041 -37.48649 -36.67741 -34.71957 -33.78797 -31.84583 -30.69744 -30.50305 -28.03249 -26.35643 -24.92097 -24.81762 -22.89061 -22.45120 -21.22808 -19.59525 -17.96511 -17.49448 -17.01824 -16.63439 -16.48205 -16.22629 -15.42436 -15.08938 -14.73753 -14.33452 -14.20460 -13.95280 -13.79984 -13.46257 -13.36408 -12.81401 -12.73667 -12.60395 -12.34049 -12.27479 -12.04451 -11.82475 -11.56318 -11.29917 -11.00635 -10.98685 -10.87252 -10.75817 -10.55898 -10.41232 -10.22154 -9.76412 -9.49232 -9.05680 -8.63355 -8.30464 -7.87284 -7.07218 -6.29460 -3.81192 1.30961 1.38224 1.50269 2.04550 2.56074 2.65586 3.18515 3.23788 3.29009 3.67560 4.05550 4.17053 4.49792 4.56473 4.73653 4.81571 4.89443 4.98154 5.01227 5.13857 5.22575 5.28699 5.37778 5.42010 5.48124 5.62831 5.70676 5.88040 5.95376 6.13440 6.16107 6.38032 6.45375 6.60358 6.70481 7.06654 7.08810 7.37154 7.53348 7.54049 8.02998 8.45514 9.15070 9.39488 9.94887 10.64424 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.004244 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.983848 B = 6595.204784 C = 8228.616928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.484 3.516 4 O -0.480 6.480 5 C -0.121 4.121 6 H 0.123 0.877 7 C -0.143 4.143 8 S 0.027 5.973 9 C -0.077 4.077 10 C -0.144 4.144 11 C -0.102 4.102 12 C -0.131 4.131 13 C -0.077 4.077 14 C -0.064 4.064 15 C 0.461 3.539 16 O -0.578 6.578 17 N -0.427 5.427 18 C 0.104 3.896 19 C -0.296 4.296 20 H 0.107 0.893 21 C 0.028 3.972 22 N -0.881 5.881 23 Si 0.933 3.067 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -18.106 2.553 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.324 3.676 4 O -0.365 6.365 5 C -0.250 4.250 6 H 0.141 0.859 7 C -0.202 4.202 8 S 0.273 5.727 9 C -0.191 4.191 10 C -0.168 4.168 11 C -0.122 4.122 12 C -0.152 4.152 13 C -0.097 4.097 14 C -0.074 4.074 15 C 0.249 3.751 16 O -0.464 6.464 17 N -0.143 5.143 18 C -0.040 4.040 19 C -0.424 4.424 20 H 0.125 0.875 21 C -0.175 4.175 22 N -0.522 5.522 23 Si 0.759 3.241 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.606 -16.577 2.208 17.108 hybrid contribution 0.504 -0.302 0.337 0.677 sum -3.102 -16.880 2.546 17.350 Atomic orbital electron populations 1.23313 0.75917 1.03718 1.02924 1.86470 1.23630 1.32849 1.84351 1.22602 0.90200 0.81791 0.72981 1.90753 1.66342 1.35942 1.43446 1.23423 0.91980 1.05475 1.04156 0.85938 1.22067 1.02962 1.03161 0.92019 1.87340 0.99237 1.06671 1.79461 1.22058 0.97973 0.95662 1.03441 1.21007 0.96043 0.94980 1.04818 1.20978 0.93188 0.98638 0.99395 1.21035 0.99839 0.92541 1.01779 1.21350 0.93353 0.97662 0.97372 1.19893 0.93186 0.94054 1.00239 1.17601 0.87521 0.83702 0.86300 1.90663 1.30735 1.83675 1.41346 1.43628 1.23771 1.08641 1.38233 1.22029 0.88299 0.96804 0.96826 1.19824 1.07033 0.84609 1.30902 0.87527 1.25351 0.95879 0.99841 0.96400 1.70131 1.13770 1.31839 1.36437 0.85880 0.79224 0.80211 0.78767 1.19709 1.20837 1.19685 0.87950 0.91710 0.91608 0.90601 0.90902 0.89919 0.85972 0.86024 0.85794 0.84979 0.94815 0.90490 0.91868 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.11 10.56 -39.24 -0.41 -4.53 16 3 C 0.48 6.93 7.13 36.00 0.26 7.19 16 4 O -0.48 -8.54 15.79 -18.75 -0.30 -8.83 16 5 C -0.12 -1.62 2.49 -27.89 -0.07 -1.69 16 6 H 0.12 1.36 6.71 -51.92 -0.35 1.01 16 7 C -0.14 -1.58 8.73 37.16 0.32 -1.26 16 8 S 0.03 0.52 18.80 -107.50 -2.02 -1.50 16 9 C -0.08 -1.41 6.03 -38.44 -0.23 -1.64 16 10 C -0.14 -2.03 8.14 -39.40 -0.32 -2.35 16 11 C -0.10 -1.28 10.03 -39.54 -0.40 -1.67 16 12 C -0.13 -1.79 10.02 -39.61 -0.40 -2.18 16 13 C -0.08 -1.33 7.37 -39.18 -0.29 -1.62 16 14 C -0.06 -1.33 4.90 -104.78 -0.51 -1.85 16 15 C 0.46 11.85 6.49 -12.59 -0.08 11.77 16 16 O -0.58 -16.78 15.63 5.24 0.08 -16.70 16 17 N -0.43 -11.28 3.02 -123.47 -0.37 -11.65 16 18 C 0.10 2.40 7.97 59.85 0.48 2.87 16 19 C -0.30 -8.39 9.55 -15.00 -0.14 -8.53 16 20 H 0.11 3.18 7.19 -52.48 -0.38 2.80 16 21 C 0.03 0.74 5.39 -17.46 -0.09 0.64 16 22 N -0.88 -23.05 9.58 55.50 0.53 -22.51 16 23 Si 0.93 21.00 29.56 -169.99 -5.03 15.97 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.90 6.39 -51.93 -0.33 0.57 16 33 H 0.12 1.36 5.07 -52.49 -0.27 1.09 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.13 2.25 7.33 -52.49 -0.38 1.87 16 37 H 0.03 0.67 4.53 -51.93 -0.24 0.44 16 38 H 0.08 1.84 6.92 -51.93 -0.36 1.48 16 39 H 0.06 1.54 7.22 -51.93 -0.37 1.17 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -33.82 345.54 -7.49 -41.32 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.77 Total: 2.17 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.41 Total: 1.06 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.16 Total: -34.17 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.63 Total: -30.06 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.02 Total: -1.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.82 -7.49 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263830776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.084 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds