Wall clock time and date at job start Sat Apr 11 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99533 * 2 1 4 4 H 1.48499 * 109.47255 * 270.00002 * 3 2 1 5 5 H 1.48497 * 109.47535 * 30.00043 * 3 2 1 6 6 H 1.48504 * 109.47080 * 150.00508 * 3 2 1 7 7 C 1.37878 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99304 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00233 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00207 * 89.99627 * 10 9 7 12 12 C 1.50691 * 109.47137 * 270.00007 * 11 10 9 13 13 C 1.38242 * 119.98897 * 90.00132 * 12 11 10 14 14 C 1.38210 * 120.01504 * 180.02562 * 13 12 11 15 15 C 1.38355 * 119.98811 * 0.02562 * 14 13 12 16 16 Cl 1.73595 * 120.01456 * 179.72684 * 15 14 13 17 17 C 1.38359 * 119.97271 * 359.97438 * 15 14 13 18 18 C 1.38216 * 119.98363 * 359.97438 * 17 15 14 19 19 C 1.34773 * 119.99585 * 269.99541 * 10 9 7 20 20 O 1.21282 * 120.00103 * 180.02562 * 19 10 9 21 21 C 1.50699 * 120.00346 * 359.97438 * 19 10 9 22 22 H 1.09002 * 112.84666 * 50.33731 * 21 19 10 23 23 C 1.53783 * 113.61642 * 181.52789 * 21 19 10 24 24 C 1.53778 * 87.07978 * 139.98597 * 23 21 19 25 25 H 1.09006 * 113.61278 * 219.93965 * 24 23 21 26 26 O 1.42896 * 113.61643 * 89.11572 * 24 23 21 27 27 C 1.53777 * 113.61792 * 279.14077 * 21 19 10 28 28 H 0.96994 * 120.00508 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47632 * 59.99614 * 9 7 2 30 30 H 1.09009 * 109.46560 * 299.99960 * 9 7 2 31 31 H 1.09005 * 109.46872 * 149.99441 * 11 10 9 32 32 H 1.08998 * 109.46836 * 29.99969 * 11 10 9 33 33 H 1.08002 * 119.99021 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.00641 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.00345 * 179.97438 * 17 15 14 36 36 H 1.08000 * 119.99321 * 180.02562 * 18 17 15 37 37 H 1.09004 * 113.61452 * 254.53158 * 23 21 19 38 38 H 1.08997 * 113.61511 * 25.43561 * 23 21 19 39 39 H 0.96700 * 114.00283 * 179.97438 * 26 24 23 40 40 H 1.08999 * 113.61008 * 334.56178 * 27 21 19 41 41 H 1.08994 * 113.61925 * 105.46392 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6783 -4.1699 1.2674 12 6 3.9211 -3.4377 1.7036 13 6 3.8166 -2.3141 2.5022 14 6 4.9560 -1.6418 2.9021 15 6 6.2014 -2.0932 2.5027 16 17 7.6326 -1.2452 2.9988 17 6 6.3054 -3.2178 1.7034 18 6 5.1652 -3.8898 1.3050 19 6 2.6419 -4.1242 -1.1686 20 8 3.4297 -5.0463 -1.1685 21 6 2.1527 -3.5514 -2.4738 22 1 2.2417 -2.4660 -2.5194 23 6 2.7176 -4.2683 -3.7115 24 6 1.3184 -4.1285 -4.3338 25 1 0.9991 -5.0083 -4.8925 26 8 1.1341 -2.9123 -5.0610 27 6 0.7697 -4.0744 -2.8963 28 1 -0.4850 0.8399 0.0004 29 1 0.6248 -2.5564 -0.8919 30 1 0.6241 -2.5574 0.8881 31 1 2.9067 -5.2277 1.1367 32 1 1.9044 -4.0564 2.0265 33 1 2.8444 -1.9616 2.8136 34 1 4.8743 -0.7642 3.5263 35 1 7.2772 -3.5703 1.3910 36 1 5.2462 -4.7679 0.6815 37 1 3.4864 -3.6983 -4.2332 38 1 3.0102 -5.3011 -3.5222 39 1 0.2561 -2.8188 -5.4551 40 1 0.5288 -5.0541 -2.4838 41 1 -0.0318 -3.3483 -2.7609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182645369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:52 Heat of formation + Delta-G solvation = -64.727219 kcal Electronic energy + Delta-G solvation = -25590.807095 eV Core-core repulsion = 21882.356038 eV Total energy + Delta-G solvation = -3708.451057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48316 -40.28539 -39.03123 -37.52346 -36.64871 -35.49085 -34.57436 -32.49049 -31.98504 -29.25389 -28.05350 -26.65821 -25.88627 -24.73128 -23.71952 -22.55515 -20.97439 -19.88560 -18.68755 -18.36418 -18.08409 -17.45942 -17.09078 -16.58410 -16.37815 -16.27266 -16.21593 -15.31648 -15.13035 -14.49967 -14.44102 -14.40181 -14.28640 -14.04274 -13.60356 -13.40385 -13.18173 -13.13753 -12.85781 -12.75712 -12.59636 -12.48893 -12.45881 -12.26703 -12.03392 -11.84571 -11.74156 -11.62662 -11.24185 -10.90854 -10.59939 -10.36022 -9.94208 -9.61209 -9.38091 -8.16719 -6.25767 0.14329 0.39038 1.11618 1.36679 1.41536 1.48610 1.77115 2.31018 2.43571 2.85397 3.15404 3.23252 3.57359 3.71237 3.80154 3.85744 3.94844 3.97553 3.99330 4.23845 4.41425 4.45152 4.64681 4.65610 4.69283 4.78666 4.81114 4.88797 4.96725 5.03946 5.05644 5.16639 5.25515 5.29469 5.30365 5.39966 5.65269 5.73499 5.86683 5.88539 6.13053 6.59924 6.88117 6.96634 7.35156 7.47074 8.88977 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.005042 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.523795 B = 5552.465947 C = 7018.434869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.046 0.954 9 C 0.252 3.748 10 N -0.591 5.591 11 C 0.155 3.845 12 C -0.096 4.096 13 C -0.075 4.075 14 C -0.125 4.125 15 C -0.041 4.041 16 Cl -0.073 7.073 17 C -0.121 4.121 18 C -0.094 4.094 19 C 0.525 3.475 20 O -0.585 6.585 21 C -0.131 4.131 22 H 0.093 0.907 23 C -0.110 4.110 24 C 0.095 3.905 25 H 0.104 0.896 26 O -0.570 6.570 27 C -0.144 4.144 28 H 0.265 0.735 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.398 0.602 40 H 0.097 0.903 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -7.791 -0.534 8.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.169 4.169 3 Si 0.759 3.241 4 H -0.209 1.209 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.064 0.936 9 C 0.132 3.868 10 N -0.320 5.320 11 C 0.032 3.968 12 C -0.097 4.097 13 C -0.094 4.094 14 C -0.143 4.143 15 C -0.067 4.067 16 Cl -0.044 7.044 17 C -0.140 4.140 18 C -0.113 4.113 19 C 0.314 3.686 20 O -0.467 6.467 21 C -0.152 4.152 22 H 0.111 0.889 23 C -0.148 4.148 24 C 0.036 3.964 25 H 0.122 0.878 26 O -0.378 6.378 27 C -0.182 4.182 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.249 0.751 40 H 0.116 0.884 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.906 -7.960 -0.276 9.354 hybrid contribution -0.126 1.552 0.132 1.563 sum 4.780 -6.408 -0.144 7.995 Atomic orbital electron populations 1.69968 1.06724 1.27665 1.51271 1.25375 0.95281 1.01229 0.95059 0.85938 0.79111 0.80961 0.78061 1.20852 1.20629 1.19754 1.21515 0.92817 0.91318 1.50295 0.93553 1.19161 0.87291 0.82641 0.97754 1.48215 1.44508 1.34514 1.04748 1.20361 0.93371 0.97040 0.86020 1.20400 0.95652 0.96692 0.96976 1.21095 0.98445 0.93695 0.96178 1.21166 0.90720 1.00837 1.01623 1.20988 0.87845 0.96230 1.01681 1.98335 1.38412 1.77227 1.90408 1.21155 1.00005 0.94669 0.98141 1.21171 0.91434 1.00262 0.98447 1.20701 0.79958 0.81813 0.86109 1.90527 1.36627 1.31369 1.88174 1.22597 0.99708 1.01100 0.91782 0.88883 1.22949 0.96652 1.01728 0.93475 1.22656 0.95815 0.87671 0.90287 0.87844 1.86457 1.39547 1.40376 1.71445 1.23532 0.94852 1.01861 0.97992 0.92606 0.94613 0.95846 0.89294 0.88859 0.85175 0.84355 0.83593 0.85007 0.91421 0.87382 0.75145 0.88445 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.29 21.45 0.28 -48.70 16 2 C 0.03 1.58 5.46 84.65 0.46 2.04 16 3 Si 0.93 42.21 29.54 68.60 2.03 44.23 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.52 -25.92 8.55 25.60 0.22 -25.70 16 8 H 0.05 2.44 7.57 -2.91 -0.02 2.41 16 9 C 0.25 11.31 4.92 85.63 0.42 11.74 16 10 N -0.59 -23.27 2.44 -830.52 -2.03 -25.30 16 11 C 0.15 5.29 5.57 85.63 0.48 5.77 16 12 C -0.10 -3.31 5.46 -19.86 -0.11 -3.42 16 13 C -0.08 -2.60 8.88 22.26 0.20 -2.41 16 14 C -0.12 -4.04 9.83 22.29 0.22 -3.82 16 15 C -0.04 -1.26 6.32 22.33 0.14 -1.12 16 16 Cl -0.07 -1.97 28.96 -2.72 -0.08 -2.05 16 17 C -0.12 -3.66 9.83 22.29 0.22 -3.45 16 18 C -0.09 -3.11 9.70 22.27 0.22 -2.89 16 19 C 0.52 20.63 7.20 87.66 0.63 21.26 16 20 O -0.58 -23.87 15.02 -3.04 -0.05 -23.92 16 21 C -0.13 -4.75 2.73 -11.01 -0.03 -4.78 16 22 H 0.09 4.02 7.67 -2.39 -0.02 4.00 16 23 C -0.11 -3.34 7.23 31.12 0.22 -3.12 16 24 C 0.09 2.39 5.28 31.18 0.16 2.55 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 O -0.57 -15.29 13.59 -148.98 -2.02 -17.32 16 27 C -0.14 -4.25 6.68 31.18 0.21 -4.04 16 28 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 29 H 0.04 1.67 5.66 -2.39 -0.01 1.66 16 30 H 0.02 1.10 7.89 -2.38 -0.02 1.08 16 31 H 0.09 2.88 7.36 -2.38 -0.02 2.87 16 32 H 0.09 2.91 7.84 -2.39 -0.02 2.89 16 33 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.13 4.34 7.58 -2.91 -0.02 4.31 16 37 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.11 3.13 7.45 -2.39 -0.02 3.11 16 39 H 0.40 6.73 9.12 -74.06 -0.68 6.05 16 40 H 0.10 2.61 8.09 -2.39 -0.02 2.59 16 41 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 Total: -1.00 -59.74 360.42 2.18 -57.56 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.38 Total: 26.86 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 3.66 Total: -11.37 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.74 Total: -74.00 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -2.07 Total: -41.24 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.05 kcal Total: -59.74 2.18 -57.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182645369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.165 kcal (2) G-P(sol) polarization free energy of solvation -59.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds