Wall clock time and date at job start Sat Apr 11 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47068 * 340.76727 * 3 2 1 5 5 C 1.35904 * 117.00126 * 179.97438 * 4 3 2 6 6 C 1.38758 * 120.05175 * 0.25077 * 5 4 3 7 7 C 1.38123 * 119.94156 * 180.32208 * 6 5 4 8 8 C 1.38296 * 120.05444 * 359.67542 * 7 6 5 9 9 C 1.38240 * 120.11004 * 0.03117 * 8 7 6 10 10 C 1.38165 * 120.05959 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.03120 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46793 * 260.00109 * 11 10 9 13 13 S 1.65597 * 119.99791 * 165.00139 * 12 11 10 14 14 O 1.42101 * 104.27612 * 181.07220 * 13 12 11 15 15 O 1.42101 * 104.27805 * 308.92463 * 13 12 11 16 16 C 1.81397 * 104.45432 * 64.99519 * 13 12 11 17 17 C 1.52999 * 109.47238 * 179.97438 * 16 13 12 18 18 C 1.50707 * 109.46757 * 180.02562 * 17 16 13 19 19 H 1.07996 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99585 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00186 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99852 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46895 * 90.00307 * 22 20 18 24 24 H 1.48499 * 109.47205 * 210.00204 * 22 20 18 25 25 H 1.48502 * 109.47112 * 330.00596 * 22 20 18 26 26 H 4.38448 * 5.44383 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47111 * 220.76741 * 3 2 1 28 28 H 1.09003 * 109.46856 * 100.76707 * 3 2 1 29 29 H 1.07999 * 120.02719 * 0.02562 * 6 5 4 30 30 H 1.07992 * 119.97506 * 179.70509 * 7 6 5 31 31 H 1.07995 * 119.93908 * 180.02562 * 8 7 6 32 32 H 1.07999 * 119.97158 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.47498 * 140.00101 * 11 10 9 34 34 H 1.09002 * 109.46794 * 19.99598 * 11 10 9 35 35 H 0.96995 * 120.00050 * 344.72224 * 12 11 10 36 36 H 1.09000 * 109.46873 * 300.00475 * 16 13 12 37 37 H 1.09004 * 109.46684 * 59.99917 * 16 13 12 38 38 H 1.09002 * 109.47112 * 300.00009 * 17 16 13 39 39 H 1.08998 * 109.46926 * 60.00162 * 17 16 13 40 40 H 0.96999 * 120.00163 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2712 0.4438 5 6 4.4703 -1.4390 0.5020 6 6 5.3161 -0.3988 0.1442 7 6 6.6852 -0.5739 0.1978 8 6 7.2130 -1.7825 0.6140 9 6 6.3724 -2.8183 0.9767 10 6 5.0023 -2.6486 0.9238 11 6 4.0865 -3.7783 1.3188 12 7 3.5939 -4.4514 0.1143 13 16 2.8773 -5.9397 0.2320 14 8 2.5580 -6.2820 -1.1096 15 8 3.7998 -6.7142 0.9859 16 6 1.3660 -5.6401 1.1895 17 6 0.6060 -6.9559 1.3678 18 6 -0.6499 -6.7068 2.1628 19 1 -0.8828 -5.7097 2.5061 20 6 -1.5020 -7.7518 2.4509 21 7 -1.2186 -8.9659 2.0324 22 14 -3.0583 -7.4432 3.4369 23 1 -4.1732 -7.1155 2.5123 24 1 -3.4015 -8.6610 4.2142 25 1 -2.8374 -6.3075 4.3679 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0090 0.7791 0.6711 28 1 3.0092 0.1928 -1.0096 29 1 4.9043 0.5453 -0.1804 30 1 7.3439 0.2337 -0.0850 31 1 8.2837 -1.9173 0.6556 32 1 6.7871 -3.7613 1.3010 33 1 3.2431 -3.3818 1.8840 34 1 4.6341 -4.4913 1.9352 35 1 3.6838 -4.0236 -0.7515 36 1 1.6294 -5.2368 2.1673 37 1 0.7358 -4.9258 0.6596 38 1 0.3426 -7.3588 0.3898 39 1 1.2360 -7.6705 1.8975 40 1 -1.8183 -9.7010 2.2348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265138605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:19 Heat of formation + Delta-G solvation = -34.647330 kcal Electronic energy + Delta-G solvation = -24385.588980 eV Core-core repulsion = 20680.485991 eV Total energy + Delta-G solvation = -3705.102989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61855 -37.94138 -36.51887 -35.44767 -35.21539 -33.84069 -33.67344 -31.22347 -31.10514 -30.23815 -27.82878 -25.70724 -25.54351 -22.64954 -21.81112 -21.57701 -18.87005 -18.70715 -18.48868 -17.42603 -16.69460 -16.40829 -16.31908 -16.03689 -15.51239 -15.32935 -14.81312 -14.55609 -14.48746 -14.46152 -13.56768 -13.36297 -13.12240 -12.93367 -12.90806 -12.46597 -11.96593 -11.81398 -11.69103 -11.66596 -11.51508 -11.42751 -11.13673 -11.05043 -10.91550 -10.76422 -10.46841 -10.37926 -10.32945 -9.74918 -9.41797 -9.20557 -8.94156 -8.47239 -8.46849 -6.08938 -4.14048 0.77895 1.08239 1.15598 1.99871 2.48949 3.19990 3.28051 3.34098 3.35569 3.37136 3.57036 4.05837 4.30494 4.37380 4.42311 4.55358 4.63335 4.76529 4.82668 4.86867 5.03517 5.05660 5.26167 5.28393 5.43243 5.48650 5.58644 5.70455 5.76181 5.77896 5.95312 6.08606 6.16135 6.26902 6.48671 6.56339 7.06373 7.19832 7.25138 7.35308 7.41805 7.84453 8.22126 8.89398 9.50291 11.02175 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003521 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.175771 B = 7950.144785 C = 9433.459302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.211 4.211 3 C 0.175 3.825 4 O -0.301 6.301 5 C 0.144 3.856 6 C -0.213 4.213 7 C -0.076 4.076 8 C -0.158 4.158 9 C -0.062 4.062 10 C -0.123 4.123 11 C 0.165 3.835 12 N -1.120 6.120 13 S 2.594 3.406 14 O -0.968 6.968 15 O -0.968 6.968 16 C -0.589 4.589 17 C 0.028 3.972 18 C -0.518 4.518 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.225 0.775 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.412 0.588 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.614 21.518 -3.452 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.211 4.211 3 C 0.101 3.899 4 O -0.214 6.214 5 C 0.098 3.902 6 C -0.232 4.232 7 C -0.094 4.094 8 C -0.177 4.177 9 C -0.081 4.081 10 C -0.125 4.125 11 C 0.039 3.961 12 N -0.877 5.877 13 S 2.691 3.309 14 O -0.959 6.959 15 O -0.958 6.958 16 C -0.722 4.722 17 C -0.011 4.011 18 C -0.558 4.558 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.242 0.758 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.245 0.755 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.762 20.297 -3.595 24.785 hybrid contribution -1.362 1.076 0.383 1.778 sum 12.400 21.373 -3.212 24.918 Atomic orbital electron populations 1.25110 0.95963 0.96036 0.99140 1.22146 0.93470 1.03481 1.01998 1.19244 0.85210 0.84981 1.00435 1.86196 1.18997 1.34415 1.81809 1.18814 0.81952 0.93855 0.95606 1.21230 0.94507 0.99061 1.08409 1.20967 0.94235 0.97376 0.96864 1.21088 1.00043 0.93629 1.02911 1.21059 0.91493 0.99197 0.96324 1.19235 0.94198 0.93319 1.05777 1.19991 0.96598 0.92512 0.86975 1.55781 1.77055 1.40259 1.14620 1.05496 0.77164 0.72788 0.75414 1.93547 1.85761 1.81537 1.35037 1.93530 1.60748 1.67585 1.73942 1.30434 1.17681 1.10908 1.13212 1.18965 0.95789 0.87399 0.98978 1.21015 1.05378 0.94805 1.34592 0.92063 1.25067 0.98400 0.95062 0.95994 1.69955 1.37556 0.99743 1.45652 0.86477 0.83020 0.77799 0.80025 1.20513 1.21028 1.19767 0.75789 0.89649 0.89600 0.85303 0.85727 0.85651 0.84681 0.90624 0.89373 0.75499 0.86335 0.86104 0.94876 0.94814 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.21 -2.21 13.73 -37.12 -0.51 -2.72 16 3 C 0.18 1.50 5.21 34.37 0.18 1.68 16 4 O -0.30 -3.40 9.33 -19.44 -0.18 -3.58 16 5 C 0.14 1.51 6.66 -39.22 -0.26 1.25 16 6 C -0.21 -1.76 9.04 -39.43 -0.36 -2.11 16 7 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 8 C -0.16 -1.29 10.04 -39.56 -0.40 -1.68 16 9 C -0.06 -0.60 9.66 -39.61 -0.38 -0.98 16 10 C -0.12 -1.37 5.29 -104.47 -0.55 -1.93 16 11 C 0.17 2.09 5.92 -5.19 -0.03 2.06 16 12 N -1.12 -16.01 5.88 -11.65 -0.07 -16.08 16 13 S 2.59 48.33 5.46 -107.50 -0.59 47.75 16 14 O -0.97 -20.93 18.08 -57.54 -1.04 -21.97 16 15 O -0.97 -20.45 17.50 -57.54 -1.01 -21.46 16 16 C -0.59 -11.72 6.01 37.16 0.22 -11.49 16 17 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.23 1.43 7.80 -54.10 -0.42 1.01 16 27 H 0.09 0.54 7.65 -51.93 -0.40 0.15 16 28 H 0.09 0.57 7.67 -51.93 -0.40 0.17 16 29 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 30 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.14 1.16 8.04 -52.49 -0.42 0.74 16 33 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.09 1.08 7.56 -51.93 -0.39 0.68 16 35 H 0.41 5.38 8.61 -34.47 -0.30 5.08 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 37 H 0.12 2.22 8.14 -51.92 -0.42 1.80 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -36.94 367.02 -9.25 -46.19 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.15 Total: 3.77 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -2.47 Total: -30.49 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.67 Total: -42.14 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.23 Total: -47.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 48.33 SS G_CDS: -0.59 Total: 47.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.94 -9.25 -46.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265138605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.542 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds