Wall clock time and date at job start Sat Apr 11 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34233 * 116.99673 * 2 1 4 4 O 1.20822 * 120.00326 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99276 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47583 * 60.00281 * 5 3 2 7 7 C 1.50698 * 109.47061 * 299.99825 * 5 3 2 8 8 C 1.38236 * 120.00231 * 298.38153 * 7 5 3 9 9 C 1.38232 * 120.00133 * 179.78468 * 8 7 5 10 10 C 1.38235 * 119.99768 * 0.45408 * 9 8 7 11 11 C 1.38236 * 120.00187 * 359.80302 * 10 9 8 12 12 C 1.38231 * 119.99903 * 359.97438 * 11 10 9 13 13 N 1.46505 * 109.46537 * 180.02562 * 5 3 2 14 14 C 1.46496 * 119.99973 * 115.34628 * 13 5 3 15 15 C 1.34775 * 119.99774 * 295.34430 * 13 5 3 16 16 O 1.21276 * 120.00455 * 0.02562 * 15 13 5 17 17 C 1.50701 * 119.99803 * 180.02562 * 15 13 5 18 18 S 1.80997 * 109.47262 * 179.97438 * 17 15 13 19 19 C 1.76200 * 100.00353 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99534 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00286 * 179.97438 * 19 18 17 22 22 N 1.31638 * 120.00069 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47146 * 90.00426 * 23 21 19 25 25 H 1.48497 * 109.47221 * 210.00393 * 23 21 19 26 26 H 1.48499 * 109.47139 * 330.00253 * 23 21 19 27 27 H 1.08997 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46832 * 300.00070 * 1 2 3 29 29 H 1.08996 * 109.47227 * 59.99614 * 1 2 3 30 30 H 1.08004 * 119.99737 * 0.02562 * 8 7 5 31 31 H 1.08001 * 120.00552 * 180.27638 * 9 8 7 32 32 H 1.08001 * 120.00039 * 179.83470 * 10 9 8 33 33 H 1.07998 * 120.00166 * 180.02562 * 11 10 9 34 34 H 1.08002 * 119.99994 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47139 * 275.39321 * 14 13 5 36 36 H 1.09001 * 109.47232 * 155.38897 * 14 13 5 37 37 H 1.09007 * 109.47285 * 35.39454 * 14 13 5 38 38 H 1.09005 * 109.46833 * 299.99544 * 17 15 13 39 39 H 1.09001 * 109.47387 * 59.99305 * 17 15 13 40 40 H 0.96996 * 119.99648 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7810 -0.8908 7 6 4.1056 0.5914 1.2295 8 6 3.7748 1.0660 2.4850 9 6 4.2658 0.4364 3.6134 10 6 5.0953 -0.6620 3.4862 11 6 5.4305 -1.1334 2.2307 12 6 4.9358 -0.5066 1.1024 13 7 3.9817 2.6798 0.0002 14 6 4.7107 3.2275 1.1468 15 6 3.6932 3.4683 -1.0541 16 8 3.0893 3.0150 -2.0031 17 6 4.1209 4.9133 -1.0536 18 16 3.5914 5.6999 -2.5953 19 6 4.2031 7.3312 -2.3325 20 1 4.7260 7.5710 -1.4185 21 6 4.0138 8.3077 -3.3004 22 7 3.3768 8.0153 -4.4147 23 14 4.6629 10.0371 -3.0220 24 1 6.0482 10.1364 -3.5477 25 1 3.7940 11.0117 -3.7292 26 1 4.6625 10.3378 -1.5678 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.1294 1.9263 2.5843 31 1 4.0037 0.8044 4.5944 32 1 5.4812 -1.1523 4.3678 33 1 6.0783 -1.9918 2.1313 34 1 5.1973 -0.8751 0.1214 35 1 4.0012 3.5390 1.9132 36 1 5.2998 4.0867 0.8261 37 1 5.3737 2.4641 1.5541 38 1 3.6642 5.4271 -0.2076 39 1 5.2063 4.9710 -0.9708 40 1 3.2442 8.6979 -5.0909 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265598137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:24 Heat of formation + Delta-G solvation = -97.600511 kcal Electronic energy + Delta-G solvation = -24964.636616 eV Core-core repulsion = 21256.803772 eV Total energy + Delta-G solvation = -3707.832844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28985 -40.62817 -40.00074 -37.65385 -36.75725 -34.59709 -33.48923 -31.90916 -30.77714 -29.70971 -28.31900 -27.70478 -26.56457 -23.64456 -23.23608 -22.25137 -20.68280 -19.65629 -18.97670 -18.41471 -18.20736 -17.66717 -17.20119 -17.05676 -16.88716 -16.37338 -16.02086 -15.95476 -15.40852 -14.86105 -14.62859 -14.55559 -14.39956 -14.31157 -14.07097 -13.88500 -13.58028 -13.39110 -13.17623 -13.09478 -12.99098 -12.88477 -12.62003 -12.24322 -11.97622 -11.89512 -11.76110 -11.71873 -11.15001 -11.05631 -10.29896 -10.04770 -9.83295 -9.72898 -8.69582 -8.35497 -6.14570 0.19985 0.47123 1.02702 1.09526 1.30876 1.42440 1.45929 1.55796 1.71757 2.09100 2.26044 2.87745 2.98568 3.16402 3.31288 3.65877 3.68389 3.87432 4.04410 4.10683 4.19635 4.21788 4.23697 4.24792 4.31463 4.41147 4.55522 4.59042 4.60397 4.65340 4.80930 4.93996 5.12810 5.15616 5.24638 5.40439 5.51368 5.54151 5.60894 6.02449 6.07030 6.18931 6.57455 7.00351 7.05251 8.74008 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.003192 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.261234 B = 8768.834251 C = 9693.240081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.453 3.547 4 O -0.524 6.524 5 C 0.205 3.795 6 H 0.121 0.879 7 C -0.107 4.107 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.103 4.103 11 C -0.117 4.117 12 C -0.094 4.094 13 N -0.597 5.597 14 C 0.069 3.931 15 C 0.540 3.460 16 O -0.554 6.554 17 C -0.120 4.120 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.141 0.859 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -20.955 20.393 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.294 3.706 4 O -0.411 6.411 5 C 0.100 3.900 6 H 0.139 0.861 7 C -0.108 4.108 8 C -0.130 4.130 9 C -0.138 4.138 10 C -0.121 4.121 11 C -0.135 4.135 12 C -0.113 4.113 13 N -0.332 5.332 14 C -0.072 4.072 15 C 0.329 3.671 16 O -0.431 6.431 17 C -0.270 4.270 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.182 1.182 27 H 0.159 0.841 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.744 -21.274 18.843 28.664 hybrid contribution 0.146 1.838 0.507 1.912 sum 3.890 -19.436 19.350 27.700 Atomic orbital electron populations 1.23540 0.74865 1.05862 1.02053 1.86467 1.24843 1.31930 1.83775 1.24371 0.92836 0.81702 0.71674 1.90704 1.67372 1.37619 1.45439 1.19328 0.86221 0.83593 1.00873 0.86139 1.19130 1.01704 0.98478 0.91443 1.21153 0.99792 0.99737 0.92295 1.21364 0.97724 0.96200 0.98487 1.21629 0.96279 0.95589 0.98604 1.21473 0.99858 1.00423 0.91748 1.21226 0.95362 0.93862 1.00816 1.47679 1.57222 1.08772 1.19490 1.22312 0.96689 1.00859 0.87306 1.20165 0.77728 0.87580 0.81649 1.90667 1.40799 1.75410 1.36224 1.23350 1.05586 0.94233 1.03874 1.85623 1.76533 1.09444 1.20864 1.23192 1.42756 0.95600 1.07757 0.89789 1.26170 0.94872 1.04292 0.93888 1.70198 1.40342 1.36120 1.08221 0.84912 0.78222 0.75525 0.79054 1.19023 1.20353 1.18153 0.84127 0.91898 0.93270 0.87017 0.83762 0.83020 0.82979 0.84360 0.91508 0.89363 0.88134 0.87908 0.86593 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.35 -9.65 10.48 -51.44 -0.54 -10.19 16 3 C 0.45 14.81 6.39 71.24 0.45 15.26 16 4 O -0.52 -21.50 14.79 27.24 0.40 -21.10 16 5 C 0.21 5.65 2.75 43.50 0.12 5.77 16 6 H 0.12 3.27 7.87 -2.39 -0.02 3.25 16 7 C -0.11 -2.09 3.63 -19.87 -0.07 -2.16 16 8 C -0.11 -1.95 6.91 22.27 0.15 -1.80 16 9 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 10 C -0.10 -0.99 10.05 22.27 0.22 -0.76 16 11 C -0.12 -1.23 10.05 22.27 0.22 -1.01 16 12 C -0.09 -1.40 9.67 22.27 0.22 -1.18 16 13 N -0.60 -18.30 2.77 -831.04 -2.31 -20.60 16 14 C 0.07 1.50 8.54 127.77 1.09 2.59 16 15 C 0.54 22.47 6.75 87.66 0.59 23.07 16 16 O -0.55 -27.97 14.74 11.59 0.17 -27.80 16 17 C -0.12 -5.14 4.63 71.24 0.33 -4.81 16 18 S -0.15 -8.84 20.57 -56.49 -1.16 -10.01 16 19 C -0.55 -31.98 9.50 67.95 0.65 -31.34 16 20 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 21 C 0.01 0.72 5.49 84.85 0.47 1.18 16 22 N -0.91 -57.33 13.22 21.65 0.29 -57.04 16 23 Si 1.00 44.36 29.55 68.60 2.03 46.38 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.11 2.22 6.74 -2.91 -0.02 2.20 16 31 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16 34 H 0.14 1.72 7.95 -2.91 -0.02 1.70 16 35 H 0.07 1.34 6.95 -2.39 -0.02 1.33 16 36 H 0.09 1.82 6.25 -2.39 -0.01 1.81 16 37 H 0.10 1.69 6.01 -2.38 -0.01 1.68 16 38 H 0.10 4.16 8.11 -2.39 -0.02 4.14 16 39 H 0.12 4.36 7.42 -2.40 -0.02 4.34 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -85.72 354.41 5.80 -79.92 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.05 Total: 15.02 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.86 Total: 5.41 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.02 Total: -77.64 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: 0.03 Total: -59.09 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.01 kcal Total: -85.72 5.80 -79.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265598137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.682 kcal (2) G-P(sol) polarization free energy of solvation -85.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds