Wall clock time and date at job start Sat Apr 11 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48495 * 109.47242 * 0.02562 * 3 2 1 5 5 H 1.48511 * 109.46824 * 120.00524 * 3 2 1 6 6 H 1.48499 * 109.47029 * 240.00021 * 3 2 1 7 7 C 1.37878 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99762 * 16.99820 * 7 2 1 9 9 C 1.50699 * 120.00183 * 196.99035 * 7 2 1 10 10 H 1.09000 * 109.47481 * 305.56175 * 9 7 2 11 11 C 1.53008 * 109.46765 * 65.56004 * 9 7 2 12 12 Cl 1.80300 * 109.46865 * 186.14780 * 11 9 7 13 13 O 1.42902 * 109.47263 * 185.55518 * 9 7 2 14 14 C 1.42894 * 113.99808 * 150.00120 * 13 9 7 15 15 C 1.50698 * 109.47239 * 180.02562 * 14 13 9 16 16 C 1.38360 * 119.85163 * 269.72951 * 15 14 13 17 17 C 1.37965 * 120.14163 * 179.72061 * 16 15 14 18 18 C 1.39574 * 119.85110 * 0.54708 * 17 16 15 19 19 C 1.47852 * 120.13914 * 179.70284 * 18 17 16 20 20 O 1.21554 * 119.99389 * 180.02562 * 19 18 17 21 21 N 1.34771 * 120.00193 * 0.02562 * 19 18 17 22 22 C 1.46504 * 119.99806 * 179.97438 * 21 19 18 23 23 C 1.52997 * 117.49665 * 223.62506 * 22 21 19 24 24 C 1.53001 * 60.00196 * 252.51222 * 23 22 21 25 25 C 1.39572 * 119.71575 * 359.72820 * 18 17 16 26 26 C 1.37963 * 119.84831 * 359.97438 * 25 18 17 27 27 H 0.96995 * 120.00080 * 174.95420 * 1 2 3 28 28 H 1.08998 * 109.46796 * 306.14662 * 11 9 7 29 29 H 1.09002 * 109.47099 * 66.14606 * 11 9 7 30 30 H 1.09003 * 109.47417 * 300.00466 * 14 13 9 31 31 H 1.08998 * 109.47271 * 60.00190 * 14 13 9 32 32 H 1.07998 * 119.93209 * 0.02562 * 16 15 14 33 33 H 1.07996 * 120.06971 * 180.25377 * 17 16 15 34 34 H 0.97000 * 119.99876 * 0.02562 * 21 19 18 35 35 H 1.08997 * 115.54989 * 9.33136 * 22 21 19 36 36 H 1.09003 * 117.50007 * 0.02562 * 23 22 21 37 37 H 1.09005 * 117.49974 * 145.02459 * 23 22 21 38 38 H 1.08992 * 117.49844 * 252.51656 * 24 23 22 39 39 H 1.08992 * 117.51739 * 107.47907 * 24 23 22 40 40 H 1.07996 * 120.07599 * 179.97438 * 25 18 17 41 41 H 1.08004 * 119.92234 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5000 -2.1088 -0.2744 9 6 3.4622 -1.2227 0.3808 10 1 4.0140 -0.5160 -0.2391 11 6 3.6119 -0.8346 1.8532 12 17 5.3621 -0.6928 2.2625 13 8 3.9813 -2.5389 0.1801 14 6 5.3703 -2.5711 -0.1539 15 6 5.8086 -4.0006 -0.3425 16 6 6.2928 -4.7204 0.7353 17 6 6.6903 -6.0312 0.5707 18 6 6.6139 -6.6273 -0.6891 19 6 7.0443 -8.0297 -0.8741 20 8 6.9771 -8.5460 -1.9725 21 7 7.5112 -8.7353 0.1749 22 6 7.9372 -10.1250 -0.0085 23 6 7.5015 -11.1426 1.0478 24 6 8.9605 -10.6866 0.9808 25 6 6.1299 -5.8938 -1.7734 26 6 5.7299 -4.5857 -1.5937 27 1 -0.4850 -0.8367 -0.0739 28 1 3.1191 0.1217 2.0287 29 1 3.1531 -1.6000 2.4792 30 1 5.5350 -2.0161 -1.0775 31 1 5.9482 -2.1168 0.6509 32 1 6.3551 -4.2567 1.7087 33 1 7.0642 -6.5933 1.4136 34 1 7.5645 -8.3233 1.0514 35 1 7.9966 -10.4660 -1.0420 36 1 6.8976 -10.7782 1.8788 37 1 7.2742 -12.1534 0.7092 38 1 9.6928 -11.3973 0.5980 39 1 9.3170 -10.0219 1.7676 40 1 6.0686 -6.3491 -2.7507 41 1 5.3555 -4.0169 -2.4321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223822454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:54 Heat of formation + Delta-G solvation = -44.933892 kcal Electronic energy + Delta-G solvation = -23804.210011 eV Core-core repulsion = 20096.617257 eV Total energy + Delta-G solvation = -3707.592754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41490 -38.88006 -37.47514 -37.07162 -35.13945 -33.58762 -33.20122 -31.72593 -30.91485 -29.77414 -26.41836 -24.79630 -23.23508 -22.81622 -22.67735 -21.61045 -20.83339 -20.52847 -18.19123 -17.83319 -16.98867 -16.11365 -15.65137 -15.51827 -15.14169 -15.04833 -14.84023 -14.30034 -14.16702 -13.69375 -13.56810 -13.44137 -13.11384 -12.97601 -12.59218 -12.37363 -12.26418 -12.01932 -11.79325 -11.71802 -11.22360 -11.07076 -10.92826 -10.91291 -10.69972 -10.28457 -10.11567 -10.02991 -9.61434 -9.34463 -9.16496 -8.99886 -8.81022 -8.54070 -8.41419 -6.78260 -4.40971 0.74745 1.37462 2.65245 2.74371 2.96512 3.17800 3.26010 3.40229 3.48547 3.79959 4.20880 4.34197 4.43082 4.54328 4.56638 4.62860 4.72555 4.90987 4.94419 5.19642 5.25738 5.31994 5.37808 5.41296 5.53234 5.64101 5.69477 5.78274 5.88821 5.94636 6.01623 6.06738 6.13487 6.16180 6.23237 6.33383 6.66559 6.77048 6.86295 7.18114 7.50405 7.95456 7.98541 8.17407 8.73811 9.28620 10.62858 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.002496 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.990301 B =11216.262031 C =11724.624562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.035 3.965 3 Si 1.033 2.967 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.601 4.601 8 H 0.072 0.928 9 C 0.195 3.805 10 H 0.024 0.976 11 C -0.047 4.047 12 Cl -0.240 7.240 13 O -0.365 6.365 14 C 0.076 3.924 15 C -0.041 4.041 16 C -0.107 4.107 17 C -0.090 4.090 18 C -0.145 4.145 19 C 0.568 3.432 20 O -0.537 6.537 21 N -0.702 5.702 22 C 0.080 3.920 23 C -0.194 4.194 24 C -0.190 4.190 25 C -0.060 4.060 26 C -0.108 4.108 27 H 0.274 0.726 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.135 0.865 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.763 -13.717 3.427 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.172 4.172 3 Si 0.860 3.140 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.638 4.638 8 H 0.090 0.910 9 C 0.137 3.863 10 H 0.042 0.958 11 C -0.110 4.110 12 Cl -0.214 7.214 13 O -0.284 6.284 14 C -0.001 4.001 15 C -0.042 4.042 16 C -0.125 4.125 17 C -0.109 4.109 18 C -0.148 4.148 19 C 0.357 3.643 20 O -0.415 6.415 21 N -0.353 5.353 22 C -0.026 4.026 23 C -0.233 4.233 24 C -0.228 4.228 25 C -0.079 4.079 26 C -0.126 4.126 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.238 0.762 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.484 -12.589 2.738 20.921 hybrid contribution 0.323 -1.300 0.599 1.467 sum 16.807 -13.888 3.337 22.057 Atomic orbital electron populations 1.70844 1.06606 1.31444 1.42859 1.25793 0.96226 1.02158 0.93058 0.84189 0.75802 0.76066 0.77925 1.20144 1.19688 1.20141 1.21929 0.93014 0.97195 1.51683 0.90953 1.20313 0.96051 0.81349 0.88597 0.95813 1.26551 0.77237 1.04723 1.02447 1.98621 1.28990 1.98627 1.95181 1.88003 1.20453 1.29767 1.90215 1.21746 0.86279 0.91482 1.00613 1.20116 0.94815 0.96032 0.93200 1.21039 0.98723 0.93751 0.99024 1.21168 0.98840 0.95272 0.95581 1.19760 1.06377 0.93467 0.95227 1.18344 0.76242 0.85829 0.83854 1.90753 1.54504 1.71314 1.24886 1.45302 1.65663 1.12131 1.12159 1.21605 1.01861 0.81420 0.97684 1.23443 0.97428 1.00190 1.02190 1.23386 0.93002 1.03926 1.02507 1.21219 0.94701 0.93446 0.98503 1.21167 0.99067 0.94733 0.97642 0.91520 0.88405 0.89103 0.93116 0.90817 0.85122 0.86012 0.76216 0.84353 0.88374 0.87886 0.87792 0.88410 0.84683 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.70 55.43 0.76 -24.70 16 2 C 0.04 0.95 5.30 -17.82 -0.09 0.85 16 3 Si 1.03 23.01 26.28 -169.99 -4.47 18.54 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.27 -5.49 5.72 56.52 0.32 -5.16 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.60 -16.09 9.15 -34.44 -0.32 -16.40 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.72 16 9 C 0.19 4.44 1.95 -27.88 -0.05 4.38 16 10 H 0.02 0.54 6.45 -51.93 -0.34 0.21 16 11 C -0.05 -0.97 6.00 37.16 0.22 -0.74 16 12 Cl -0.24 -4.25 26.15 -51.86 -1.36 -5.60 16 13 O -0.37 -7.92 9.94 -35.23 -0.35 -8.27 16 14 C 0.08 1.31 5.67 36.00 0.20 1.52 16 15 C -0.04 -0.63 5.52 -104.54 -0.58 -1.21 16 16 C -0.11 -1.42 9.68 -39.64 -0.38 -1.81 16 17 C -0.09 -1.02 9.54 -39.18 -0.37 -1.40 16 18 C -0.15 -1.87 5.87 -104.97 -0.62 -2.49 16 19 C 0.57 7.32 7.77 -12.33 -0.10 7.23 16 20 O -0.54 -8.60 15.91 5.32 0.08 -8.51 16 21 N -0.70 -6.64 5.52 -54.75 -0.30 -6.94 16 22 C 0.08 0.68 6.43 -67.93 -0.44 0.24 16 23 C -0.19 -1.26 10.46 -26.73 -0.28 -1.54 16 24 C -0.19 -1.12 10.46 -26.73 -0.28 -1.40 16 25 C -0.06 -0.82 9.60 -39.18 -0.38 -1.20 16 26 C -0.11 -1.56 9.68 -39.64 -0.38 -1.94 16 27 H 0.27 7.88 8.73 -40.82 -0.36 7.53 16 28 H 0.10 2.05 4.82 -51.93 -0.25 1.80 16 29 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.07 1.22 5.08 -51.93 -0.26 0.96 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.12 0.95 6.41 -52.49 -0.34 0.62 16 34 H 0.40 2.82 6.86 -40.82 -0.28 2.54 16 35 H 0.14 1.34 7.40 -51.93 -0.38 0.95 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 41 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -30.45 356.81 -9.37 -39.82 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.28 Total: 6.19 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.84 Total: -15.90 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.46 Total: -31.64 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.27 Total: -16.79 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.47 Total: 18.54 kcal Atomic # 17 Polarization: -4.25 SS G_CDS: -1.36 Total: -5.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.45 -9.37 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223822454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.114 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds