Wall clock time and date at job start Sat Apr 11 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86801 * 120.00256 * 2 1 4 4 H 1.48497 * 109.47054 * 85.01368 * 3 2 1 5 5 H 1.48502 * 109.46935 * 205.01227 * 3 2 1 6 6 H 1.48501 * 109.46998 * 325.01163 * 3 2 1 7 7 C 1.39942 * 119.99794 * 179.71715 * 2 1 3 8 8 H 1.08003 * 120.00186 * 198.24793 * 7 2 1 9 9 C 1.41434 * 119.99976 * 18.25432 * 7 2 1 10 10 C 1.40792 * 120.17640 * 23.98389 * 9 7 2 11 11 C 1.37708 * 120.03818 * 179.69507 * 10 9 7 12 12 C 1.38378 * 120.41333 * 0.60972 * 11 10 9 13 13 C 1.39879 * 120.35503 * 359.67157 * 12 11 10 14 14 C 1.47891 * 120.02419 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99561 * 332.17275 * 14 13 12 16 16 N 1.34771 * 119.99761 * 152.18251 * 14 13 12 17 17 C 1.47248 * 125.62206 * 3.59490 * 16 14 13 18 18 C 1.54600 * 105.40132 * 203.87716 * 17 16 14 19 19 H 1.09001 * 113.53244 * 201.22461 * 18 17 16 20 20 O 1.43964 * 108.50582 * 74.09155 * 18 17 16 21 21 C 1.43478 * 107.82316 * 214.70428 * 20 18 17 22 22 C 1.53938 * 107.40166 * 25.82824 * 21 20 18 23 23 F 1.39896 * 110.39432 * 115.60882 * 22 21 20 24 24 F 1.39895 * 110.39293 * 237.88550 * 22 21 20 25 25 C 1.54336 * 104.70081 * 356.80495 * 22 21 20 26 26 H 1.09002 * 113.29202 * 219.02442 * 25 22 21 27 27 C 1.46886 * 125.61208 * 183.29700 * 16 14 13 28 28 C 1.39036 * 119.95169 * 0.02562 * 13 12 11 29 29 H 0.97011 * 119.99847 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.98179 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.79658 * 180.31901 * 11 10 9 32 32 H 1.08000 * 119.82194 * 179.69263 * 12 11 10 33 33 H 1.08999 * 110.26069 * 322.86226 * 17 16 14 34 34 H 1.09000 * 110.25499 * 84.89509 * 17 16 14 35 35 H 1.09002 * 109.86648 * 145.28502 * 21 20 18 36 36 H 1.09000 * 109.86578 * 266.37457 * 21 20 18 37 37 H 1.09000 * 109.80664 * 297.26159 * 27 16 14 38 38 H 1.09003 * 109.80947 * 58.14798 * 27 16 14 39 39 H 1.07993 * 120.20073 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3844 2.1072 1.3948 5 1 3.5885 1.4119 -0.5920 6 1 1.4964 2.6199 -0.8028 7 6 2.0079 -1.2119 0.0060 8 1 3.0471 -1.2341 0.2990 9 6 1.3540 -2.4078 -0.3718 10 6 0.2223 -2.3619 -1.2080 11 6 -0.4084 -3.5284 -1.5792 12 6 0.0553 -4.7506 -1.1250 13 6 1.1748 -4.8155 -0.2888 14 6 1.6645 -6.1256 0.1918 15 8 0.8913 -7.0553 0.3150 16 7 2.9679 -6.2884 0.4934 17 6 3.9938 -5.2326 0.4621 18 6 5.3382 -5.9719 0.2721 19 1 6.2036 -5.3897 0.5886 20 8 5.4209 -6.4266 -1.0914 21 6 6.1147 -7.6825 -1.0941 22 6 5.9062 -8.3267 0.2884 23 9 5.1763 -9.5141 0.1678 24 9 7.1389 -8.5736 0.9020 25 6 5.1032 -7.2810 1.0906 26 1 5.4145 -7.2051 2.1325 27 6 3.5979 -7.5471 0.9133 28 6 1.8267 -3.6474 0.0902 29 1 -0.4850 0.8402 -0.0004 30 1 -0.1488 -1.4115 -1.5623 31 1 -1.2731 -3.4890 -2.2249 32 1 -0.4496 -5.6592 -1.4181 33 1 3.8137 -4.5560 -0.3733 34 1 3.9960 -4.6807 1.4020 35 1 5.7057 -8.3299 -1.8698 36 1 7.1779 -7.5179 -1.2694 37 1 3.1655 -7.8796 1.8570 38 1 3.4471 -8.3088 0.1484 39 1 2.6916 -3.6929 0.7353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188668030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:58 Heat of formation + Delta-G solvation = -135.555895 kcal Electronic energy + Delta-G solvation = -27592.077598 eV Core-core repulsion = 23328.758498 eV Total energy + Delta-G solvation = -4263.319099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.37629 -47.47870 -40.73136 -38.84590 -37.07388 -35.78963 -33.73756 -32.13822 -30.12991 -30.02275 -29.67501 -27.74373 -25.37530 -24.76816 -22.58185 -21.86651 -21.22138 -20.67720 -19.43880 -18.35286 -17.62617 -17.53555 -16.62748 -16.22753 -15.89365 -15.72011 -15.33350 -15.11286 -14.79595 -14.68863 -14.60108 -14.21752 -13.81119 -13.47145 -13.24067 -13.03470 -12.89772 -12.73904 -12.57324 -12.36838 -12.07767 -11.96652 -11.75344 -11.43544 -11.24518 -11.16207 -11.02651 -10.65774 -10.53614 -10.28296 -10.19023 -9.57504 -9.26162 -9.18657 -8.46289 -7.67068 -7.54811 -6.87299 -4.48321 2.19189 2.69389 2.95918 3.01451 3.03848 3.08954 3.11088 3.19427 3.42038 3.69918 3.75436 3.84699 4.05890 4.33873 4.36718 4.54312 4.71561 4.87137 5.09779 5.15305 5.22091 5.35355 5.42886 5.52655 5.68224 5.72276 5.81626 6.13870 6.35340 6.38224 6.46670 6.71708 6.87240 6.97900 7.12646 7.31541 7.58776 7.75012 7.84157 7.92077 8.05658 8.45445 8.67276 8.74392 8.78898 10.07990 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.003623 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.589870 B = 7727.508720 C = 8842.364118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.139 4.139 11 C -0.113 4.113 12 C -0.177 4.177 13 C -0.110 4.110 14 C 0.586 3.414 15 O -0.550 6.550 16 N -0.613 5.613 17 C 0.101 3.899 18 C 0.064 3.936 19 H 0.120 0.880 20 O -0.340 6.340 21 C 0.017 3.983 22 C 0.263 3.737 23 F -0.183 7.183 24 F -0.187 7.187 25 C -0.172 4.172 26 H 0.135 0.865 27 C 0.119 3.881 28 C -0.203 4.203 29 H 0.282 0.718 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.751 -8.434 0.706 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.098 0.902 9 C 0.099 3.901 10 C -0.158 4.158 11 C -0.132 4.132 12 C -0.197 4.197 13 C -0.113 4.113 14 C 0.379 3.621 15 O -0.428 6.428 16 N -0.348 5.348 17 C -0.022 4.022 18 C 0.007 3.993 19 H 0.137 0.863 20 O -0.259 6.259 21 C -0.061 4.061 22 C 0.226 3.774 23 F -0.163 7.163 24 F -0.168 7.168 25 C -0.192 4.192 26 H 0.153 0.847 27 C -0.004 4.004 28 C -0.223 4.223 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.948 -8.698 0.587 14.790 hybrid contribution 0.541 0.426 0.396 0.795 sum 12.489 -8.271 0.983 15.012 Atomic orbital electron populations 1.69805 1.07642 1.29424 1.34911 1.25897 0.94704 1.01389 0.92146 0.86316 0.80786 0.80690 0.79082 1.19574 1.18338 1.20013 1.19519 0.98301 0.91020 1.40461 0.90247 1.17526 0.91465 0.91803 0.89258 1.21572 0.98331 0.97058 0.98854 1.20678 0.99227 0.92832 1.00453 1.20402 0.98234 0.96908 1.04164 1.19176 0.98835 0.90550 1.02773 1.18641 0.79006 0.89001 0.75427 1.90691 1.54431 1.43489 1.54207 1.48127 1.08070 1.09508 1.69119 1.22759 0.83955 0.91175 1.04304 1.24453 0.99707 0.93929 0.81259 0.86263 1.88950 1.77474 1.34262 1.25180 1.24097 1.00146 0.87347 0.94546 1.22245 0.77426 0.82783 0.94901 1.93036 1.76960 1.49685 1.96668 1.93046 1.44035 1.95099 1.84631 1.24533 0.97041 0.95157 1.02419 0.84712 1.21600 0.88371 0.88626 1.01832 1.21501 1.03204 0.91954 1.05673 0.90704 0.85962 0.88577 0.88327 0.86807 0.89100 0.86766 0.88935 0.90454 0.90039 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.43 10.94 55.55 0.61 -18.82 16 2 C 0.08 1.80 5.13 -17.35 -0.09 1.71 16 3 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.28 9.05 -37.73 -0.34 -11.62 16 8 H 0.08 1.81 7.91 -52.48 -0.42 1.39 16 9 C 0.10 2.51 5.58 -106.87 -0.60 1.92 16 10 C -0.14 -3.41 8.70 -38.81 -0.34 -3.75 16 11 C -0.11 -2.60 10.01 -39.72 -0.40 -2.99 16 12 C -0.18 -4.07 9.60 -38.92 -0.37 -4.45 16 13 C -0.11 -2.49 5.68 -105.04 -0.60 -3.09 16 14 C 0.59 12.37 7.63 -12.31 -0.09 12.28 16 15 O -0.55 -12.99 16.98 5.32 0.09 -12.90 16 16 N -0.61 -10.25 3.31 -172.33 -0.57 -10.82 16 17 C 0.10 1.39 4.64 -2.79 -0.01 1.38 16 18 C 0.06 0.69 4.64 -24.19 -0.11 0.57 16 19 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 20 O -0.34 -4.21 10.91 -35.23 -0.38 -4.59 16 21 C 0.02 0.16 7.42 37.65 0.28 0.44 16 22 C 0.26 2.68 2.40 -25.54 -0.06 2.62 16 23 F -0.18 -2.14 15.26 2.25 0.03 -2.11 16 24 F -0.19 -1.89 17.10 2.25 0.04 -1.85 16 25 C -0.17 -1.76 3.93 -87.76 -0.34 -2.10 16 26 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 27 C 0.12 1.64 6.00 -3.37 -0.02 1.62 16 28 C -0.20 -4.55 7.67 -38.44 -0.29 -4.85 16 29 H 0.28 6.29 8.30 -40.81 -0.34 5.96 16 30 H 0.12 3.09 6.12 -52.48 -0.32 2.77 16 31 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.10 2.20 7.88 -52.49 -0.41 1.78 16 33 H 0.11 1.80 6.20 -51.93 -0.32 1.48 16 34 H 0.09 1.11 7.25 -51.93 -0.38 0.74 16 35 H 0.11 1.01 8.03 -51.93 -0.42 0.60 16 36 H 0.09 0.69 8.02 -51.93 -0.42 0.27 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16 39 H 0.11 2.14 4.60 -52.49 -0.24 1.90 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -29.39 326.82 -7.77 -37.16 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.09 Total: 6.92 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.39 Total: -10.31 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.04 Total: -29.64 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.29 Total: -17.50 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.07 Total: -3.96 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.39 -7.77 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188668030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.395 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds