Wall clock time and date at job start Sat Apr 11 2020 00:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48496 * 109.47127 * 239.99950 * 3 2 1 5 5 H 1.48500 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47032 * 119.99809 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92910 * 89.99517 * 10 9 7 12 12 C 1.38102 * 120.07730 * 179.97438 * 11 10 9 13 13 C 1.38905 * 119.92398 * 0.28542 * 12 11 10 14 14 N 1.39669 * 120.07711 * 179.72013 * 13 12 11 15 15 C 1.46502 * 120.00681 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47429 * 179.97438 * 15 14 13 17 17 C 1.36130 * 119.77683 * 259.72634 * 16 15 14 18 18 C 1.38805 * 120.59337 * 179.75059 * 17 16 15 19 19 C 1.37503 * 120.18598 * 0.54794 * 18 17 16 20 20 C 1.39815 * 120.18026 * 359.70933 * 19 18 17 21 21 S 1.75902 * 130.56854 * 180.02562 * 20 19 18 22 22 C 1.75301 * 92.19632 * 179.97438 * 21 20 19 23 23 C 1.31824 * 111.40634 * 0.02562 * 22 21 20 24 24 C 1.39770 * 119.75304 * 0.02562 * 20 19 18 25 25 C 1.38913 * 119.85112 * 359.48742 * 13 12 11 26 26 C 1.38104 * 119.92366 * 0.48549 * 25 13 12 27 27 H 0.96990 * 119.99719 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47318 * 59.99950 * 9 7 2 29 29 H 1.09005 * 109.47405 * 299.99623 * 9 7 2 30 30 H 1.08008 * 119.95755 * 0.02755 * 11 10 9 31 31 H 1.08002 * 120.03497 * 180.02562 * 12 11 10 32 32 H 0.97008 * 120.00083 * 0.02562 * 14 13 12 33 33 H 1.08995 * 109.47221 * 300.00552 * 15 14 13 34 34 H 1.09006 * 109.46597 * 60.00077 * 15 14 13 35 35 H 1.08000 * 119.70384 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.90708 * 180.26339 * 18 17 16 37 37 H 1.08006 * 119.91393 * 179.72825 * 19 18 17 38 38 H 1.07994 * 124.29614 * 179.97438 * 22 21 20 39 39 H 1.08000 * 122.55272 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.03958 * 180.21259 * 25 13 12 41 41 H 1.08007 * 119.96398 * 179.74829 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6788 -4.1690 1.1990 12 6 3.5758 -5.2190 1.2025 13 6 4.0322 -5.7446 0.0005 14 7 4.9439 -6.8027 0.0004 15 6 5.4238 -7.3562 -1.2683 16 6 6.3909 -8.4785 -0.9930 17 6 7.7307 -8.2517 -1.0748 18 6 8.6368 -9.2718 -0.8196 19 6 8.1877 -10.5293 -0.4913 20 6 6.8159 -10.7859 -0.4067 21 16 5.9510 -12.2667 -0.0149 22 6 4.3928 -11.4837 -0.1938 23 6 4.5271 -10.2140 -0.5218 24 6 5.9014 -9.7591 -0.6578 25 6 3.5761 -5.2186 -1.2016 26 6 2.6787 -4.1689 -1.1980 27 1 -0.4849 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5568 0.8903 30 1 2.3264 -3.7573 2.1333 31 1 3.9253 -5.6283 2.1389 32 1 5.2588 -7.1717 0.8404 33 1 4.5785 -7.7369 -1.8415 34 1 5.9269 -6.5750 -1.8383 35 1 8.0920 -7.2681 -1.3364 36 1 9.6974 -9.0785 -0.8836 37 1 8.8965 -11.3209 -0.2979 38 1 3.4433 -11.9789 -0.0538 39 1 3.6809 -9.5613 -0.6770 40 1 3.9263 -5.6272 -2.1380 41 1 2.3268 -3.7568 -2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171376875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:44 Heat of formation + Delta-G solvation = 47.978555 kcal Electronic energy + Delta-G solvation = -22623.175623 eV Core-core repulsion = 19364.797575 eV Total energy + Delta-G solvation = -3258.378048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.92221 -40.10973 -36.99331 -36.15474 -35.09448 -33.20424 -31.64130 -31.35801 -30.33554 -28.26864 -26.53097 -24.76366 -24.58723 -23.61687 -22.41797 -21.57242 -21.37952 -18.84084 -18.46395 -18.00710 -17.15139 -16.86125 -16.60868 -16.38437 -15.88759 -15.70627 -15.05517 -14.97123 -14.81728 -14.59762 -14.45464 -14.30478 -14.14183 -13.78258 -13.42858 -13.32156 -13.17309 -12.99510 -12.67259 -12.52175 -12.41361 -12.25877 -12.03457 -11.66958 -11.62110 -11.56687 -11.35604 -10.63727 -10.56764 -10.53860 -9.66892 -9.52664 -8.70872 -8.29441 -7.95019 -6.29003 -0.29670 0.16089 0.55849 0.68791 0.90204 0.99364 1.31669 1.40278 1.43387 1.51621 2.42254 2.43032 2.94046 3.13726 3.17403 3.53115 3.71868 3.93821 4.09261 4.14179 4.25470 4.29467 4.36977 4.49998 4.52315 4.59062 4.74614 4.78941 4.79766 4.87014 4.96765 5.03729 5.05501 5.21222 5.31987 5.38035 5.40079 5.42454 5.55227 5.56868 5.71471 5.82259 5.85671 6.04184 6.25001 6.26029 6.57225 6.84273 6.91759 7.39153 8.92978 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.026754 B = 0.002179 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.314397 B =12845.963210 C =13494.394879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.063 3.937 10 C -0.122 4.122 11 C -0.089 4.089 12 C -0.190 4.190 13 C 0.201 3.799 14 N -0.737 5.737 15 C 0.171 3.829 16 C -0.072 4.072 17 C -0.102 4.102 18 C -0.102 4.102 19 C -0.085 4.085 20 C -0.161 4.161 21 S 0.084 5.916 22 C -0.189 4.189 23 C -0.129 4.129 24 C -0.076 4.076 25 C -0.192 4.192 26 C -0.089 4.089 27 H 0.264 0.736 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.187 0.813 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.093 -26.397 -1.730 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.124 4.124 11 C -0.108 4.108 12 C -0.212 4.212 13 C 0.099 3.901 14 N -0.369 5.369 15 C 0.047 3.953 16 C -0.074 4.074 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.107 4.107 20 C -0.276 4.276 21 S 0.347 5.653 22 C -0.323 4.323 23 C -0.159 4.159 24 C -0.085 4.085 25 C -0.214 4.214 26 C -0.108 4.108 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.236 0.764 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.205 0.795 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 18.327 -27.858 -1.553 33.382 hybrid contribution -0.700 2.377 -0.003 2.478 sum 17.627 -25.481 -1.557 31.023 Atomic orbital electron populations 1.70084 1.07681 1.27866 1.51665 1.25962 0.95790 1.03141 0.94796 0.85508 0.78300 0.78149 0.79150 1.19241 1.20575 1.19299 1.21421 0.93029 0.91476 1.50400 0.92897 1.17980 0.92823 0.91397 0.95173 1.20131 1.00670 0.97742 0.93886 1.20811 0.97055 0.95778 0.97134 1.20626 1.03014 1.00503 0.97093 1.17628 0.90366 0.88817 0.93265 1.44425 1.48461 1.36196 1.07818 1.20147 0.95631 0.92984 0.86551 1.19477 0.94685 0.92186 1.01095 1.20980 0.91848 1.00715 0.98666 1.21400 1.01282 0.91651 0.97913 1.20848 0.91898 0.98539 0.99463 1.22996 0.98441 0.97861 1.08323 1.84057 0.96649 1.10221 1.74338 1.25359 1.02354 0.98103 1.06461 1.21108 0.95864 0.96108 1.02834 1.19334 0.92423 0.93903 1.02797 1.20661 1.03069 1.00551 0.97122 1.20835 0.97033 0.95794 0.97094 0.92679 0.98440 0.98493 0.87280 0.84747 0.76359 0.91652 0.90833 0.83737 0.82263 0.83624 0.79539 0.83637 0.84619 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.53 -31.04 9.09 25.60 0.23 -30.80 16 8 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.06 3.54 5.10 29.10 0.15 3.69 16 10 C -0.12 -5.65 5.07 -19.84 -0.10 -5.75 16 11 C -0.09 -3.62 9.69 22.25 0.22 -3.40 16 12 C -0.19 -6.19 9.90 22.40 0.22 -5.97 16 13 C 0.20 5.97 6.65 38.21 0.25 6.22 16 14 N -0.74 -16.30 5.72 -343.15 -1.96 -18.27 16 15 C 0.17 3.18 4.76 85.63 0.41 3.59 16 16 C -0.07 -1.24 5.27 -19.65 -0.10 -1.35 16 17 C -0.10 -1.44 9.55 21.91 0.21 -1.23 16 18 C -0.10 -1.20 10.03 22.23 0.22 -0.98 16 19 C -0.09 -1.16 10.07 22.48 0.23 -0.93 16 20 C -0.16 -2.79 6.48 23.02 0.15 -2.64 16 21 S 0.08 1.27 23.23 -56.49 -1.31 -0.04 16 22 C -0.19 -2.89 11.02 67.04 0.74 -2.15 16 23 C -0.13 -2.31 9.86 23.33 0.23 -2.08 16 24 C -0.08 -1.42 5.98 -20.35 -0.12 -1.54 16 25 C -0.19 -6.18 9.31 22.40 0.21 -5.98 16 26 C -0.09 -3.59 9.69 22.25 0.22 -3.37 16 27 H 0.26 15.34 8.31 -92.72 -0.77 14.57 16 28 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 29 H 0.00 -0.19 8.09 -2.38 -0.02 -0.21 16 30 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.40 8.15 8.48 -92.70 -0.79 7.36 16 33 H 0.07 1.24 7.59 -2.39 -0.02 1.22 16 34 H 0.07 1.30 7.77 -2.38 -0.02 1.29 16 35 H 0.14 1.61 7.99 -2.91 -0.02 1.59 16 36 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 39 H 0.15 2.57 7.85 -2.91 -0.02 2.55 16 40 H 0.14 3.59 6.73 -2.91 -0.02 3.57 16 41 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -69.20 363.06 3.11 -66.09 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.26 Total: 16.50 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.82 Total: -54.17 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.68 Total: -75.71 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.31 Total: -0.04 kcal Total: -69.20 3.11 -66.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171376875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.065 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds