Wall clock time and date at job start Sat Apr 11 2020 00:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99622 * 2 1 4 4 O 1.20820 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99462 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.46977 * 60.00791 * 5 3 2 7 7 C 1.52997 * 109.47721 * 300.00641 * 5 3 2 8 8 C 1.50701 * 109.47212 * 174.99887 * 7 5 3 9 9 C 1.38233 * 120.00099 * 269.72808 * 8 7 5 10 10 C 1.38239 * 119.99655 * 179.76882 * 9 8 7 11 11 C 1.38230 * 120.00228 * 0.50243 * 10 9 8 12 12 C 1.38238 * 119.99995 * 359.75228 * 11 10 9 13 13 C 1.38238 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.46504 * 109.46820 * 180.02562 * 5 3 2 15 15 C 1.34776 * 120.00219 * 275.00554 * 14 5 3 16 16 O 1.21274 * 120.00173 * 359.97438 * 15 14 5 17 17 C 1.50705 * 119.99786 * 180.02562 * 15 14 5 18 18 S 1.80998 * 109.46806 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99961 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99633 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99960 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47230 * 59.99451 * 23 21 19 25 25 H 1.48503 * 109.46955 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46918 * 299.99597 * 23 21 19 27 27 H 1.09006 * 109.47049 * 299.99593 * 1 2 3 28 28 H 1.08997 * 109.47490 * 59.99353 * 1 2 3 29 29 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 54.99889 * 7 5 3 31 31 H 1.09001 * 109.46832 * 295.00079 * 7 5 3 32 32 H 1.08003 * 119.99927 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.99431 * 180.23215 * 10 9 8 34 34 H 1.07997 * 120.00220 * 179.73036 * 11 10 9 35 35 H 1.08002 * 119.99952 * 179.97438 * 12 11 10 36 36 H 1.07991 * 120.00062 * 179.97438 * 13 12 11 37 37 H 0.97006 * 119.99491 * 95.00623 * 14 5 3 38 38 H 1.08995 * 109.47237 * 299.99994 * 17 15 14 39 39 H 1.08997 * 109.46884 * 59.99911 * 17 15 14 40 40 H 0.97000 * 120.00094 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7807 -0.8893 7 6 4.1129 0.5815 1.2500 8 6 5.6185 0.5521 1.1901 9 6 6.2660 -0.5180 0.6016 10 6 7.6469 -0.5426 0.5425 11 6 8.3805 0.4978 1.0810 12 6 7.7330 1.5655 1.6743 13 6 6.3520 1.5929 1.7285 14 7 3.9816 2.6798 0.0011 15 6 4.0754 3.3553 -1.1614 16 8 3.8165 2.7999 -2.2080 17 6 4.5033 4.8003 -1.1609 18 16 4.5313 5.4218 -2.8606 19 6 5.0498 7.0808 -2.5712 20 1 5.2421 7.4184 -1.5635 21 6 5.2100 7.9539 -3.6382 22 7 4.9752 7.5425 -4.8662 23 14 5.7590 9.7129 -3.3313 24 1 7.0880 9.7082 -2.6687 25 1 5.8542 10.4347 -4.6257 26 1 4.7717 10.3938 -2.4557 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.7312 -0.4385 1.2959 31 1 3.7952 1.1287 2.1376 32 1 5.6930 -1.3333 0.1851 33 1 8.1527 -1.3769 0.0793 34 1 9.4594 0.4765 1.0387 35 1 8.3062 2.3782 2.0955 36 1 5.8462 2.4267 2.1923 37 1 4.1891 3.1239 0.8382 38 1 3.7992 5.3874 -0.5713 39 1 5.4994 4.8841 -0.7264 40 1 5.0875 8.1526 -5.6120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264040017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:04 Heat of formation + Delta-G solvation = -123.058363 kcal Electronic energy + Delta-G solvation = -24408.158816 eV Core-core repulsion = 20699.222036 eV Total energy + Delta-G solvation = -3708.936779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98047 -40.54387 -39.97156 -37.66004 -36.57919 -34.59127 -33.68958 -31.71025 -31.46916 -29.83079 -28.32190 -27.65499 -25.60650 -23.48181 -22.62968 -21.97014 -21.61382 -19.88910 -18.88851 -18.29775 -18.06679 -17.58205 -17.24511 -16.99700 -16.87964 -16.21714 -16.07994 -15.94149 -15.63609 -14.86533 -14.77739 -14.58278 -14.44670 -14.20537 -13.85211 -13.79850 -13.60609 -13.18488 -13.17881 -12.97972 -12.86965 -12.65698 -12.61886 -12.12610 -11.84920 -11.80282 -11.76246 -11.68415 -11.13205 -11.09752 -10.43635 -10.30140 -9.73847 -9.59473 -8.67737 -8.34780 -6.13264 0.43931 0.57786 1.04963 1.17014 1.32414 1.43850 1.45978 1.55114 1.80418 2.21197 2.27102 2.89923 2.99412 3.29022 3.53801 3.71959 3.84089 3.92476 4.04991 4.15719 4.22740 4.27578 4.29616 4.30689 4.36231 4.46648 4.52237 4.67889 4.69507 4.80149 4.84911 5.13789 5.18526 5.23431 5.27391 5.41161 5.62809 5.70391 5.71278 6.18214 6.19287 6.31464 6.60629 7.06182 7.09741 8.74401 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.003652 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.546430 B = 7664.695802 C = 9610.883105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.448 3.552 4 O -0.530 6.530 5 C 0.167 3.833 6 H 0.118 0.882 7 C -0.067 4.067 8 C -0.094 4.094 9 C -0.122 4.122 10 C -0.132 4.132 11 C -0.133 4.133 12 C -0.132 4.132 13 C -0.120 4.120 14 N -0.693 5.693 15 C 0.544 3.456 16 O -0.559 6.559 17 C -0.128 4.128 18 S -0.149 6.149 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.420 0.580 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -18.832 19.314 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.290 3.710 4 O -0.419 6.419 5 C 0.059 3.941 6 H 0.135 0.865 7 C -0.104 4.104 8 C -0.094 4.094 9 C -0.140 4.140 10 C -0.150 4.150 11 C -0.151 4.151 12 C -0.150 4.150 13 C -0.138 4.138 14 N -0.348 5.348 15 C 0.331 3.669 16 O -0.437 6.437 17 C -0.279 4.279 18 S 0.079 5.921 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.184 1.184 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.258 0.742 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.038 -19.439 17.414 26.099 hybrid contribution 0.296 2.040 1.030 2.304 sum 0.259 -17.399 18.444 25.357 Atomic orbital electron populations 1.23566 0.74842 1.05925 1.02210 1.86474 1.24872 1.31954 1.83596 1.24689 0.93043 0.81695 0.71577 1.90694 1.67584 1.37710 1.45866 1.20558 0.85480 0.83942 1.04107 0.86464 1.20820 0.91574 1.03536 0.94509 1.19732 0.94639 0.95386 0.99686 1.21365 0.94996 0.98729 0.98923 1.21436 0.94429 0.99393 0.99694 1.21475 1.00919 0.94449 0.98235 1.21431 0.95012 0.98851 0.99719 1.21312 0.94358 0.98304 0.99801 1.45483 1.68819 1.11213 1.09244 1.20097 0.75404 0.87845 0.83599 1.90685 1.49887 1.70005 1.33083 1.23331 1.05948 0.94945 1.03648 1.85572 1.89480 1.12297 1.04792 1.23175 1.53064 0.96615 0.96696 0.89861 1.26124 0.94643 1.04320 0.93921 1.70175 1.47027 1.37982 0.99626 0.85008 0.79254 0.75890 0.77872 1.18449 1.20340 1.18760 0.91453 0.93351 0.84290 0.85731 0.87730 0.84297 0.84584 0.84919 0.84872 0.84608 0.74181 0.87611 0.86660 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.35 -7.51 10.37 -51.45 -0.53 -8.04 16 3 C 0.45 11.97 7.29 71.24 0.52 12.49 16 4 O -0.53 -18.36 16.07 21.98 0.35 -18.00 16 5 C 0.17 3.83 2.47 44.24 0.11 3.94 16 6 H 0.12 3.06 7.58 -2.38 -0.02 3.04 16 7 C -0.07 -0.92 4.85 29.85 0.14 -0.78 16 8 C -0.09 -1.55 4.95 -19.86 -0.10 -1.65 16 9 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 10 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 11 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 12 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 13 C -0.12 -2.00 9.10 22.27 0.20 -1.80 16 14 N -0.69 -18.45 4.06 -446.09 -1.81 -20.26 16 15 C 0.54 20.99 7.68 87.66 0.67 21.66 16 16 O -0.56 -26.70 15.53 -3.01 -0.05 -26.75 16 17 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 18 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 19 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 21 C 0.01 0.85 5.49 84.86 0.47 1.31 16 22 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 23 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H 0.07 1.05 8.13 -2.38 -0.02 1.03 16 28 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.24 7.94 -2.39 -0.02 1.22 16 31 H 0.10 1.08 8.09 -2.39 -0.02 1.06 16 32 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.14 1.71 7.57 -2.92 -0.02 1.69 16 37 H 0.42 8.30 7.82 -92.70 -0.73 7.58 16 38 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 39 H 0.12 4.18 8.14 -2.40 -0.02 4.16 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -84.02 366.61 4.63 -79.39 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.33 Total: 20.84 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.18 Total: -7.14 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.52 Total: -76.73 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.23 Total: -52.80 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -84.02 4.63 -79.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264040017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.668 kcal (2) G-P(sol) polarization free energy of solvation -84.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds