Wall clock time and date at job start Sat Apr 11 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99748 * 2 1 4 4 O 1.21587 * 119.99883 * 175.76337 * 3 2 1 5 5 C 1.47637 * 120.00306 * 355.75963 * 3 2 1 6 6 C 1.40012 * 119.90054 * 221.57538 * 5 3 2 7 7 C 1.36315 * 120.11186 * 179.71681 * 6 5 3 8 8 C 1.40884 * 119.88781 * 0.53852 * 7 6 5 9 9 C 1.41108 * 120.10472 * 179.76027 * 8 7 6 10 10 H 1.07998 * 120.00506 * 209.13360 * 9 8 7 11 11 C 1.40231 * 119.99919 * 29.13879 * 9 8 7 12 12 N 1.30654 * 119.99827 * 10.57601 * 11 9 8 13 13 Si 1.86803 * 120.00222 * 190.58277 * 11 9 8 14 14 H 1.48500 * 109.46667 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47070 * 119.99611 * 13 11 9 16 16 H 1.48502 * 109.47067 * 239.99655 * 13 11 9 17 17 C 1.40896 * 119.79613 * 359.73844 * 8 7 6 18 18 C 1.36308 * 119.88573 * 0.02562 * 17 8 7 19 19 C 1.46500 * 119.99772 * 180.27051 * 2 1 3 20 20 H 1.09001 * 109.63936 * 180.42795 * 19 2 1 21 21 C 1.53874 * 109.64762 * 300.85495 * 19 2 1 22 22 C 1.54972 * 106.66207 * 167.15185 * 21 19 2 23 23 S 1.83288 * 102.47758 * 317.38878 * 22 21 19 24 24 O 1.42100 * 109.35057 * 269.89561 * 23 22 21 25 25 O 1.42100 * 109.47586 * 136.73258 * 23 22 21 26 26 C 1.54158 * 109.64526 * 59.99926 * 19 2 1 27 27 H 1.09004 * 109.47358 * 274.98233 * 1 2 3 28 28 H 1.09002 * 109.47104 * 34.98333 * 1 2 3 29 29 H 1.08990 * 109.47085 * 154.97788 * 1 2 3 30 30 H 1.08005 * 119.94510 * 0.02562 * 6 5 3 31 31 H 1.08003 * 120.05509 * 180.25608 * 7 6 5 32 32 H 0.96999 * 119.99571 * 180.02562 * 12 11 9 33 33 H 1.07994 * 120.05299 * 179.97438 * 17 8 7 34 34 H 1.08001 * 119.94340 * 180.02562 * 18 17 8 35 35 H 1.09003 * 110.03174 * 286.32859 * 21 19 2 36 36 H 1.09002 * 110.02762 * 47.74316 * 21 19 2 37 37 H 1.08992 * 110.75953 * 199.17865 * 22 21 19 38 38 H 1.09002 * 111.06669 * 75.72981 * 22 21 19 39 39 H 1.09000 * 110.32253 * 331.13765 * 26 19 2 40 40 H 1.09001 * 110.31630 * 93.23578 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3522 1.1687 0.0778 5 6 1.4037 2.4440 -0.0945 6 6 1.8930 3.4725 -0.9089 7 6 1.2147 4.6511 -1.0039 8 6 0.0253 4.8375 -0.2720 9 6 -0.6778 6.0575 -0.3630 10 1 -1.2672 6.4048 0.4727 11 6 -0.6114 6.8190 -1.5386 12 7 -0.0755 6.3111 -2.6165 13 14 -1.2890 8.5597 -1.5635 14 1 -1.8389 8.8959 -0.2257 15 1 -0.2001 9.5099 -1.9048 16 1 -2.3673 8.6566 -2.5801 17 6 -0.4601 3.8018 0.5507 18 6 0.2227 2.6251 0.6354 19 6 2.1975 -1.2687 -0.0060 20 1 3.2697 -1.0728 0.0026 21 6 1.8125 -2.0943 1.2342 22 6 2.3536 -3.5274 0.9995 23 16 1.9281 -3.8285 -0.7577 24 8 0.6366 -4.4160 -0.8354 25 8 3.0275 -4.4470 -1.4120 26 6 1.8279 -2.0746 -1.2671 27 1 -0.3634 0.0893 1.0238 28 1 -0.3633 0.8420 -0.5892 29 1 -0.3633 -0.9311 -0.4346 30 1 2.8068 3.3300 -1.4667 31 1 1.5907 5.4423 -1.6356 32 1 -0.0293 6.8381 -3.4296 33 1 -1.3711 3.9404 1.1138 34 1 -0.1488 1.8304 1.2655 35 1 2.2712 -1.6655 2.1252 36 1 0.7284 -2.1167 1.3459 37 1 1.8476 -4.2424 1.6481 38 1 3.4326 -3.5681 1.1487 39 1 0.8152 -1.8311 -1.5887 40 1 2.5382 -1.8704 -2.0684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270254187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:40 Heat of formation + Delta-G solvation = -77.037933 kcal Electronic energy + Delta-G solvation = -24840.589900 eV Core-core repulsion = 21133.648716 eV Total energy + Delta-G solvation = -3706.941184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91570 -37.61631 -37.27714 -36.60204 -36.23008 -34.16976 -33.50579 -30.44285 -29.93910 -29.34470 -26.92466 -26.24092 -24.91604 -22.40108 -21.22624 -20.70535 -19.15908 -19.05742 -17.62750 -17.24418 -17.07243 -16.34114 -15.98942 -15.74270 -15.42549 -14.96206 -14.47871 -14.23851 -14.08587 -13.93840 -13.30907 -13.10765 -12.80656 -12.67389 -12.46580 -12.41709 -12.32178 -12.28755 -12.19813 -12.00262 -11.79904 -11.50091 -11.38633 -11.23946 -11.03407 -10.95037 -10.65616 -10.61278 -10.06200 -9.59809 -9.45146 -9.16260 -8.55152 -7.76677 -7.55187 -6.98856 -4.65157 -0.24471 2.19363 2.22833 2.87654 2.93286 2.95486 2.99605 3.16725 3.29585 3.53820 3.74729 3.77609 4.08819 4.27155 4.38197 4.47693 4.53718 4.70504 5.10305 5.20274 5.23136 5.39119 5.44715 5.45705 5.53425 5.69478 5.81969 5.99130 6.05036 6.17285 6.63543 6.76479 6.80818 6.96283 7.05063 7.38883 7.49198 7.61243 7.81509 7.88899 8.03443 8.39074 8.61002 8.68725 8.73260 9.92955 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.031991 B = 0.002594 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.032955 B =10793.007703 C =10814.964428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.580 3.420 4 O -0.560 6.560 5 C -0.275 4.275 6 C -0.045 4.045 7 C -0.171 4.171 8 C 0.127 3.873 9 C -0.447 4.447 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.782 5.782 13 Si 0.915 3.085 14 H -0.259 1.259 15 H -0.270 1.270 16 H -0.272 1.272 17 C -0.230 4.230 18 C -0.059 4.059 19 C 0.150 3.850 20 H 0.121 0.879 21 C -0.132 4.132 22 C -0.583 4.583 23 S 2.391 3.609 24 O -0.937 6.937 25 O -0.939 6.939 26 C -0.610 4.610 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.285 0.715 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 -12.879 4.199 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.375 3.625 4 O -0.440 6.440 5 C -0.279 4.279 6 C -0.064 4.064 7 C -0.190 4.190 8 C 0.124 3.876 9 C -0.476 4.476 10 H 0.101 0.899 11 C -0.148 4.148 12 N -0.406 5.406 13 Si 0.739 3.261 14 H -0.182 1.182 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.250 4.250 18 C -0.078 4.078 19 C 0.044 3.956 20 H 0.138 0.862 21 C -0.172 4.172 22 C -0.714 4.714 23 S 2.574 3.426 24 O -0.934 6.934 25 O -0.936 6.936 26 C -0.740 4.740 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.643 -13.649 3.458 14.094 hybrid contribution -0.342 1.459 0.237 1.518 sum 0.300 -12.189 3.695 12.740 Atomic orbital electron populations 1.22092 0.79540 1.03383 1.02113 1.47737 1.06808 1.04343 1.75701 1.18876 0.86729 0.83536 0.73369 1.90656 1.14580 1.87486 1.51273 1.18777 1.01747 0.94598 1.12801 1.20387 0.97266 0.92781 0.95985 1.21048 0.95981 0.97270 1.04709 1.17796 0.89826 0.91586 0.88404 1.19827 1.25037 1.03060 0.99639 0.89865 1.26066 0.93617 1.00219 0.94891 1.69718 1.32372 1.37239 1.01233 0.86137 0.79290 0.80981 0.79692 1.18212 1.19493 1.19716 1.20743 1.01543 0.94411 1.08279 1.20579 0.93177 0.96955 0.97041 1.21252 1.00346 0.84693 0.89329 0.86157 1.22592 1.03077 0.90927 1.00555 1.30546 1.11659 1.05341 1.23834 1.08988 0.75586 0.78448 0.79596 1.93624 1.39418 1.74525 1.85785 1.93617 1.53904 1.73434 1.72609 1.31013 1.12598 1.22458 1.07958 0.92357 0.88977 0.91868 0.88786 0.85923 0.90392 0.88413 0.88350 0.87876 0.89012 0.84233 0.84149 0.83797 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 7.62 59.85 0.46 1.32 16 2 N -0.61 -8.84 2.79 -173.91 -0.48 -9.33 16 3 C 0.58 11.19 7.31 -12.42 -0.09 11.10 16 4 O -0.56 -12.26 16.28 5.29 0.09 -12.18 16 5 C -0.27 -5.82 5.15 -104.73 -0.54 -6.36 16 6 C -0.04 -1.03 9.58 -39.61 -0.38 -1.41 16 7 C -0.17 -4.19 8.59 -39.27 -0.34 -4.52 16 8 C 0.13 3.11 5.55 -106.80 -0.59 2.51 16 9 C -0.45 -10.84 9.05 -37.75 -0.34 -11.18 16 10 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 11 C 0.07 1.66 5.25 -17.30 -0.09 1.57 16 12 N -0.78 -18.68 10.84 55.56 0.60 -18.08 16 13 Si 0.92 17.20 29.57 -169.99 -5.03 12.17 16 14 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 15 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 16 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 17 C -0.23 -5.04 9.73 -39.27 -0.38 -5.42 16 18 C -0.06 -1.16 7.55 -39.61 -0.30 -1.46 16 19 C 0.15 1.69 2.94 -66.87 -0.20 1.49 16 20 H 0.12 1.48 6.92 -51.93 -0.36 1.12 16 21 C -0.13 -1.08 5.91 -25.23 -0.15 -1.23 16 22 C -0.58 -3.70 7.31 38.20 0.28 -3.42 16 23 S 2.39 21.40 6.10 -107.50 -0.66 20.75 16 24 O -0.94 -11.24 18.15 -57.73 -1.05 -12.28 16 25 O -0.94 -11.66 18.15 -57.73 -1.05 -12.71 16 26 C -0.61 -5.70 6.77 37.76 0.26 -5.44 16 27 H 0.06 0.63 6.84 -51.93 -0.36 0.27 16 28 H 0.09 1.32 6.01 -51.93 -0.31 1.00 16 29 H 0.06 0.59 6.45 -51.93 -0.33 0.25 16 30 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.12 3.11 6.23 -52.48 -0.33 2.79 16 32 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 33 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.10 1.62 5.54 -52.49 -0.29 1.32 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.65 7.34 -51.93 -0.38 0.27 16 37 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.14 1.26 6.28 -51.93 -0.33 0.93 16 40 H 0.14 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -32.72 337.98 -9.66 -42.38 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.77 Total: 6.64 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.41 Total: -22.45 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.12 Total: -27.40 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -2.01 Total: -37.17 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 21.40 SS G_CDS: -0.66 Total: 20.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.72 -9.66 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270254187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.658 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds