Wall clock time and date at job start Sat Apr 11 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99748 * 2 1 4 4 O 1.21587 * 119.99883 * 175.76337 * 3 2 1 5 5 C 1.47637 * 120.00306 * 355.75963 * 3 2 1 6 6 C 1.40012 * 119.90054 * 221.57538 * 5 3 2 7 7 C 1.36315 * 120.11186 * 179.71681 * 6 5 3 8 8 C 1.40884 * 119.88781 * 0.53852 * 7 6 5 9 9 C 1.41108 * 120.10472 * 179.76027 * 8 7 6 10 10 H 1.07998 * 120.00506 * 209.13360 * 9 8 7 11 11 C 1.40231 * 119.99919 * 29.13879 * 9 8 7 12 12 N 1.30654 * 119.99827 * 10.57601 * 11 9 8 13 13 Si 1.86803 * 120.00222 * 190.58277 * 11 9 8 14 14 H 1.48500 * 109.46667 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47070 * 119.99611 * 13 11 9 16 16 H 1.48502 * 109.47067 * 239.99655 * 13 11 9 17 17 C 1.40896 * 119.79613 * 359.73844 * 8 7 6 18 18 C 1.36308 * 119.88573 * 0.02562 * 17 8 7 19 19 C 1.46500 * 119.99772 * 180.27051 * 2 1 3 20 20 H 1.09001 * 109.63936 * 180.42795 * 19 2 1 21 21 C 1.53874 * 109.64762 * 300.85495 * 19 2 1 22 22 C 1.54972 * 106.66207 * 167.15185 * 21 19 2 23 23 S 1.83288 * 102.47758 * 317.38878 * 22 21 19 24 24 O 1.42100 * 109.35057 * 269.89561 * 23 22 21 25 25 O 1.42100 * 109.47586 * 136.73258 * 23 22 21 26 26 C 1.54158 * 109.64526 * 59.99926 * 19 2 1 27 27 H 1.09004 * 109.47358 * 274.98233 * 1 2 3 28 28 H 1.09002 * 109.47104 * 34.98333 * 1 2 3 29 29 H 1.08990 * 109.47085 * 154.97788 * 1 2 3 30 30 H 1.08005 * 119.94510 * 0.02562 * 6 5 3 31 31 H 1.08003 * 120.05509 * 180.25608 * 7 6 5 32 32 H 0.96999 * 119.99571 * 180.02562 * 12 11 9 33 33 H 1.07994 * 120.05299 * 179.97438 * 17 8 7 34 34 H 1.08001 * 119.94340 * 180.02562 * 18 17 8 35 35 H 1.09003 * 110.03174 * 286.32859 * 21 19 2 36 36 H 1.09002 * 110.02762 * 47.74316 * 21 19 2 37 37 H 1.08992 * 110.75953 * 199.17865 * 22 21 19 38 38 H 1.09002 * 111.06669 * 75.72981 * 22 21 19 39 39 H 1.09000 * 110.32253 * 331.13765 * 26 19 2 40 40 H 1.09001 * 110.31630 * 93.23578 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3522 1.1687 0.0778 5 6 1.4037 2.4440 -0.0945 6 6 1.8930 3.4725 -0.9089 7 6 1.2147 4.6511 -1.0039 8 6 0.0253 4.8375 -0.2720 9 6 -0.6778 6.0575 -0.3630 10 1 -1.2672 6.4048 0.4727 11 6 -0.6114 6.8190 -1.5386 12 7 -0.0755 6.3111 -2.6165 13 14 -1.2890 8.5597 -1.5635 14 1 -1.8389 8.8959 -0.2257 15 1 -0.2001 9.5099 -1.9048 16 1 -2.3673 8.6566 -2.5801 17 6 -0.4601 3.8018 0.5507 18 6 0.2227 2.6251 0.6354 19 6 2.1975 -1.2687 -0.0060 20 1 3.2697 -1.0728 0.0026 21 6 1.8125 -2.0943 1.2342 22 6 2.3536 -3.5274 0.9995 23 16 1.9281 -3.8285 -0.7577 24 8 0.6366 -4.4160 -0.8354 25 8 3.0275 -4.4470 -1.4120 26 6 1.8279 -2.0746 -1.2671 27 1 -0.3634 0.0893 1.0238 28 1 -0.3633 0.8420 -0.5892 29 1 -0.3633 -0.9311 -0.4346 30 1 2.8068 3.3300 -1.4667 31 1 1.5907 5.4423 -1.6356 32 1 -0.0293 6.8381 -3.4296 33 1 -1.3711 3.9404 1.1138 34 1 -0.1488 1.8304 1.2655 35 1 2.2712 -1.6655 2.1252 36 1 0.7284 -2.1167 1.3459 37 1 1.8476 -4.2424 1.6481 38 1 3.4326 -3.5681 1.1487 39 1 0.8152 -1.8311 -1.5887 40 1 2.5382 -1.8704 -2.0684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270254187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:40 Heat of formation + Delta-G solvation = -99.603727 kcal Electronic energy + Delta-G solvation = -24841.568426 eV Core-core repulsion = 21133.648716 eV Total energy + Delta-G solvation = -3707.919710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26948 -39.15184 -38.14949 -37.84979 -37.09149 -35.74944 -34.71340 -31.95045 -31.47979 -30.49300 -28.02916 -27.79288 -25.87483 -23.74386 -22.91786 -21.97576 -20.39218 -19.84875 -19.35685 -18.43559 -17.95350 -17.48562 -17.09948 -16.99639 -16.60383 -16.23378 -15.81451 -15.34326 -15.21159 -15.01120 -14.70578 -14.55048 -14.13515 -13.84182 -13.72377 -13.48930 -13.36712 -13.30496 -13.20039 -13.12109 -13.04082 -12.93441 -12.77750 -12.58029 -12.30430 -12.13594 -11.79115 -11.69997 -11.34354 -11.32485 -11.15407 -10.71588 -9.75636 -9.51658 -9.30767 -8.70401 -6.46919 -0.96445 0.52835 1.15056 1.39066 1.41484 1.49144 1.54683 1.94278 2.07910 2.18043 2.60144 2.73857 3.04693 3.30143 3.57814 3.65438 3.67782 3.85743 3.98978 4.07068 4.24054 4.38258 4.39521 4.52669 4.61535 4.72158 4.79537 4.90854 4.99200 5.02838 5.05491 5.06467 5.21324 5.28438 5.55507 5.62235 5.78446 5.97629 6.03608 6.23711 6.38867 6.59825 6.82129 6.91743 7.25509 8.24099 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.031991 B = 0.002594 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.032955 B =10793.007703 C =10814.964428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.601 5.601 3 C 0.577 3.423 4 O -0.595 6.595 5 C -0.276 4.276 6 C -0.059 4.059 7 C -0.192 4.192 8 C 0.099 3.901 9 C -0.480 4.480 10 H 0.087 0.913 11 C 0.032 3.968 12 N -0.816 5.816 13 Si 0.987 3.013 14 H -0.253 1.253 15 H -0.268 1.268 16 H -0.265 1.265 17 C -0.239 4.239 18 C -0.044 4.044 19 C 0.139 3.861 20 H 0.106 0.894 21 C -0.130 4.130 22 C -0.555 4.555 23 S 2.409 3.591 24 O -0.966 6.966 25 O -0.978 6.978 26 C -0.611 4.611 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.291 0.709 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -14.505 6.102 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.332 5.332 3 C 0.371 3.629 4 O -0.477 6.477 5 C -0.281 4.281 6 C -0.079 4.079 7 C -0.212 4.212 8 C 0.096 3.904 9 C -0.508 4.508 10 H 0.105 0.895 11 C -0.184 4.184 12 N -0.441 5.441 13 Si 0.808 3.192 14 H -0.177 1.177 15 H -0.192 1.192 16 H -0.190 1.190 17 C -0.258 4.258 18 C -0.062 4.062 19 C 0.034 3.966 20 H 0.124 0.876 21 C -0.169 4.169 22 C -0.688 4.688 23 S 2.595 3.405 24 O -0.963 6.963 25 O -0.975 6.975 26 C -0.740 4.740 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.188 0.812 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.697 -15.331 5.332 16.247 hybrid contribution 0.118 1.802 -0.316 1.833 sum -0.579 -13.529 5.016 14.441 Atomic orbital electron populations 1.22337 0.77838 1.04419 1.03633 1.47643 1.07877 1.04067 1.73620 1.18580 0.86193 0.84396 0.73740 1.90639 1.15838 1.88135 1.53108 1.19091 1.02075 0.95238 1.11660 1.20480 0.97228 0.93317 0.96844 1.20944 0.96982 0.97506 1.05738 1.18137 0.90004 0.92858 0.89374 1.20087 1.26191 1.04041 1.00505 0.89474 1.26915 0.93536 1.03907 0.94092 1.69783 1.33517 1.38885 1.01947 0.85068 0.78598 0.75726 0.79846 1.17672 1.19237 1.18980 1.21001 1.02383 0.94452 1.07996 1.20905 0.91954 0.97172 0.96206 1.21550 0.99412 0.83796 0.91851 0.87589 1.22611 1.04560 0.91006 0.98760 1.30426 1.13266 1.04793 1.20319 1.08382 0.74121 0.77367 0.80680 1.93583 1.40742 1.75094 1.86859 1.93567 1.54894 1.74304 1.74702 1.30994 1.13026 1.22670 1.07330 0.89825 0.91193 0.88433 0.89386 0.87948 0.89801 0.86697 0.84177 0.87158 0.87019 0.81161 0.82351 0.83002 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.24 7.62 127.77 0.97 2.21 16 2 N -0.60 -15.96 2.79 -822.38 -2.29 -18.25 16 3 C 0.58 21.84 7.31 86.73 0.63 22.47 16 4 O -0.59 -26.10 16.28 -3.99 -0.06 -26.17 16 5 C -0.28 -11.66 5.15 -19.93 -0.10 -11.77 16 6 C -0.06 -2.85 9.58 22.25 0.21 -2.64 16 7 C -0.19 -9.91 8.59 22.47 0.19 -9.71 16 8 C 0.10 4.99 5.55 -21.28 -0.12 4.87 16 9 C -0.48 -23.85 9.05 23.46 0.21 -23.63 16 10 H 0.09 4.09 7.87 -2.91 -0.02 4.07 16 11 C 0.03 1.51 5.25 85.35 0.45 1.95 16 12 N -0.82 -40.53 10.84 21.87 0.24 -40.29 16 13 Si 0.99 35.55 29.57 68.60 2.03 37.58 16 14 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 15 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 16 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 17 C -0.24 -10.33 9.73 22.47 0.22 -10.11 16 18 C -0.04 -1.67 7.55 22.25 0.17 -1.51 16 19 C 0.14 2.78 2.94 45.68 0.13 2.92 16 20 H 0.11 2.48 6.92 -2.39 -0.02 2.46 16 21 C -0.13 -1.56 5.91 31.56 0.19 -1.37 16 22 C -0.56 -4.63 7.31 72.66 0.53 -4.09 16 23 S 2.41 37.76 6.10 -56.49 -0.34 37.41 16 24 O -0.97 -20.96 18.15 -127.47 -2.31 -23.27 16 25 O -0.98 -23.22 18.15 -127.47 -2.31 -25.53 16 26 C -0.61 -10.27 6.77 72.37 0.49 -9.78 16 27 H 0.08 1.37 6.84 -2.38 -0.02 1.36 16 28 H 0.07 1.83 6.01 -2.39 -0.01 1.82 16 29 H 0.10 1.39 6.45 -2.39 -0.02 1.38 16 30 H 0.09 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.10 5.58 6.23 -2.91 -0.02 5.56 16 32 H 0.29 13.04 8.29 -92.71 -0.77 12.27 16 33 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.14 4.08 5.54 -2.91 -0.02 4.06 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 0.96 7.34 -2.39 -0.02 0.94 16 37 H 0.17 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.16 0.91 8.14 -2.39 -0.02 0.90 16 39 H 0.15 2.29 6.28 -2.39 -0.01 2.28 16 40 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -74.22 337.98 0.20 -74.03 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 1.08 Total: 24.69 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 4.18 Total: -40.20 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -2.05 Total: -58.54 kcal Atomic # 8 Polarization: -70.28 SS G_CDS: -4.69 Total: -74.97 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Atomic # 16 Polarization: 37.76 SS G_CDS: -0.34 Total: 37.41 kcal Total: -74.22 0.20 -74.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270254187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.577 kcal (2) G-P(sol) polarization free energy of solvation -74.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds