Wall clock time and date at job start Sat Apr 11 2020 00:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34221 * 116.99999 * 2 1 4 4 O 1.20835 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00260 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46750 * 299.99941 * 5 3 2 7 7 C 1.50704 * 109.47247 * 59.99472 * 5 3 2 8 8 C 1.38228 * 119.99780 * 61.58072 * 7 5 3 9 9 C 1.38238 * 120.00123 * 179.81083 * 8 7 5 10 10 C 1.38237 * 119.99705 * 0.40159 * 9 8 7 11 11 C 1.38241 * 119.99617 * 359.85766 * 10 9 8 12 12 C 1.38228 * 119.99714 * 241.86403 * 7 5 3 13 13 N 1.46498 * 109.47514 * 179.97438 * 5 3 2 14 14 C 1.46499 * 119.99860 * 245.78742 * 13 5 3 15 15 C 1.34779 * 119.99995 * 65.78170 * 13 5 3 16 16 O 1.21288 * 119.99792 * 0.02562 * 15 13 5 17 17 C 1.50700 * 120.00068 * 180.02562 * 15 13 5 18 18 S 1.81002 * 109.47068 * 180.02562 * 17 15 13 19 19 C 1.76204 * 99.99934 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99558 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99994 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99663 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00117 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47058 * 89.99715 * 23 21 19 25 25 H 1.48498 * 109.47217 * 210.00112 * 23 21 19 26 26 H 1.48504 * 109.47137 * 329.99951 * 23 21 19 27 27 H 1.09000 * 109.47155 * 300.00527 * 1 2 3 28 28 H 1.08997 * 109.46791 * 60.00580 * 1 2 3 29 29 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08009 * 120.00158 * 0.02562 * 8 7 5 31 31 H 1.07993 * 120.00239 * 180.23636 * 9 8 7 32 32 H 1.07994 * 120.00156 * 179.83385 * 10 9 8 33 33 H 1.08000 * 119.99285 * 179.97438 * 11 10 9 34 34 H 1.07998 * 120.00591 * 359.97212 * 12 7 5 35 35 H 1.08996 * 109.47440 * 84.34727 * 14 13 5 36 36 H 1.09007 * 109.46443 * 204.34208 * 14 13 5 37 37 H 1.09002 * 109.47259 * 324.33597 * 14 13 5 38 38 H 1.08995 * 109.47174 * 300.00260 * 17 15 13 39 39 H 1.09008 * 109.46620 * 60.00193 * 17 15 13 40 40 H 0.97009 * 119.99829 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1058 0.5914 -1.2295 8 6 3.7742 1.0653 -2.4849 9 6 4.2721 0.4408 -3.6132 10 6 5.0949 -0.6628 -3.4861 11 6 5.4221 -1.1399 -2.2306 12 6 4.9273 -0.5130 -1.1023 13 7 3.9818 2.6797 -0.0002 14 6 4.6890 3.2338 -1.1573 15 6 3.7133 3.4624 1.0637 16 8 3.1281 3.0035 2.0219 17 6 4.1401 4.9077 1.0627 18 16 3.6400 5.6855 2.6187 19 6 4.2455 7.3187 2.3528 20 1 4.7498 7.5640 1.4298 21 6 4.0744 8.2899 3.3296 22 7 4.5264 9.5100 3.1307 23 14 3.2016 7.8658 4.9256 24 1 4.1952 7.3920 5.9224 25 1 2.5124 9.0726 5.4488 26 1 2.2033 6.7954 4.6746 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1289 1.9257 -2.5843 31 1 4.0162 0.8134 -4.5940 32 1 5.4817 -1.1523 -4.3675 33 1 6.0646 -2.0023 -2.1313 34 1 5.1830 -0.8858 -0.1215 35 1 3.9652 3.5455 -1.9104 36 1 5.2804 4.0942 -0.8438 37 1 5.3476 2.4743 -1.5786 38 1 5.2235 4.9665 0.9593 39 1 3.6667 5.4257 0.2285 40 1 4.4071 10.1887 3.8135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265598134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:21 Heat of formation + Delta-G solvation = -73.817425 kcal Electronic energy + Delta-G solvation = -25013.908534 eV Core-core repulsion = 21307.107002 eV Total energy + Delta-G solvation = -3706.801532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20589 -39.57841 -39.00514 -36.48881 -35.59283 -32.53075 -32.41359 -31.31770 -29.63512 -28.62661 -27.38238 -25.73650 -25.45152 -23.00510 -22.42871 -21.24735 -19.37801 -18.01355 -17.67693 -17.26933 -17.11303 -16.66527 -16.20365 -15.91196 -15.27934 -15.14303 -14.96571 -14.70474 -13.92882 -13.89032 -13.64653 -13.53780 -13.26381 -13.12057 -13.02753 -12.78530 -12.56994 -12.25496 -12.19942 -11.92348 -11.51987 -11.39251 -11.23540 -10.98803 -10.84975 -10.64313 -10.58711 -9.84983 -9.59305 -9.25359 -9.17104 -8.98210 -8.76623 -8.46181 -6.88920 -6.26871 -3.98072 0.83982 1.03845 2.17170 2.26171 2.76499 3.03308 3.15248 3.34718 3.49411 3.53471 3.64598 4.06889 4.35480 4.46942 4.61377 4.64782 4.72945 4.77493 4.92215 4.99910 5.03448 5.08837 5.11587 5.12374 5.21377 5.30190 5.37956 5.41040 5.52196 5.63336 5.69604 5.79969 6.02204 6.05679 6.10453 6.14688 6.23065 6.34746 6.57946 7.30250 7.70580 7.96269 8.37884 8.43563 9.19528 10.82383 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.003342 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.655027 B = 8376.098975 C = 9264.296487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.453 3.547 4 O -0.478 6.478 5 C 0.207 3.793 6 H 0.122 0.878 7 C -0.094 4.094 8 C -0.100 4.100 9 C -0.120 4.120 10 C -0.109 4.109 11 C -0.120 4.120 12 C -0.089 4.089 13 N -0.606 5.606 14 C 0.073 3.927 15 C 0.542 3.458 16 O -0.508 6.508 17 C -0.116 4.116 18 S -0.141 6.141 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -23.744 -14.857 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.292 3.708 4 O -0.363 6.363 5 C 0.102 3.898 6 H 0.139 0.861 7 C -0.095 4.095 8 C -0.118 4.118 9 C -0.138 4.138 10 C -0.127 4.127 11 C -0.138 4.138 12 C -0.108 4.108 13 N -0.344 5.344 14 C -0.069 4.069 15 C 0.330 3.670 16 O -0.381 6.381 17 C -0.267 4.267 18 S 0.085 5.915 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.892 -23.896 -13.350 27.387 hybrid contribution 0.104 0.781 -0.477 0.921 sum -0.788 -23.115 -13.827 26.946 Atomic orbital electron populations 1.23252 0.76332 1.03444 1.02699 1.86472 1.23365 1.33130 1.84396 1.23913 0.91944 0.81835 0.73070 1.90728 1.66244 1.36165 1.43131 1.19148 0.87344 0.84395 0.98957 0.86090 1.19318 1.00055 0.97331 0.92780 1.21200 0.99223 0.99571 0.91854 1.21129 0.98055 0.96175 0.98424 1.21254 0.97527 0.96288 0.97635 1.21149 1.00208 1.00144 0.92273 1.21037 0.95862 0.94360 0.99507 1.47708 1.59191 1.08438 1.19014 1.22088 0.96740 0.99963 0.88152 1.20317 0.77843 0.87657 0.81174 1.90693 1.39191 1.74424 1.33817 1.23287 1.04655 0.93385 1.05355 1.84812 1.77621 1.10216 1.18845 1.22310 1.43348 0.93159 1.07918 0.89362 1.24695 0.94329 0.93961 0.98272 1.69939 1.44617 1.02171 1.35029 0.86745 0.81725 0.79763 0.83705 1.19197 1.19942 1.15904 0.91686 0.92073 0.88171 0.85652 0.85607 0.85790 0.85522 0.85272 0.92357 0.89684 0.90516 0.88343 0.88280 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.64 10.48 -39.23 -0.41 -5.05 16 3 C 0.45 6.90 6.41 36.01 0.23 7.13 16 4 O -0.48 -9.00 14.89 -23.80 -0.35 -9.36 16 5 C 0.21 2.72 2.73 -70.23 -0.19 2.53 16 6 H 0.12 1.52 7.86 -51.93 -0.41 1.12 16 7 C -0.09 -0.94 3.67 -104.63 -0.38 -1.33 16 8 C -0.10 -0.93 6.88 -39.58 -0.27 -1.20 16 9 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 10 C -0.11 -0.72 10.05 -39.58 -0.40 -1.12 16 11 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 12 C -0.09 -0.74 9.67 -39.59 -0.38 -1.12 16 13 N -0.61 -8.88 2.75 -176.59 -0.49 -9.37 16 14 C 0.07 0.81 8.55 59.85 0.51 1.32 16 15 C 0.54 10.44 6.77 -10.98 -0.07 10.36 16 16 O -0.51 -11.56 14.84 -7.80 -0.12 -11.68 16 17 C -0.12 -2.37 4.63 36.01 0.17 -2.21 16 18 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 19 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 20 H 0.09 2.68 8.03 -52.48 -0.42 2.25 16 21 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 22 N -0.88 -26.86 13.97 55.49 0.78 -26.09 16 23 Si 0.86 22.17 27.74 -169.99 -4.71 17.46 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.13 1.23 6.70 -52.48 -0.35 0.88 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.88 7.95 -52.49 -0.42 0.47 16 35 H 0.06 0.60 6.95 -51.93 -0.36 0.24 16 36 H 0.08 0.92 6.24 -51.93 -0.32 0.60 16 37 H 0.08 0.70 5.95 -51.93 -0.31 0.39 16 38 H 0.10 1.81 7.42 -51.92 -0.39 1.43 16 39 H 0.10 1.93 8.11 -51.91 -0.42 1.51 16 40 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -36.96 351.82 -7.40 -44.36 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.09 Total: -1.04 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.31 Total: 1.17 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.29 Total: -35.46 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.88 Total: -26.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.96 -7.40 -44.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265598134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.456 kcal (2) G-P(sol) polarization free energy of solvation -36.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds