Wall clock time and date at job start Sat Apr 11 2020 00:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48495 * 109.47242 * 0.02562 * 3 2 1 5 5 H 1.48511 * 109.46824 * 120.00524 * 3 2 1 6 6 H 1.48499 * 109.47029 * 240.00021 * 3 2 1 7 7 C 1.37878 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99762 * 16.99820 * 7 2 1 9 9 C 1.50699 * 120.00183 * 196.99035 * 7 2 1 10 10 H 1.09000 * 109.47481 * 305.56175 * 9 7 2 11 11 C 1.53008 * 109.46765 * 65.56004 * 9 7 2 12 12 Cl 1.80300 * 109.46865 * 186.14780 * 11 9 7 13 13 O 1.42902 * 109.47263 * 185.55518 * 9 7 2 14 14 C 1.42894 * 113.99808 * 150.00120 * 13 9 7 15 15 C 1.50698 * 109.47239 * 180.02562 * 14 13 9 16 16 C 1.38360 * 119.85163 * 269.72951 * 15 14 13 17 17 C 1.37965 * 120.14163 * 179.72061 * 16 15 14 18 18 C 1.39574 * 119.85110 * 0.54708 * 17 16 15 19 19 C 1.47852 * 120.13914 * 179.70284 * 18 17 16 20 20 O 1.21554 * 119.99389 * 180.02562 * 19 18 17 21 21 N 1.34771 * 120.00193 * 0.02562 * 19 18 17 22 22 C 1.46504 * 119.99806 * 179.97438 * 21 19 18 23 23 C 1.52997 * 117.49665 * 223.62506 * 22 21 19 24 24 C 1.53001 * 60.00196 * 252.51222 * 23 22 21 25 25 C 1.39572 * 119.71575 * 359.72820 * 18 17 16 26 26 C 1.37963 * 119.84831 * 359.97438 * 25 18 17 27 27 H 0.96995 * 120.00080 * 174.95420 * 1 2 3 28 28 H 1.08998 * 109.46796 * 306.14662 * 11 9 7 29 29 H 1.09002 * 109.47099 * 66.14606 * 11 9 7 30 30 H 1.09003 * 109.47417 * 300.00466 * 14 13 9 31 31 H 1.08998 * 109.47271 * 60.00190 * 14 13 9 32 32 H 1.07998 * 119.93209 * 0.02562 * 16 15 14 33 33 H 1.07996 * 120.06971 * 180.25377 * 17 16 15 34 34 H 0.97000 * 119.99876 * 0.02562 * 21 19 18 35 35 H 1.08997 * 115.54989 * 9.33136 * 22 21 19 36 36 H 1.09003 * 117.50007 * 0.02562 * 23 22 21 37 37 H 1.09005 * 117.49974 * 145.02459 * 23 22 21 38 38 H 1.08992 * 117.49844 * 252.51656 * 24 23 22 39 39 H 1.08992 * 117.51739 * 107.47907 * 24 23 22 40 40 H 1.07996 * 120.07599 * 179.97438 * 25 18 17 41 41 H 1.08004 * 119.92234 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5000 -2.1088 -0.2744 9 6 3.4622 -1.2227 0.3808 10 1 4.0140 -0.5160 -0.2391 11 6 3.6119 -0.8346 1.8532 12 17 5.3621 -0.6928 2.2625 13 8 3.9813 -2.5389 0.1801 14 6 5.3703 -2.5711 -0.1539 15 6 5.8086 -4.0006 -0.3425 16 6 6.2928 -4.7204 0.7353 17 6 6.6903 -6.0312 0.5707 18 6 6.6139 -6.6273 -0.6891 19 6 7.0443 -8.0297 -0.8741 20 8 6.9771 -8.5460 -1.9725 21 7 7.5112 -8.7353 0.1749 22 6 7.9372 -10.1250 -0.0085 23 6 7.5015 -11.1426 1.0478 24 6 8.9605 -10.6866 0.9808 25 6 6.1299 -5.8938 -1.7734 26 6 5.7299 -4.5857 -1.5937 27 1 -0.4850 -0.8367 -0.0739 28 1 3.1191 0.1217 2.0287 29 1 3.1531 -1.6000 2.4792 30 1 5.5350 -2.0161 -1.0775 31 1 5.9482 -2.1168 0.6509 32 1 6.3551 -4.2567 1.7087 33 1 7.0642 -6.5933 1.4136 34 1 7.5645 -8.3233 1.0514 35 1 7.9966 -10.4660 -1.0420 36 1 6.8976 -10.7782 1.8788 37 1 7.2742 -12.1534 0.7092 38 1 9.6928 -11.3973 0.5980 39 1 9.3170 -10.0219 1.7676 40 1 6.0686 -6.3491 -2.7507 41 1 5.3555 -4.0169 -2.4321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223822454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:53 Heat of formation + Delta-G solvation = -63.580757 kcal Electronic energy + Delta-G solvation = -23805.018600 eV Core-core repulsion = 20096.617257 eV Total energy + Delta-G solvation = -3708.401343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39273 -39.97693 -38.83528 -37.99435 -36.68151 -35.32966 -34.31718 -32.99479 -31.94356 -31.42580 -27.65228 -26.70629 -24.22757 -23.72008 -23.28034 -22.66336 -22.44785 -21.52326 -19.85882 -19.09791 -17.89183 -17.68494 -16.92831 -16.70892 -16.15172 -16.04928 -15.84728 -15.62882 -15.38167 -15.17645 -14.78183 -14.67024 -14.48482 -14.46003 -13.78411 -13.67075 -13.52212 -13.32894 -12.70632 -12.56730 -12.53501 -12.38362 -12.36641 -12.12107 -11.82492 -11.71632 -11.51053 -11.32075 -11.17119 -11.11425 -10.57086 -10.12089 -10.05531 -10.00836 -9.72267 -8.92505 -6.57487 -0.32312 0.33900 1.32313 1.44372 1.49648 1.63671 1.67078 1.94005 2.36770 2.62555 2.90964 2.98911 3.20889 3.55142 3.70987 3.78119 3.90332 3.95981 4.04098 4.05560 4.10080 4.24470 4.30814 4.32327 4.43708 4.58550 4.62794 4.74261 4.76108 4.78216 4.98102 5.01371 5.04911 5.16972 5.19878 5.27094 5.43073 5.54336 5.56810 5.80551 5.87805 6.22861 6.38042 6.68053 7.05730 7.23285 8.46969 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.002496 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.990301 B =11216.262031 C =11724.624562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 1.068 2.932 4 H -0.279 1.279 5 H -0.234 1.234 6 H -0.258 1.258 7 C -0.611 4.611 8 H 0.025 0.975 9 C 0.199 3.801 10 H 0.032 0.968 11 C -0.043 4.043 12 Cl -0.206 7.206 13 O -0.388 6.388 14 C 0.075 3.925 15 C -0.064 4.064 16 C -0.109 4.109 17 C -0.074 4.074 18 C -0.148 4.148 19 C 0.565 3.435 20 O -0.578 6.578 21 N -0.684 5.684 22 C 0.047 3.953 23 C -0.186 4.186 24 C -0.168 4.168 25 C -0.071 4.071 26 C -0.118 4.118 27 H 0.258 0.742 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.416 0.584 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.719 -13.868 5.654 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.208 4.208 3 Si 0.887 3.113 4 H -0.204 1.204 5 H -0.158 1.158 6 H -0.183 1.183 7 C -0.648 4.648 8 H 0.043 0.957 9 C 0.140 3.860 10 H 0.049 0.951 11 C -0.106 4.106 12 Cl -0.179 7.179 13 O -0.308 6.308 14 C -0.001 4.001 15 C -0.064 4.064 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.151 4.151 19 C 0.354 3.646 20 O -0.459 6.459 21 N -0.335 5.335 22 C -0.058 4.058 23 C -0.224 4.224 24 C -0.206 4.206 25 C -0.089 4.089 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.477 -12.781 5.013 23.829 hybrid contribution -0.498 -1.454 -0.095 1.539 sum 18.980 -14.235 4.918 24.229 Atomic orbital electron populations 1.70970 1.07904 1.30479 1.45682 1.27210 0.96067 1.05752 0.91754 0.83806 0.75465 0.71768 0.80233 1.20413 1.15833 1.18271 1.22029 0.95442 0.95528 1.51807 0.95684 1.20064 0.93561 0.82231 0.90106 0.95070 1.26007 0.79328 1.04572 1.00680 1.98619 1.25924 1.98561 1.94842 1.87960 1.23263 1.29103 1.90483 1.21888 0.83990 0.93285 1.00977 1.20096 0.96595 0.95472 0.94261 1.21250 0.98186 0.94347 0.98927 1.21505 0.97080 0.94645 0.96031 1.19925 1.05874 0.93602 0.95683 1.18373 0.76305 0.85886 0.84026 1.90735 1.56512 1.72039 1.26571 1.45167 1.64027 1.12422 1.11859 1.21701 1.05164 0.81208 0.97773 1.23520 0.98139 0.99743 1.01009 1.23485 0.92769 1.03280 1.01054 1.21272 0.95229 0.93353 0.99089 1.21198 0.99560 0.95125 0.97695 0.93271 0.88441 0.89287 0.92925 0.89776 0.83647 0.81876 0.74598 0.86306 0.87702 0.87206 0.86649 0.86988 0.84911 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 13.70 21.45 0.29 -54.16 16 2 C -0.01 -0.38 5.30 84.65 0.45 0.07 16 3 Si 1.07 45.13 26.28 68.60 1.80 46.93 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.23 -8.50 5.72 99.48 0.57 -7.93 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.61 -33.65 9.15 25.60 0.23 -33.42 16 8 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 9 C 0.20 8.93 1.95 29.85 0.06 8.99 16 10 H 0.03 1.37 6.45 -2.39 -0.02 1.35 16 11 C -0.04 -1.69 6.00 71.98 0.43 -1.26 16 12 Cl -0.21 -6.62 26.15 -2.72 -0.07 -6.69 16 13 O -0.39 -16.82 9.94 -148.98 -1.48 -18.31 16 14 C 0.07 2.52 5.67 71.24 0.40 2.92 16 15 C -0.06 -1.90 5.52 -19.81 -0.11 -2.01 16 16 C -0.11 -2.64 9.68 22.23 0.22 -2.43 16 17 C -0.07 -1.48 9.54 22.53 0.21 -1.27 16 18 C -0.15 -3.64 5.87 -20.09 -0.12 -3.75 16 19 C 0.57 14.11 7.77 86.79 0.67 14.78 16 20 O -0.58 -18.82 15.91 -3.88 -0.06 -18.88 16 21 N -0.68 -11.56 5.52 -445.40 -2.46 -14.02 16 22 C 0.05 0.72 6.43 44.99 0.29 1.01 16 23 C -0.19 -1.94 10.46 30.59 0.32 -1.62 16 24 C -0.17 -1.47 10.46 30.60 0.32 -1.15 16 25 C -0.07 -1.95 9.60 22.53 0.22 -1.74 16 26 C -0.12 -3.43 9.68 22.23 0.22 -3.21 16 27 H 0.26 15.67 8.73 -92.71 -0.81 14.86 16 28 H 0.10 3.84 4.82 -2.39 -0.01 3.83 16 29 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.05 1.72 8.03 -2.39 -0.02 1.71 16 31 H 0.08 2.61 5.08 -2.39 -0.01 2.60 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.16 1.81 6.41 -2.91 -0.02 1.79 16 34 H 0.42 4.42 6.86 -92.71 -0.64 3.78 16 35 H 0.12 2.31 7.40 -2.39 -0.02 2.29 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.13 3.65 7.65 -2.91 -0.02 3.62 16 41 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -68.86 356.81 2.09 -66.77 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.25 Total: 22.44 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 3.82 Total: -24.08 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -2.16 Total: -68.18 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.54 Total: -37.18 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.80 Total: 46.93 kcal Atomic # 17 Polarization: -6.62 SS G_CDS: -0.07 Total: -6.69 kcal Total: -68.86 2.09 -66.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223822454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.187 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds