Wall clock time and date at job start Sat Apr 11 2020 00:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48500 * 109.47611 * 240.00498 * 3 2 1 5 5 H 1.48505 * 109.46783 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46923 * 120.00210 * 3 2 1 7 7 C 1.38615 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99906 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.35785 * 116.99944 * 174.61468 * 9 7 2 11 11 C 1.38919 * 119.99065 * 186.53801 * 10 9 7 12 12 C 1.37994 * 120.00629 * 179.72300 * 11 10 9 13 13 C 1.38979 * 119.98918 * 0.55027 * 12 11 10 14 14 N 1.39785 * 120.00531 * 179.74253 * 13 12 11 15 15 C 1.39712 * 120.00007 * 25.72623 * 14 13 12 16 16 C 1.39054 * 120.00271 * 31.15098 * 15 14 13 17 17 C 1.38191 * 120.20946 * 179.97438 * 16 15 14 18 18 C 1.38039 * 120.22852 * 359.97438 * 17 16 15 19 19 C 1.39582 * 120.01094 * 0.04526 * 18 17 16 20 20 C 1.47855 * 120.10778 * 179.97438 * 19 18 17 21 21 N 1.31231 * 126.37632 * 179.68955 * 20 19 18 22 22 N 1.28668 * 109.24770 * 179.82751 * 21 20 19 23 23 C 1.30394 * 109.52154 * 0.44185 * 22 21 20 24 24 O 1.34404 * 107.62853 * 359.73478 * 23 22 21 25 25 C 1.38661 * 120.00628 * 210.87025 * 15 14 13 26 26 C 1.38973 * 119.98492 * 359.72793 * 13 12 11 27 27 C 1.37992 * 119.99476 * 359.97438 * 26 13 12 28 28 H 0.96995 * 120.00205 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99574 * 359.97438 * 11 10 9 30 30 H 1.07990 * 120.00745 * 180.27864 * 12 11 10 31 31 H 0.97001 * 120.00348 * 205.72328 * 14 13 12 32 32 H 1.07997 * 119.89613 * 359.97438 * 16 15 14 33 33 H 1.08006 * 119.88761 * 180.02562 * 17 16 15 34 34 H 1.07999 * 119.99540 * 180.02562 * 18 17 16 35 35 H 1.07996 * 126.18151 * 179.74839 * 23 22 21 36 36 H 1.08001 * 120.11280 * 0.02562 * 25 15 14 37 37 H 1.07999 * 119.99984 * 180.02562 * 26 13 12 38 38 H 1.07995 * 119.99518 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6966 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0090 -1.2004 -0.0005 8 1 3.0890 -1.2003 -0.0010 9 8 1.3351 -2.3679 -0.0005 10 6 2.0700 -3.5040 -0.1146 11 6 1.4343 -4.7308 -0.2582 12 6 2.1809 -5.8849 -0.3799 13 6 3.5689 -5.8210 -0.3473 14 7 4.3254 -6.9905 -0.4652 15 6 3.7967 -8.1006 -1.1285 16 6 2.9018 -7.9226 -2.1778 17 6 2.3767 -9.0176 -2.8372 18 6 2.7373 -10.2953 -2.4590 19 6 3.6345 -10.4849 -1.4067 20 6 4.0218 -11.8525 -0.9994 21 7 4.8546 -12.1714 -0.0367 22 7 4.9483 -13.4526 0.0359 23 6 4.1924 -13.9972 -0.8763 24 8 3.5896 -13.0038 -1.5517 25 6 4.1687 -9.3800 -0.7443 26 6 4.2044 -4.5941 -0.1979 27 6 3.4572 -3.4397 -0.0824 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -4.7808 -0.2786 30 1 1.6868 -6.8381 -0.4960 31 1 5.2176 -7.0313 -0.0865 32 1 2.6163 -6.9254 -2.4784 33 1 1.6823 -8.8733 -3.6518 34 1 2.3249 -11.1484 -2.9771 35 1 4.0722 -15.0553 -1.0564 36 1 4.8668 -9.5204 0.0677 37 1 5.2829 -4.5441 -0.1730 38 1 3.9510 -2.4863 0.0333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212608870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:41 Heat of formation + Delta-G solvation = 56.015388 kcal Electronic energy + Delta-G solvation = -24630.409685 eV Core-core repulsion = 20826.086926 eV Total energy + Delta-G solvation = -3804.322759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.18581 -41.24021 -40.28097 -38.54044 -37.24679 -35.97626 -34.16140 -33.64499 -31.96096 -31.33056 -30.45132 -28.71060 -27.12402 -25.63177 -24.95217 -23.89245 -23.22546 -22.79981 -21.97893 -19.90158 -19.25631 -18.73707 -18.32814 -18.15816 -17.81935 -17.09290 -16.57535 -16.30053 -16.14331 -15.86449 -15.45340 -15.42334 -15.30585 -14.63302 -14.46250 -14.28678 -14.02613 -13.57344 -13.51488 -13.35691 -13.18251 -12.99336 -12.70676 -12.63244 -12.55686 -12.34408 -12.13185 -12.01141 -11.74801 -11.24512 -11.06421 -10.65934 -9.84948 -9.75029 -9.44475 -8.42045 -8.04022 -6.07256 -0.56847 0.26697 0.52660 0.67536 0.90200 1.25148 1.37822 1.44031 1.48526 1.53449 2.20969 2.37767 2.71567 2.88313 2.89700 3.19873 3.58633 3.58991 3.86181 3.98159 4.06859 4.07665 4.11987 4.19714 4.35473 4.39313 4.51081 4.51440 4.66707 4.72500 4.88037 4.92665 5.09363 5.15620 5.25436 5.33628 5.40663 5.46255 5.49204 5.68020 5.73916 5.95961 6.06842 6.49460 6.78761 7.03162 7.19727 7.85738 8.81230 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.002062 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.746466 B =13573.525626 C =13904.977734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.409 4.409 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.089 3.911 11 C -0.166 4.166 12 C -0.109 4.109 13 C 0.108 3.892 14 N -0.675 5.675 15 C 0.185 3.815 16 C -0.149 4.149 17 C -0.080 4.080 18 C -0.115 4.115 19 C -0.009 4.009 20 C 0.214 3.786 21 N -0.311 5.311 22 N -0.337 5.337 23 C 0.171 3.829 24 O -0.223 6.223 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.207 4.207 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.417 0.583 32 H 0.128 0.872 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.319 0.681 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.473 -24.710 -6.674 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.038 3.962 11 C -0.186 4.186 12 C -0.130 4.130 13 C 0.012 3.988 14 N -0.300 5.300 15 C 0.085 3.915 16 C -0.171 4.171 17 C -0.098 4.098 18 C -0.136 4.136 19 C -0.012 4.012 20 C 0.005 3.995 21 N -0.158 5.158 22 N -0.181 5.181 23 C -0.058 4.058 24 O -0.101 6.101 25 C -0.148 4.148 26 C -0.130 4.130 27 C -0.226 4.226 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.255 0.745 32 H 0.146 0.854 33 H 0.177 0.823 34 H 0.169 0.831 35 H 0.333 0.667 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.845 -24.418 -5.655 26.579 hybrid contribution -0.301 0.726 -0.479 0.920 sum 8.544 -23.692 -6.134 25.921 Atomic orbital electron populations 1.70190 1.07944 1.28658 1.49299 1.26538 0.96834 1.02678 0.96204 0.84679 0.77368 0.74521 0.79863 1.18188 1.19918 1.18260 1.21739 0.92469 0.81516 1.52786 0.88064 1.83946 1.35742 1.12430 1.81998 1.19843 0.91537 0.88049 0.96736 1.20236 0.99904 0.90015 1.08431 1.20626 0.92128 0.97317 1.02897 1.17347 0.90384 0.85979 1.05077 1.41771 1.18516 1.09148 1.60610 1.17561 0.95840 0.86294 0.91766 1.21451 0.99992 1.00730 0.94899 1.21166 0.98697 0.90507 0.99419 1.21299 0.97226 0.98879 0.96194 1.16997 1.01089 0.83807 0.99310 1.25705 0.93890 0.88420 0.91508 1.74714 1.17188 1.06421 1.17500 1.74326 1.21680 1.00208 1.21881 1.30943 0.89521 0.97857 0.87490 1.84905 1.57352 1.15389 1.52480 1.20689 1.03571 0.89404 1.01159 1.20671 1.00112 0.89634 1.02545 1.21084 0.92905 0.99591 1.09065 0.92020 0.86430 0.84255 0.74491 0.85425 0.82263 0.83111 0.66685 0.84577 0.83665 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.67 21.61 0.30 -55.98 16 2 C -0.03 -1.43 5.49 84.82 0.47 -0.97 16 3 Si 1.02 42.41 29.55 68.60 2.03 44.44 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.41 -23.36 9.48 67.91 0.64 -22.72 16 8 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 9 O -0.23 -13.80 9.75 -22.93 -0.22 -14.02 16 10 C 0.09 4.25 6.65 22.59 0.15 4.40 16 11 C -0.17 -6.79 9.98 22.38 0.22 -6.57 16 12 C -0.11 -3.55 7.83 22.39 0.18 -3.37 16 13 C 0.11 3.23 6.05 38.23 0.23 3.47 16 14 N -0.68 -15.67 5.47 -180.49 -0.99 -16.66 16 15 C 0.18 4.07 5.93 38.18 0.23 4.30 16 16 C -0.15 -3.11 7.73 22.45 0.17 -2.94 16 17 C -0.08 -1.27 10.02 22.21 0.22 -1.05 16 18 C -0.12 -1.81 9.72 22.55 0.22 -1.59 16 19 C -0.01 -0.19 5.87 -20.11 -0.12 -0.31 16 20 C 0.21 4.44 7.99 87.33 0.70 5.14 16 21 N -0.31 -7.70 11.92 -166.30 -1.98 -9.68 16 22 N -0.34 -7.08 12.22 -175.22 -2.14 -9.22 16 23 C 0.17 1.92 13.36 130.46 1.74 3.66 16 24 O -0.22 -3.42 10.67 -8.48 -0.09 -3.51 16 25 C -0.13 -2.63 9.60 22.67 0.22 -2.41 16 26 C -0.11 -3.50 9.94 22.39 0.22 -3.27 16 27 C -0.21 -8.54 9.16 22.37 0.20 -8.33 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.14 3.92 6.31 -2.92 -0.02 3.90 16 31 H 0.42 7.85 8.89 -92.71 -0.82 7.03 16 32 H 0.13 2.98 6.52 -2.91 -0.02 2.96 16 33 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.15 1.68 7.93 -2.91 -0.02 1.65 16 35 H 0.32 -0.90 8.06 -2.91 -0.02 -0.92 16 36 H 0.14 2.87 7.86 -2.91 -0.02 2.84 16 37 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 Total: -1.00 -76.89 338.28 2.92 -73.98 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.32 Total: 23.23 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 5.70 Total: -32.57 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -4.81 Total: -91.54 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.31 Total: -17.54 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -76.89 2.92 -73.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.992 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds