Wall clock time and date at job start Sat Apr 11 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99622 * 2 1 4 4 O 1.20820 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99462 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.46977 * 60.00791 * 5 3 2 7 7 C 1.52997 * 109.47721 * 300.00641 * 5 3 2 8 8 C 1.50701 * 109.47212 * 174.99887 * 7 5 3 9 9 C 1.38233 * 120.00099 * 269.72808 * 8 7 5 10 10 C 1.38239 * 119.99655 * 179.76882 * 9 8 7 11 11 C 1.38230 * 120.00228 * 0.50243 * 10 9 8 12 12 C 1.38238 * 119.99995 * 359.75228 * 11 10 9 13 13 C 1.38238 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.46504 * 109.46820 * 180.02562 * 5 3 2 15 15 C 1.34776 * 120.00219 * 275.00554 * 14 5 3 16 16 O 1.21274 * 120.00173 * 359.97438 * 15 14 5 17 17 C 1.50705 * 119.99786 * 180.02562 * 15 14 5 18 18 S 1.80998 * 109.46806 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99961 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99633 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99960 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47230 * 59.99451 * 23 21 19 25 25 H 1.48503 * 109.46955 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46918 * 299.99597 * 23 21 19 27 27 H 1.09006 * 109.47049 * 299.99593 * 1 2 3 28 28 H 1.08997 * 109.47490 * 59.99353 * 1 2 3 29 29 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 54.99889 * 7 5 3 31 31 H 1.09001 * 109.46832 * 295.00079 * 7 5 3 32 32 H 1.08003 * 119.99927 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.99431 * 180.23215 * 10 9 8 34 34 H 1.07997 * 120.00220 * 179.73036 * 11 10 9 35 35 H 1.08002 * 119.99952 * 179.97438 * 12 11 10 36 36 H 1.07991 * 120.00062 * 179.97438 * 13 12 11 37 37 H 0.97006 * 119.99491 * 95.00623 * 14 5 3 38 38 H 1.08995 * 109.47237 * 299.99994 * 17 15 14 39 39 H 1.08997 * 109.46884 * 59.99911 * 17 15 14 40 40 H 0.97000 * 120.00094 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7807 -0.8893 7 6 4.1129 0.5815 1.2500 8 6 5.6185 0.5521 1.1901 9 6 6.2660 -0.5180 0.6016 10 6 7.6469 -0.5426 0.5425 11 6 8.3805 0.4978 1.0810 12 6 7.7330 1.5655 1.6743 13 6 6.3520 1.5929 1.7285 14 7 3.9816 2.6798 0.0011 15 6 4.0754 3.3553 -1.1614 16 8 3.8165 2.7999 -2.2080 17 6 4.5033 4.8003 -1.1609 18 16 4.5313 5.4218 -2.8606 19 6 5.0498 7.0808 -2.5712 20 1 5.2421 7.4184 -1.5635 21 6 5.2100 7.9539 -3.6382 22 7 4.9752 7.5425 -4.8662 23 14 5.7590 9.7129 -3.3313 24 1 7.0880 9.7082 -2.6687 25 1 5.8542 10.4347 -4.6257 26 1 4.7717 10.3938 -2.4557 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.7312 -0.4385 1.2959 31 1 3.7952 1.1287 2.1376 32 1 5.6930 -1.3333 0.1851 33 1 8.1527 -1.3769 0.0793 34 1 9.4594 0.4765 1.0387 35 1 8.3062 2.3782 2.0955 36 1 5.8462 2.4267 2.1923 37 1 4.1891 3.1239 0.8382 38 1 3.7992 5.3874 -0.5713 39 1 5.4994 4.8841 -0.7264 40 1 5.0875 8.1526 -5.6120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264040017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:05 Heat of formation + Delta-G solvation = -98.865859 kcal Electronic energy + Delta-G solvation = -24407.109750 eV Core-core repulsion = 20699.222036 eV Total energy + Delta-G solvation = -3707.887714 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88107 -39.51882 -38.88745 -36.56731 -35.46630 -32.61018 -32.40422 -31.04957 -30.29068 -28.56714 -27.50107 -25.47829 -24.71635 -22.78719 -21.59247 -21.08553 -20.34347 -18.00385 -17.72486 -17.24996 -16.89483 -16.53917 -16.16475 -15.82687 -15.26500 -15.13824 -14.78310 -14.68326 -13.98044 -13.86011 -13.69233 -13.57619 -13.19765 -13.09286 -12.94449 -12.65702 -12.38177 -12.19173 -12.02012 -11.77495 -11.34797 -11.16747 -11.02541 -11.02034 -10.90486 -10.75441 -10.61636 -9.81167 -9.50011 -9.19131 -9.04657 -9.02519 -8.87916 -8.21841 -6.47161 -6.19163 -3.89502 1.14366 1.25746 2.13539 2.36928 2.99545 3.18599 3.25340 3.28936 3.32149 3.60523 3.67272 4.22544 4.36354 4.53236 4.58323 4.81729 4.86835 4.91627 4.96292 4.98016 5.04883 5.09322 5.15967 5.29465 5.33363 5.38074 5.44515 5.52455 5.70012 5.83449 5.87731 5.91394 6.15435 6.22260 6.29571 6.34376 6.38444 6.43334 6.83677 7.56462 7.61784 7.66643 8.37367 8.53081 9.25935 10.88297 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.003652 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.546430 B = 7664.695802 C = 9610.883105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.446 3.554 4 O -0.488 6.488 5 C 0.167 3.833 6 H 0.129 0.871 7 C -0.081 4.081 8 C -0.084 4.084 9 C -0.112 4.112 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.116 4.116 13 C -0.109 4.109 14 N -0.715 5.715 15 C 0.542 3.458 16 O -0.513 6.513 17 C -0.151 4.151 18 S -0.058 6.058 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.403 0.597 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -18.588 16.890 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.285 3.715 4 O -0.373 6.373 5 C 0.058 3.942 6 H 0.146 0.854 7 C -0.119 4.119 8 C -0.084 4.084 9 C -0.130 4.130 10 C -0.136 4.136 11 C -0.138 4.138 12 C -0.134 4.134 13 C -0.127 4.127 14 N -0.371 5.371 15 C 0.329 3.671 16 O -0.386 6.386 17 C -0.301 4.301 18 S 0.169 5.831 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.238 0.762 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.419 -19.151 14.923 24.282 hybrid contribution 0.453 2.131 1.711 2.770 sum 0.034 -17.020 16.634 23.798 Atomic orbital electron populations 1.23257 0.76402 1.03523 1.02682 1.86480 1.23408 1.33447 1.84359 1.24466 0.92574 0.81669 0.72784 1.90705 1.66613 1.36324 1.43638 1.20343 0.86146 0.85318 1.02344 0.85389 1.20817 0.92316 1.02588 0.96129 1.19597 0.94220 0.95221 0.99404 1.21060 0.94667 0.98141 0.99109 1.21144 0.94070 0.98826 0.99579 1.21187 0.99990 0.94322 0.98288 1.21163 0.94529 0.98319 0.99392 1.21027 0.94158 0.97738 0.99737 1.45780 1.70610 1.10441 1.10233 1.20359 0.75613 0.88326 0.82816 1.90700 1.47497 1.69288 1.31116 1.23499 1.04052 0.93849 1.08718 1.85399 1.89060 1.10903 0.97760 1.22828 1.53036 0.96554 0.95971 0.90958 1.24978 0.94943 0.99165 0.94412 1.70004 1.45792 1.36092 0.98441 0.86232 0.79174 0.82462 0.77681 1.19932 1.20813 1.19932 0.92017 0.91761 0.88124 0.87939 0.89704 0.85808 0.86033 0.86145 0.85934 0.86167 0.76165 0.88988 0.89046 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.15 10.37 -39.27 -0.41 -4.55 16 3 C 0.45 6.19 7.29 36.00 0.26 6.45 16 4 O -0.49 -8.53 16.07 -18.75 -0.30 -8.83 16 5 C 0.17 2.03 2.47 -69.08 -0.17 1.86 16 6 H 0.13 1.71 7.58 -51.92 -0.39 1.32 16 7 C -0.08 -0.67 4.85 -27.88 -0.14 -0.80 16 8 C -0.08 -0.78 4.95 -104.62 -0.52 -1.30 16 9 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 10 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 12 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 13 C -0.11 -1.02 9.10 -39.58 -0.36 -1.38 16 14 N -0.72 -10.01 4.06 -54.93 -0.22 -10.24 16 15 C 0.54 10.50 7.68 -10.98 -0.08 10.42 16 16 O -0.51 -11.94 15.53 5.56 0.09 -11.86 16 17 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 22 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 23 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 31 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.92 7.57 -52.49 -0.40 0.52 16 37 H 0.40 4.46 7.82 -40.82 -0.32 4.14 16 38 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -37.48 366.61 -8.21 -45.69 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.29 Total: 2.53 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.10 Total: -5.30 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.51 Total: -35.99 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.62 Total: -25.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.48 -8.21 -45.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264040017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.172 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds