Wall clock time and date at job start Sat Apr 11 2020 00:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47068 * 340.76727 * 3 2 1 5 5 C 1.35904 * 117.00126 * 179.97438 * 4 3 2 6 6 C 1.38758 * 120.05175 * 0.25077 * 5 4 3 7 7 C 1.38123 * 119.94156 * 180.32208 * 6 5 4 8 8 C 1.38296 * 120.05444 * 359.67542 * 7 6 5 9 9 C 1.38240 * 120.11004 * 0.03117 * 8 7 6 10 10 C 1.38165 * 120.05959 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.03120 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46793 * 260.00109 * 11 10 9 13 13 S 1.65597 * 119.99791 * 165.00139 * 12 11 10 14 14 O 1.42101 * 104.27612 * 181.07220 * 13 12 11 15 15 O 1.42101 * 104.27805 * 308.92463 * 13 12 11 16 16 C 1.81397 * 104.45432 * 64.99519 * 13 12 11 17 17 C 1.52999 * 109.47238 * 179.97438 * 16 13 12 18 18 C 1.50707 * 109.46757 * 180.02562 * 17 16 13 19 19 H 1.07996 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99585 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00186 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99852 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46895 * 90.00307 * 22 20 18 24 24 H 1.48499 * 109.47205 * 210.00204 * 22 20 18 25 25 H 1.48502 * 109.47112 * 330.00596 * 22 20 18 26 26 H 4.38448 * 5.44383 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47111 * 220.76741 * 3 2 1 28 28 H 1.09003 * 109.46856 * 100.76707 * 3 2 1 29 29 H 1.07999 * 120.02719 * 0.02562 * 6 5 4 30 30 H 1.07992 * 119.97506 * 179.70509 * 7 6 5 31 31 H 1.07995 * 119.93908 * 180.02562 * 8 7 6 32 32 H 1.07999 * 119.97158 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.47498 * 140.00101 * 11 10 9 34 34 H 1.09002 * 109.46794 * 19.99598 * 11 10 9 35 35 H 0.96995 * 120.00050 * 344.72224 * 12 11 10 36 36 H 1.09000 * 109.46873 * 300.00475 * 16 13 12 37 37 H 1.09004 * 109.46684 * 59.99917 * 16 13 12 38 38 H 1.09002 * 109.47112 * 300.00009 * 17 16 13 39 39 H 1.08998 * 109.46926 * 60.00162 * 17 16 13 40 40 H 0.96999 * 120.00163 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2712 0.4438 5 6 4.4703 -1.4390 0.5020 6 6 5.3161 -0.3988 0.1442 7 6 6.6852 -0.5739 0.1978 8 6 7.2130 -1.7825 0.6140 9 6 6.3724 -2.8183 0.9767 10 6 5.0023 -2.6486 0.9238 11 6 4.0865 -3.7783 1.3188 12 7 3.5939 -4.4514 0.1143 13 16 2.8773 -5.9397 0.2320 14 8 2.5580 -6.2820 -1.1096 15 8 3.7998 -6.7142 0.9859 16 6 1.3660 -5.6401 1.1895 17 6 0.6060 -6.9559 1.3678 18 6 -0.6499 -6.7068 2.1628 19 1 -0.8828 -5.7097 2.5061 20 6 -1.5020 -7.7518 2.4509 21 7 -1.2186 -8.9659 2.0324 22 14 -3.0583 -7.4432 3.4369 23 1 -4.1732 -7.1155 2.5123 24 1 -3.4015 -8.6610 4.2142 25 1 -2.8374 -6.3075 4.3679 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0090 0.7791 0.6711 28 1 3.0092 0.1928 -1.0096 29 1 4.9043 0.5453 -0.1804 30 1 7.3439 0.2337 -0.0850 31 1 8.2837 -1.9173 0.6556 32 1 6.7871 -3.7613 1.3010 33 1 3.2431 -3.3818 1.8840 34 1 4.6341 -4.4913 1.9352 35 1 3.6838 -4.0236 -0.7515 36 1 1.6294 -5.2368 2.1673 37 1 0.7358 -4.9258 0.6596 38 1 0.3426 -7.3588 0.3898 39 1 1.2360 -7.6705 1.8975 40 1 -1.8183 -9.7010 2.2348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265138605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:18 Heat of formation + Delta-G solvation = -60.861444 kcal Electronic energy + Delta-G solvation = -24386.725710 eV Core-core repulsion = 20680.485991 eV Total energy + Delta-G solvation = -3706.239718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30867 -38.64485 -38.15636 -37.03561 -36.32579 -35.89624 -34.37196 -33.12797 -32.03540 -30.90608 -28.48248 -27.59182 -26.61675 -23.59863 -23.30738 -22.51978 -20.33670 -19.39243 -19.23670 -19.05708 -18.29982 -17.54583 -17.17120 -16.96549 -16.88120 -16.55424 -16.41995 -15.82901 -15.42407 -15.27766 -15.04337 -14.49446 -14.36439 -13.99234 -13.76475 -13.70943 -13.57613 -13.21442 -13.12399 -13.09488 -12.93329 -12.78984 -12.48061 -12.41505 -12.25103 -12.14079 -11.94088 -11.74942 -11.47803 -11.20495 -11.12916 -10.64673 -10.36314 -9.88053 -9.15355 -8.25864 -6.39922 -0.69696 0.33044 0.48757 1.29407 1.40232 1.42458 1.53697 1.77240 1.88872 2.38063 2.67568 2.78837 2.84302 3.07255 3.26429 3.43283 3.66078 3.88579 3.99723 4.03944 4.12342 4.19966 4.32403 4.35987 4.39305 4.50114 4.63541 4.74906 4.78578 4.88545 4.96593 5.07233 5.26795 5.28064 5.37238 5.51017 5.61649 5.68281 5.86108 6.05821 6.08103 6.40472 6.54686 6.73209 7.29950 8.86504 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003521 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.175771 B = 7950.144785 C = 9433.459302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.241 4.241 3 C 0.168 3.832 4 O -0.324 6.324 5 C 0.131 3.869 6 C -0.212 4.212 7 C -0.072 4.072 8 C -0.160 4.160 9 C -0.074 4.074 10 C -0.145 4.145 11 C 0.158 3.842 12 N -1.102 6.102 13 S 2.623 3.377 14 O -1.000 7.000 15 O -0.993 6.993 16 C -0.587 4.587 17 C 0.021 3.979 18 C -0.539 4.539 19 H 0.074 0.926 20 C -0.004 4.004 21 N -0.934 5.934 22 Si 0.975 3.025 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.258 1.258 26 H 0.248 0.752 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.420 0.580 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.006 0.994 39 H 0.009 0.991 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.128 24.434 -3.095 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.241 4.241 3 C 0.095 3.905 4 O -0.239 6.239 5 C 0.085 3.915 6 C -0.231 4.231 7 C -0.090 4.090 8 C -0.178 4.178 9 C -0.092 4.092 10 C -0.147 4.147 11 C 0.033 3.967 12 N -0.862 5.862 13 S 2.719 3.281 14 O -0.990 6.990 15 O -0.983 6.983 16 C -0.719 4.719 17 C -0.018 4.018 18 C -0.578 4.578 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.573 5.573 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.182 1.182 26 H 0.264 0.736 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.256 0.744 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.024 0.976 39 H 0.027 0.973 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.274 23.228 -3.240 27.455 hybrid contribution -1.425 0.259 0.242 1.468 sum 12.849 23.487 -2.999 26.940 Atomic orbital electron populations 1.25876 0.96971 0.95441 0.98778 1.22854 0.94663 1.04088 1.02497 1.19544 0.84332 0.84590 1.02036 1.86139 1.19595 1.35911 1.82236 1.18961 0.82016 0.94299 0.96201 1.21549 0.94683 0.99380 1.07467 1.21379 0.94405 0.97855 0.95338 1.21396 1.01026 0.93381 1.02037 1.21220 0.91235 1.00088 0.96703 1.19171 0.94483 0.93194 1.07879 1.20171 0.97301 0.93181 0.86059 1.55346 1.75997 1.38961 1.15928 1.04377 0.76343 0.73326 0.74017 1.93496 1.86159 1.82802 1.36539 1.93493 1.61218 1.69208 1.74407 1.30331 1.18323 1.08029 1.15267 1.18828 0.96003 0.89959 0.97018 1.21500 1.06136 0.95493 1.34684 0.90816 1.26123 1.02291 0.94686 0.97127 1.70101 1.39178 1.00894 1.47153 0.85303 0.78274 0.78091 0.78528 1.19549 1.20708 1.18199 0.73608 0.87492 0.87708 0.82814 0.82736 0.83522 0.84423 0.90285 0.89340 0.74439 0.84190 0.84461 0.97551 0.97255 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 19.25 74.32 1.43 -1.37 16 2 C -0.24 -4.78 13.73 31.12 0.43 -4.36 16 3 C 0.17 2.58 5.21 70.18 0.37 2.95 16 4 O -0.32 -6.91 9.33 -92.47 -0.86 -7.78 16 5 C 0.13 2.54 6.66 22.51 0.15 2.69 16 6 C -0.21 -2.87 9.04 22.37 0.20 -2.67 16 7 C -0.07 -0.83 10.04 22.26 0.22 -0.61 16 8 C -0.16 -2.17 10.04 22.28 0.22 -1.95 16 9 C -0.07 -1.33 9.66 22.25 0.22 -1.11 16 10 C -0.14 -3.08 5.29 -19.77 -0.10 -3.19 16 11 C 0.16 3.92 5.92 85.63 0.51 4.43 16 12 N -1.10 -31.12 5.88 -190.78 -1.12 -32.24 16 13 S 2.62 99.25 5.46 -56.49 -0.31 98.94 16 14 O -1.00 -44.10 18.08 -127.65 -2.31 -46.41 16 15 O -0.99 -42.80 17.50 -127.65 -2.23 -45.03 16 16 C -0.59 -23.56 6.01 71.98 0.43 -23.13 16 17 C 0.02 1.12 4.98 29.85 0.15 1.27 16 18 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 19 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 20 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 21 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 22 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.25 2.79 7.80 -4.43 -0.03 2.76 16 27 H 0.11 1.11 7.65 -2.39 -0.02 1.09 16 28 H 0.11 1.14 7.67 -2.39 -0.02 1.12 16 29 H 0.15 1.21 6.30 -2.91 -0.02 1.19 16 30 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.14 2.27 8.04 -2.91 -0.02 2.25 16 33 H 0.08 1.89 7.86 -2.39 -0.02 1.87 16 34 H 0.09 2.16 7.56 -2.39 -0.02 2.14 16 35 H 0.42 10.75 8.61 -96.75 -0.83 9.92 16 36 H 0.14 4.94 8.14 -2.39 -0.02 4.92 16 37 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -80.96 367.02 0.62 -80.35 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.22 Total: 20.74 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 4.92 Total: -57.18 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -0.84 Total: -89.54 kcal Atomic # 8 Polarization: -93.82 SS G_CDS: -5.40 Total: -99.22 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 99.25 SS G_CDS: -0.31 Total: 98.94 kcal Total: -80.96 0.62 -80.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265138605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.488 kcal (2) G-P(sol) polarization free energy of solvation -80.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds