Wall clock time and date at job start Sat Apr 11 2020 00:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34828 * 117.00428 * 2 1 4 4 O 1.21542 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.47006 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.36692 * 125.16182 * 179.97438 * 5 3 2 7 7 C 1.36769 * 114.73459 * 179.79949 * 6 5 3 8 8 C 1.36629 * 114.75068 * 0.43031 * 7 6 5 9 9 C 1.47208 * 125.15465 * 179.85214 * 8 7 6 10 10 O 1.21616 * 120.00087 * 6.87760 * 9 8 7 11 11 N 1.34771 * 119.99800 * 186.86961 * 9 8 7 12 12 C 1.46504 * 120.00123 * 185.74058 * 11 9 8 13 13 C 1.50702 * 109.47230 * 270.00631 * 12 11 9 14 14 H 1.08007 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00261 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99796 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00308 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47013 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46905 * 119.99870 * 17 15 13 20 20 H 1.48493 * 109.47064 * 240.00044 * 17 15 13 21 21 C 1.46502 * 120.00030 * 5.74793 * 11 9 8 22 22 C 1.52999 * 109.46970 * 274.09347 * 21 11 9 23 23 C 1.53003 * 117.49736 * 243.74756 * 22 21 11 24 24 C 1.53002 * 117.49606 * 175.08813 * 22 21 11 25 25 S 1.75829 * 109.68561 * 359.59142 * 8 7 6 26 26 H 1.09005 * 109.46636 * 300.00392 * 1 2 3 27 27 H 1.09007 * 109.46676 * 59.99385 * 1 2 3 28 28 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.07998 * 122.63351 * 0.03266 * 6 5 3 30 30 H 1.08000 * 122.62493 * 180.24508 * 7 6 5 31 31 H 1.08998 * 109.47015 * 30.00420 * 12 11 9 32 32 H 1.08999 * 109.47260 * 150.00804 * 12 11 9 33 33 H 0.96995 * 120.00289 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.47044 * 154.09583 * 21 11 9 35 35 H 1.08999 * 109.47336 * 34.09145 * 21 11 9 36 36 H 1.09000 * 115.55253 * 29.41806 * 22 21 11 37 37 H 1.08996 * 117.49855 * 0.02562 * 23 22 21 38 38 H 1.08997 * 117.49685 * 145.02239 * 23 22 21 39 39 H 1.09000 * 117.49582 * 214.97433 * 24 22 21 40 40 H 1.08994 * 117.50220 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2013 0.0000 4 8 1.4023 2.2206 -0.0005 5 6 3.5323 1.2781 -0.0006 6 6 4.2600 2.4351 -0.0011 7 6 5.6162 2.2582 0.0028 8 6 6.0229 0.9539 -0.0028 9 6 7.4242 0.5029 -0.0033 10 8 8.3233 1.3115 0.1275 11 7 7.7109 -0.8059 -0.1486 12 6 9.0945 -1.2711 -0.0236 13 6 9.7611 -1.2336 -1.3746 14 1 9.2091 -0.8974 -2.2400 15 6 11.0755 -1.6286 -1.5061 16 7 11.7474 -2.0385 -0.4525 17 14 11.9015 -1.5829 -3.1809 18 1 10.9368 -1.0873 -4.1952 19 1 13.0751 -0.6745 -3.1293 20 1 12.3494 -2.9499 -3.5494 21 6 6.6389 -1.7635 -0.4316 22 6 6.0023 -2.2196 0.8827 23 6 6.1301 -3.6984 1.2538 24 6 4.7815 -3.1377 0.7951 25 16 4.6188 -0.1044 -0.0016 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.8002 3.4123 -0.0007 30 1 6.3113 3.0848 0.0067 31 1 9.6348 -0.6228 0.6662 32 1 9.1014 -2.2925 0.3568 33 1 12.6722 -2.3160 -0.5448 34 1 7.0514 -2.6265 -0.9542 35 1 5.8824 -1.2881 -1.0560 36 1 6.0282 -1.4929 1.6947 37 1 6.6680 -4.3463 0.5618 38 1 6.2397 -3.9446 2.3100 39 1 4.0046 -3.0153 1.5498 40 1 4.4322 -3.4172 -0.1988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264114227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:08 Heat of formation + Delta-G solvation = -48.580107 kcal Electronic energy + Delta-G solvation = -24922.440791 eV Core-core repulsion = 21216.733631 eV Total energy + Delta-G solvation = -3705.707160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47856 -39.45769 -37.85004 -37.01290 -36.31003 -34.57744 -32.68331 -30.55421 -28.49779 -27.70368 -26.55682 -25.23816 -23.09749 -22.33323 -21.96953 -21.09458 -20.00424 -19.07977 -18.06429 -17.22542 -16.73132 -16.57842 -16.50276 -15.82448 -15.23659 -15.07385 -14.80093 -14.48886 -14.05826 -13.84387 -13.61262 -13.34197 -12.96150 -12.71054 -12.68672 -12.45956 -12.15460 -12.04929 -11.60225 -11.46040 -11.35028 -11.07313 -11.06312 -10.93517 -10.74876 -10.45759 -10.30384 -10.20234 -10.01533 -9.69976 -9.32388 -8.88182 -8.49832 -8.41510 -7.86811 -6.10463 -4.15405 0.05918 1.41640 1.80850 1.96612 2.43437 2.79205 3.26941 3.34976 3.38078 3.55879 3.61644 3.89857 4.40099 4.60205 4.67351 4.82872 4.90129 4.90433 4.95194 5.11696 5.17827 5.23343 5.24768 5.33160 5.41001 5.54635 5.68400 5.82473 5.85833 5.97900 5.99111 6.13361 6.18623 6.25177 6.28073 6.92245 7.28849 7.37560 7.48171 7.85103 8.12713 8.16173 8.71841 8.90830 9.49884 10.97710 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.003696 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.453677 B = 7574.583910 C = 8424.727156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.542 3.458 4 O -0.504 6.504 5 C -0.293 4.293 6 C -0.053 4.053 7 C -0.095 4.095 8 C -0.213 4.213 9 C 0.570 3.430 10 O -0.515 6.515 11 N -0.583 5.583 12 C 0.249 3.751 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.126 3.874 22 C -0.185 4.185 23 C -0.164 4.164 24 C -0.174 4.174 25 S 0.287 5.713 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -1.091 2.420 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.386 3.614 4 O -0.393 6.393 5 C -0.411 4.411 6 C -0.087 4.087 7 C -0.127 4.127 8 C -0.336 4.336 9 C 0.354 3.646 10 O -0.392 6.392 11 N -0.314 5.314 12 C 0.131 3.869 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.000 4.000 22 C -0.206 4.206 23 C -0.201 4.201 24 C -0.212 4.212 25 S 0.560 5.440 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.427 -2.044 2.540 20.686 hybrid contribution 0.450 1.642 -0.876 1.915 sum -19.977 -0.402 1.665 20.051 Atomic orbital electron populations 1.23296 0.75690 1.03887 1.02682 1.86579 1.23744 1.32244 1.84579 1.19877 0.87280 0.81590 0.72628 1.90847 1.66212 1.35977 1.46285 1.24490 0.94670 1.02331 1.19564 1.20461 0.92468 0.98419 0.97348 1.20467 0.95050 0.96440 1.00757 1.25701 0.98688 0.98398 1.10801 1.17088 0.85452 0.83257 0.78770 1.90813 1.46155 1.52573 1.49689 1.48158 1.10495 1.04882 1.67828 1.19397 0.74011 0.95528 0.97978 1.21446 0.97027 1.44174 0.94098 0.92257 1.24919 0.96977 0.95006 0.97059 1.69933 1.10406 1.43953 1.28898 0.86436 0.79524 0.77587 0.83860 1.19752 1.20827 1.20934 1.21384 0.89466 0.94843 0.94333 1.22905 1.02414 0.94811 1.00513 1.23038 0.99522 0.95299 1.02241 1.22993 0.91367 1.03693 1.03145 1.85388 0.91439 1.02524 1.64688 0.91766 0.91754 0.87790 0.83210 0.82403 0.93651 0.94288 0.92682 0.87819 0.90819 0.87283 0.88180 0.88824 0.88546 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.89 10.41 -40.84 -0.43 -4.31 16 3 C 0.54 7.10 7.94 34.28 0.27 7.37 16 4 O -0.50 -7.52 16.61 -19.30 -0.32 -7.84 16 5 C -0.29 -3.85 6.46 -36.59 -0.24 -4.09 16 6 C -0.05 -0.69 9.88 -40.67 -0.40 -1.09 16 7 C -0.10 -1.38 9.89 -40.69 -0.40 -1.78 16 8 C -0.21 -3.46 6.20 -36.52 -0.23 -3.68 16 9 C 0.57 11.80 7.61 -12.62 -0.10 11.70 16 10 O -0.51 -12.76 16.47 5.26 0.09 -12.67 16 11 N -0.58 -11.88 2.46 -176.41 -0.43 -12.31 16 12 C 0.25 6.22 5.10 -5.19 -0.03 6.19 16 13 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.13 1.95 5.20 -4.04 -0.02 1.93 16 22 C -0.19 -2.38 3.66 -90.62 -0.33 -2.71 16 23 C -0.16 -1.87 10.18 -26.69 -0.27 -2.14 16 24 C -0.17 -1.71 9.44 -26.69 -0.25 -1.96 16 25 S 0.29 3.64 15.07 -107.50 -1.62 2.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.15 1.70 8.04 -52.49 -0.42 1.28 16 30 H 0.16 2.20 8.05 -52.49 -0.42 1.78 16 31 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 32 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.10 1.62 7.77 -51.93 -0.40 1.22 16 35 H 0.07 1.04 4.92 -25.80 -0.13 0.91 16 36 H 0.11 1.50 7.65 -51.93 -0.40 1.10 16 37 H 0.10 1.16 8.03 -51.93 -0.42 0.75 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -32.90 357.16 -8.04 -40.94 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.08 Total: -0.49 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.35 Total: -2.08 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.30 Total: -37.34 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.66 Total: -24.83 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.62 Total: 2.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.90 -8.04 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.636 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds