Wall clock time and date at job start Sat Apr 11 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99533 * 2 1 4 4 H 1.48499 * 109.47255 * 270.00002 * 3 2 1 5 5 H 1.48497 * 109.47535 * 30.00043 * 3 2 1 6 6 H 1.48504 * 109.47080 * 150.00508 * 3 2 1 7 7 C 1.37878 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99304 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00233 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00207 * 89.99627 * 10 9 7 12 12 C 1.50691 * 109.47137 * 270.00007 * 11 10 9 13 13 C 1.38242 * 119.98897 * 90.00132 * 12 11 10 14 14 C 1.38210 * 120.01504 * 180.02562 * 13 12 11 15 15 C 1.38355 * 119.98811 * 0.02562 * 14 13 12 16 16 Cl 1.73595 * 120.01456 * 179.72684 * 15 14 13 17 17 C 1.38359 * 119.97271 * 359.97438 * 15 14 13 18 18 C 1.38216 * 119.98363 * 359.97438 * 17 15 14 19 19 C 1.34773 * 119.99585 * 269.99541 * 10 9 7 20 20 O 1.21282 * 120.00103 * 180.02562 * 19 10 9 21 21 C 1.50699 * 120.00346 * 359.97438 * 19 10 9 22 22 H 1.09002 * 112.84666 * 50.33731 * 21 19 10 23 23 C 1.53783 * 113.61642 * 181.52789 * 21 19 10 24 24 C 1.53778 * 87.07978 * 139.98597 * 23 21 19 25 25 H 1.09006 * 113.61278 * 219.93965 * 24 23 21 26 26 O 1.42896 * 113.61643 * 89.11572 * 24 23 21 27 27 C 1.53777 * 113.61792 * 279.14077 * 21 19 10 28 28 H 0.96994 * 120.00508 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47632 * 59.99614 * 9 7 2 30 30 H 1.09009 * 109.46560 * 299.99960 * 9 7 2 31 31 H 1.09005 * 109.46872 * 149.99441 * 11 10 9 32 32 H 1.08998 * 109.46836 * 29.99969 * 11 10 9 33 33 H 1.08002 * 119.99021 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.00641 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.00345 * 179.97438 * 17 15 14 36 36 H 1.08000 * 119.99321 * 180.02562 * 18 17 15 37 37 H 1.09004 * 113.61452 * 254.53158 * 23 21 19 38 38 H 1.08997 * 113.61511 * 25.43561 * 23 21 19 39 39 H 0.96700 * 114.00283 * 179.97438 * 26 24 23 40 40 H 1.08999 * 113.61008 * 334.56178 * 27 21 19 41 41 H 1.08994 * 113.61925 * 105.46392 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6783 -4.1699 1.2674 12 6 3.9211 -3.4377 1.7036 13 6 3.8166 -2.3141 2.5022 14 6 4.9560 -1.6418 2.9021 15 6 6.2014 -2.0932 2.5027 16 17 7.6326 -1.2452 2.9988 17 6 6.3054 -3.2178 1.7034 18 6 5.1652 -3.8898 1.3050 19 6 2.6419 -4.1242 -1.1686 20 8 3.4297 -5.0463 -1.1685 21 6 2.1527 -3.5514 -2.4738 22 1 2.2417 -2.4660 -2.5194 23 6 2.7176 -4.2683 -3.7115 24 6 1.3184 -4.1285 -4.3338 25 1 0.9991 -5.0083 -4.8925 26 8 1.1341 -2.9123 -5.0610 27 6 0.7697 -4.0744 -2.8963 28 1 -0.4850 0.8399 0.0004 29 1 0.6248 -2.5564 -0.8919 30 1 0.6241 -2.5574 0.8881 31 1 2.9067 -5.2277 1.1367 32 1 1.9044 -4.0564 2.0265 33 1 2.8444 -1.9616 2.8136 34 1 4.8743 -0.7642 3.5263 35 1 7.2772 -3.5703 1.3910 36 1 5.2462 -4.7679 0.6815 37 1 3.4864 -3.6983 -4.2332 38 1 3.0102 -5.3011 -3.5222 39 1 0.2561 -2.8188 -5.4551 40 1 0.5288 -5.0541 -2.4838 41 1 -0.0318 -3.3483 -2.7609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182645369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:52 Heat of formation + Delta-G solvation = -49.112802 kcal Electronic energy + Delta-G solvation = -25590.130003 eV Core-core repulsion = 21882.356038 eV Total energy + Delta-G solvation = -3707.773965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05542 -38.99839 -37.69294 -36.27535 -35.04176 -34.28768 -32.70443 -31.05750 -30.67962 -27.48978 -26.61543 -25.41637 -24.48459 -22.94713 -22.38375 -21.23264 -19.70436 -18.47982 -17.09948 -16.86788 -16.58548 -16.06376 -15.60101 -15.12206 -14.99757 -14.93723 -14.53353 -13.89769 -13.78606 -13.20250 -13.14718 -12.99800 -12.86022 -12.30653 -12.22026 -11.92696 -11.82492 -11.48136 -11.38746 -11.32239 -11.13256 -11.02699 -10.89142 -10.74371 -10.66166 -10.48656 -10.12101 -10.00713 -9.74796 -9.63958 -8.97819 -8.62911 -8.57034 -8.22941 -7.77699 -6.18859 -4.24214 1.46556 1.70476 2.36674 3.23472 3.29673 3.31229 3.38243 3.78350 4.21191 4.28578 4.36117 4.79312 5.00333 5.08665 5.15020 5.16573 5.21794 5.23696 5.31144 5.50965 5.71894 5.77812 5.88026 5.97047 6.02315 6.03196 6.12409 6.14609 6.30436 6.35816 6.40431 6.56706 6.62205 6.66767 6.77168 6.99999 7.16064 7.19808 7.49516 7.76954 7.81110 8.05545 8.27814 8.80201 8.98337 9.43618 10.88002 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.005042 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.523795 B = 5552.465947 C = 7018.434869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.236 3.764 10 N -0.590 5.590 11 C 0.158 3.842 12 C -0.085 4.085 13 C -0.064 4.064 14 C -0.118 4.118 15 C -0.035 4.035 16 Cl -0.089 7.089 17 C -0.123 4.123 18 C -0.088 4.088 19 C 0.528 3.472 20 O -0.574 6.574 21 C -0.117 4.117 22 H 0.127 0.873 23 C -0.113 4.113 24 C 0.078 3.922 25 H 0.065 0.935 26 O -0.548 6.548 27 C -0.152 4.152 28 H 0.264 0.736 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.378 0.622 40 H 0.084 0.916 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -7.289 -0.060 8.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.116 3.884 10 N -0.319 5.319 11 C 0.034 3.966 12 C -0.087 4.087 13 C -0.083 4.083 14 C -0.137 4.137 15 C -0.062 4.062 16 Cl -0.061 7.061 17 C -0.142 4.142 18 C -0.107 4.107 19 C 0.317 3.683 20 O -0.456 6.456 21 C -0.137 4.137 22 H 0.145 0.855 23 C -0.150 4.150 24 C 0.019 3.981 25 H 0.083 0.917 26 O -0.353 6.353 27 C -0.190 4.190 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.224 0.776 40 H 0.103 0.897 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.379 -7.456 0.198 8.649 hybrid contribution -0.032 1.395 -0.043 1.396 sum 4.347 -6.061 0.155 7.460 Atomic orbital electron populations 1.69908 1.05920 1.27169 1.50059 1.24870 0.94728 0.99028 0.94845 0.86652 0.80102 0.83346 0.78474 1.20496 1.21169 1.19578 1.21464 0.93606 0.90209 1.51453 0.92009 1.19521 0.87360 0.82703 0.98766 1.48264 1.44801 1.35149 1.03669 1.20208 0.92880 0.96771 0.86711 1.20356 0.95376 0.96406 0.96513 1.21080 0.98281 0.93316 0.95587 1.20984 0.90660 1.00516 1.01538 1.20880 0.87332 0.96079 1.01885 1.98331 1.39537 1.77603 1.90597 1.20921 0.99372 0.95072 0.98828 1.21118 0.91240 1.00056 0.98284 1.20402 0.80267 0.81955 0.85672 1.90545 1.36272 1.30813 1.87964 1.22584 0.96844 1.02882 0.91437 0.85539 1.22947 0.95425 1.01991 0.94681 1.22732 0.97979 0.86543 0.90863 0.91696 1.86509 1.37597 1.39829 1.71364 1.23536 0.96998 1.01839 0.96610 0.92640 0.93823 0.94889 0.90105 0.90060 0.84594 0.85504 0.85693 0.84917 0.90719 0.88046 0.77552 0.89746 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -13.02 8.55 -34.44 -0.29 -13.32 16 8 H 0.06 1.61 7.57 -52.49 -0.40 1.21 16 9 C 0.24 5.23 4.92 -5.20 -0.03 5.20 16 10 N -0.59 -11.57 2.44 -176.44 -0.43 -12.00 16 11 C 0.16 2.71 5.57 -5.20 -0.03 2.69 16 12 C -0.09 -1.48 5.46 -104.62 -0.57 -2.05 16 13 C -0.06 -1.11 8.88 -39.59 -0.35 -1.46 16 14 C -0.12 -1.96 9.83 -39.55 -0.39 -2.35 16 15 C -0.04 -0.57 6.32 -39.49 -0.25 -0.82 16 16 Cl -0.09 -1.29 28.96 -51.86 -1.50 -2.79 16 17 C -0.12 -1.95 9.83 -39.54 -0.39 -2.34 16 18 C -0.09 -1.48 9.70 -39.59 -0.38 -1.87 16 19 C 0.53 10.42 7.20 -10.99 -0.08 10.34 16 20 O -0.57 -11.91 15.02 5.56 0.08 -11.82 16 21 C -0.12 -2.12 2.73 -90.96 -0.25 -2.37 16 22 H 0.13 2.65 7.67 -51.93 -0.40 2.26 16 23 C -0.11 -1.77 7.23 -25.92 -0.19 -1.96 16 24 C 0.08 1.07 5.28 -25.83 -0.14 0.93 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 O -0.55 -7.81 13.59 -35.23 -0.48 -8.29 16 27 C -0.15 -2.32 6.68 -25.83 -0.17 -2.49 16 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.04 1.00 5.66 -51.93 -0.29 0.71 16 30 H 0.03 0.76 7.89 -51.92 -0.41 0.35 16 31 H 0.08 1.33 7.36 -51.93 -0.38 0.95 16 32 H 0.08 1.27 7.84 -51.93 -0.41 0.87 16 33 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.13 2.23 7.58 -52.49 -0.40 1.83 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.55 7.45 -51.93 -0.39 1.17 16 39 H 0.38 3.58 9.12 45.56 0.42 4.00 16 40 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.08 1.35 7.60 -51.93 -0.39 0.95 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -28.57 360.42 -9.51 -38.08 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.72 Total: 9.04 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.60 Total: -10.20 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.31 Total: -35.00 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.40 Total: -20.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.57 -9.51 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182645369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.032 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds