Wall clock time and date at job start Sat Apr 11 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50709 * 109.47097 * 2 1 4 4 O 1.21248 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.47167 * 120.00055 * 180.02562 * 3 2 1 6 6 C 1.39877 * 120.16934 * 0.22814 * 5 3 2 7 7 C 1.37865 * 119.82048 * 180.25370 * 6 5 3 8 8 C 1.38426 * 120.17546 * 359.51238 * 7 6 5 9 9 C 1.38386 * 120.34786 * 0.26122 * 8 7 6 10 10 S 1.76193 * 119.91768 * 179.97438 * 9 8 7 11 11 O 1.42096 * 106.40679 * 203.53890 * 10 9 8 12 12 O 1.42100 * 106.40152 * 336.45977 * 10 9 8 13 13 N 1.65607 * 107.21937 * 89.99457 * 10 9 8 14 14 C 1.36932 * 119.99545 * 90.00058 * 13 10 9 15 15 H 1.08004 * 120.00105 * 228.25456 * 14 13 10 16 16 C 1.38809 * 120.00025 * 48.26230 * 14 13 10 17 17 N 1.31621 * 120.00376 * 25.17332 * 16 14 13 18 18 Si 1.86805 * 119.99931 * 205.16881 * 16 14 13 19 19 H 1.48507 * 109.46851 * 90.00006 * 18 16 14 20 20 H 1.48498 * 109.47119 * 209.99746 * 18 16 14 21 21 H 1.48497 * 109.47247 * 330.00486 * 18 16 14 22 22 C 1.46494 * 120.00055 * 270.00404 * 13 10 9 23 23 C 1.53001 * 117.49884 * 189.08215 * 22 13 10 24 24 C 1.53002 * 117.49935 * 120.42627 * 22 13 10 25 25 C 1.37911 * 120.16989 * 359.97188 * 9 8 7 26 26 H 1.09001 * 109.47148 * 299.99911 * 1 2 3 27 27 H 1.09001 * 109.47310 * 60.00009 * 1 2 3 28 28 H 1.08996 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47412 * 239.99902 * 2 1 3 30 30 H 1.09005 * 109.47673 * 119.99338 * 2 1 3 31 31 H 1.08001 * 120.09011 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.91243 * 179.79079 * 7 6 5 33 33 H 1.07997 * 119.82711 * 180.27531 * 8 7 6 34 34 H 0.96997 * 120.00138 * 174.29880 * 17 16 14 35 35 H 1.09005 * 115.55157 * 334.75730 * 22 13 10 36 36 H 1.09001 * 117.49635 * 0.02562 * 23 22 13 37 37 H 1.09002 * 117.49709 * 145.02005 * 23 22 13 38 38 H 1.09006 * 117.49625 * 214.98384 * 24 22 13 39 39 H 1.09000 * 117.49904 * 359.96668 * 24 22 13 40 40 H 1.08004 * 120.08731 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2444 2.3425 -0.0005 5 6 3.4792 1.6898 -0.0006 6 6 4.3913 0.6294 -0.0059 7 6 5.7451 0.8895 -0.0011 8 6 6.2026 2.1960 -0.0012 9 6 5.3066 3.2506 -0.0007 10 16 5.9013 4.9091 -0.0001 11 8 4.8606 5.7085 0.5447 12 8 7.2132 4.8647 0.5441 13 7 6.0667 5.3711 -1.5818 14 6 5.0188 5.9625 -2.2354 15 1 4.7274 5.6137 -3.2152 16 6 4.3311 7.0103 -1.6388 17 7 4.9271 7.7589 -0.7351 18 14 2.5596 7.3582 -2.1188 19 1 1.6473 6.5856 -1.2377 20 1 2.2818 8.8091 -1.9684 21 1 2.3413 6.9561 -3.5315 22 6 7.3341 5.1472 -2.2816 23 6 7.4995 5.7818 -3.6640 24 6 7.3038 4.2692 -3.5343 25 6 3.9492 3.0068 -0.0006 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.0359 -0.3905 -0.0101 32 1 6.4507 0.0719 -0.0018 33 1 7.2644 2.3933 -0.0020 34 1 4.4764 8.5403 -0.3788 35 1 8.2178 5.0872 -1.6463 36 1 6.6655 6.3663 -4.0525 37 1 8.4921 6.1391 -3.9382 38 1 8.1677 3.6319 -3.7233 39 1 6.3410 3.8578 -3.8374 40 1 3.2511 3.8308 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269419485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:30 Heat of formation + Delta-G solvation = -69.643831 kcal Electronic energy + Delta-G solvation = -25903.787254 eV Core-core repulsion = 22197.166702 eV Total energy + Delta-G solvation = -3706.620551 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.11773 -39.25246 -38.80120 -37.72690 -36.21637 -35.12872 -34.06066 -32.51136 -32.27950 -32.05961 -26.88768 -26.57940 -24.37180 -23.29903 -23.00752 -22.25682 -21.10995 -20.66142 -19.11227 -18.32381 -17.74530 -17.09706 -16.95143 -16.89521 -16.48596 -16.39239 -16.09451 -15.63157 -15.39614 -14.98983 -14.80470 -14.39302 -14.15825 -13.73071 -13.55400 -13.26393 -13.16846 -13.10662 -13.04969 -12.84318 -12.61496 -12.57023 -12.42627 -12.35627 -12.13712 -12.06106 -12.04202 -11.68593 -11.46740 -10.99915 -10.74253 -10.59082 -10.32517 -10.08652 -9.35763 -8.49651 -6.13337 -0.47690 -0.07535 0.13309 1.30172 1.36510 1.47763 1.51120 2.23962 2.51322 2.82138 2.92704 2.95462 3.20287 3.44664 3.74971 3.85460 3.94696 4.01089 4.14985 4.20253 4.26745 4.28651 4.32278 4.39873 4.54809 4.63758 4.78702 4.85982 4.86671 4.95067 4.97658 5.04008 5.13816 5.21133 5.23072 5.26666 5.31991 5.42470 5.55217 5.78120 5.81230 6.21978 6.49801 6.96620 7.38288 8.56241 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.005898 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.645687 B = 4746.195442 C = 5893.975458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.389 3.611 4 O -0.503 6.503 5 C -0.212 4.212 6 C -0.017 4.017 7 C -0.143 4.143 8 C -0.015 4.015 9 C -0.694 4.694 10 S 2.568 3.432 11 O -0.987 6.987 12 O -1.034 7.034 13 N -0.798 5.798 14 C -0.291 4.291 15 H 0.093 0.907 16 C 0.024 3.976 17 N -0.818 5.818 18 Si 0.960 3.040 19 H -0.292 1.292 20 H -0.270 1.270 21 H -0.240 1.240 22 C 0.052 3.948 23 C -0.156 4.156 24 C -0.180 4.180 25 C 0.003 3.997 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.193 0.807 32 H 0.183 0.817 33 H 0.140 0.860 34 H 0.278 0.722 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -18.708 -4.014 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.270 3.730 4 O -0.381 6.381 5 C -0.214 4.214 6 C -0.035 4.035 7 C -0.161 4.161 8 C -0.034 4.034 9 C -0.776 4.776 10 S 2.672 3.328 11 O -0.976 6.976 12 O -1.024 7.024 13 N -0.621 5.621 14 C -0.436 4.436 15 H 0.110 0.890 16 C -0.191 4.191 17 N -0.454 5.454 18 Si 0.784 3.216 19 H -0.219 1.219 20 H -0.194 1.194 21 H -0.163 1.163 22 C -0.056 4.056 23 C -0.195 4.195 24 C -0.219 4.219 25 C -0.016 4.016 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.210 0.790 32 H 0.200 0.800 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.485 -17.790 -2.881 18.028 hybrid contribution -1.041 0.703 0.192 1.271 sum -1.526 -17.088 -2.689 17.365 Atomic orbital electron populations 1.21632 0.94077 1.03116 1.01558 1.22086 0.97947 0.91802 1.07561 1.23396 0.86937 0.93335 0.69382 1.90544 1.59137 1.50006 1.38417 1.20993 0.96729 0.93999 1.09690 1.22139 0.92167 0.99655 0.89519 1.21785 0.96894 0.96449 1.00948 1.21441 0.99417 0.92942 0.89629 1.32004 1.02225 1.28215 1.15120 1.09525 0.72351 0.74227 0.76745 1.93397 1.58693 1.66628 1.78843 1.93248 1.40701 1.88321 1.80093 1.52252 1.15259 1.63467 1.31129 1.19143 1.09322 1.11525 1.03657 0.88976 1.26420 1.03019 0.94320 0.95361 1.69881 1.38932 1.11967 1.24594 0.85434 0.78549 0.77929 0.79738 1.21924 1.19423 1.16284 1.21661 0.87136 1.07356 0.89471 1.23150 1.03332 0.95833 0.97221 1.23380 1.03396 0.93561 1.01579 1.20996 0.93759 0.97535 0.89333 0.93949 0.93848 0.88786 0.84828 0.84947 0.78996 0.79984 0.84207 0.91217 0.86663 0.89000 0.86857 0.86084 0.89605 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.20 71.98 0.66 -1.91 16 2 C -0.16 -2.48 5.03 29.85 0.15 -2.33 16 3 C 0.39 11.55 7.12 28.04 0.20 11.75 16 4 O -0.50 -20.23 15.97 -2.93 -0.05 -20.28 16 5 C -0.21 -6.80 5.87 -20.15 -0.12 -6.91 16 6 C -0.02 -0.36 9.47 22.58 0.21 -0.15 16 7 C -0.14 -3.24 10.03 22.23 0.22 -3.01 16 8 C -0.02 -0.51 9.52 22.35 0.21 -0.30 16 9 C -0.69 -30.18 5.97 22.23 0.13 -30.05 16 10 S 2.57 135.83 5.44 -56.49 -0.31 135.52 16 11 O -0.99 -60.44 13.26 -128.00 -1.70 -62.13 16 12 O -1.03 -56.46 16.05 -128.00 -2.05 -58.52 16 13 N -0.80 -39.74 3.06 -322.94 -0.99 -40.73 16 14 C -0.29 -15.01 7.67 84.03 0.64 -14.36 16 15 H 0.09 4.44 7.76 -2.91 -0.02 4.42 16 16 C 0.02 1.28 4.01 84.86 0.34 1.62 16 17 N -0.82 -48.19 11.51 21.65 0.25 -47.94 16 18 Si 0.96 44.21 29.63 68.60 2.03 46.24 16 19 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.24 -9.83 7.11 99.48 0.71 -9.13 16 22 C 0.05 2.13 6.39 44.99 0.29 2.42 16 23 C -0.16 -5.41 9.84 30.62 0.30 -5.11 16 24 C -0.18 -5.68 10.27 30.62 0.31 -5.37 16 25 C 0.00 0.15 9.07 22.58 0.20 0.36 16 26 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 27 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.13 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.13 1.25 8.10 -2.38 -0.02 1.23 16 31 H 0.19 1.67 7.05 -2.91 -0.02 1.65 16 32 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.14 4.45 7.60 -2.91 -0.02 4.43 16 34 H 0.28 15.60 8.32 -92.71 -0.77 14.83 16 35 H 0.12 4.72 7.37 -2.38 -0.02 4.70 16 36 H 0.09 3.51 6.99 -2.39 -0.02 3.49 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 39 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.10 5.14 7.20 -2.91 -0.02 5.12 16 Total: -1.00 -82.28 350.98 2.01 -80.28 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.05 Total: 20.91 kcal Atomic # 6 Polarization: -57.12 SS G_CDS: 3.77 Total: -53.36 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -0.74 Total: -88.66 kcal Atomic # 8 Polarization: -137.13 SS G_CDS: -3.80 Total: -140.93 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 135.83 SS G_CDS: -0.31 Total: 135.52 kcal Total: -82.28 2.01 -80.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269419485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.632 kcal (2) G-P(sol) polarization free energy of solvation -82.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds