Wall clock time and date at job start Sat Apr 11 2020 00:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48493 * 109.46854 * 85.00877 * 3 2 1 5 5 H 1.48497 * 109.47108 * 205.00756 * 3 2 1 6 6 H 1.48501 * 109.47052 * 325.00731 * 3 2 1 7 7 C 1.37875 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99539 * 5.34102 * 7 2 1 9 9 C 1.50700 * 120.00282 * 185.34447 * 7 2 1 10 10 H 1.09002 * 109.47065 * 5.57917 * 9 7 2 11 11 O 1.42899 * 109.47138 * 125.57642 * 9 7 2 12 12 C 1.35905 * 117.00171 * 274.95398 * 11 9 7 13 13 C 1.36578 * 120.15443 * 5.16787 * 12 11 9 14 14 C 1.39191 * 121.03481 * 179.76346 * 13 12 11 15 15 C 1.36411 * 120.90617 * 0.49270 * 14 13 12 16 16 F 1.35096 * 120.16228 * 179.79490 * 15 14 13 17 17 C 1.40599 * 119.66977 * 359.77247 * 15 14 13 18 18 C 1.40724 * 121.37375 * 179.97438 * 17 15 14 19 19 C 1.36586 * 118.15156 * 180.02562 * 18 17 15 20 20 C 1.39323 * 119.93715 * 0.02562 * 19 18 17 21 21 N 1.31094 * 121.72925 * 0.02562 * 20 19 18 22 22 C 1.33625 * 121.32571 * 359.95498 * 21 20 19 23 23 C 1.50698 * 109.47216 * 245.57925 * 9 7 2 24 24 C 1.38236 * 120.00018 * 274.81052 * 23 9 7 25 25 C 1.38234 * 120.00177 * 179.80886 * 24 23 9 26 26 C 1.38233 * 119.99858 * 0.39438 * 25 24 23 27 27 C 1.38237 * 119.99898 * 359.85852 * 26 25 24 28 28 C 1.38224 * 120.00109 * 359.95508 * 27 26 25 29 29 H 0.97000 * 120.00562 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.47634 * 359.97438 * 13 12 11 31 31 H 1.07997 * 119.54603 * 180.24474 * 14 13 12 32 32 H 1.07997 * 120.92386 * 0.04399 * 18 17 15 33 33 H 1.08002 * 120.03537 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.13812 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.99753 * 359.97438 * 24 23 9 36 36 H 1.08005 * 120.00381 * 180.22526 * 25 24 23 37 37 H 1.08000 * 120.00168 * 179.83051 * 26 25 24 38 38 H 1.08000 * 119.99587 * 179.97438 * 27 26 25 39 39 H 1.08003 * 120.00357 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3909 2.1074 1.3947 5 1 3.5953 1.4122 -0.5919 6 1 1.5031 2.6200 -0.8029 7 6 2.0046 -1.1940 -0.0005 8 1 1.4681 -2.1272 -0.0880 9 6 3.5066 -1.1968 0.1210 10 1 3.8588 -0.1805 0.2979 11 8 3.8946 -2.0321 1.2136 12 6 3.9030 -1.4672 2.4496 13 6 3.4513 -0.1900 2.6233 14 6 3.4472 0.4048 3.8817 15 6 3.9041 -0.2686 4.9765 16 9 3.8970 0.3248 6.1901 17 6 4.3819 -1.5833 4.8355 18 6 4.8619 -2.3108 5.9404 19 6 5.3111 -3.5831 5.7283 20 6 5.2857 -4.1246 4.4448 21 7 4.8386 -3.4433 3.4179 22 6 4.3847 -2.1942 3.5572 23 6 4.1128 -1.7236 -1.1541 24 6 4.2613 -3.0857 -1.3376 25 6 4.8138 -3.5692 -2.5089 26 6 5.2252 -2.6903 -3.4933 27 6 5.0815 -1.3280 -3.3076 28 6 4.5256 -0.8447 -2.1380 29 1 -0.4851 0.8400 0.0004 30 1 3.0885 0.3658 1.7713 31 1 3.0809 1.4148 3.9921 32 1 4.8745 -1.8753 6.9285 33 1 5.6865 -4.1687 6.5545 34 1 5.6443 -5.1316 4.2917 35 1 3.9433 -3.7722 -0.5669 36 1 4.9264 -4.6335 -2.6538 37 1 5.6593 -3.0678 -4.4073 38 1 5.4033 -0.6413 -4.0766 39 1 4.4129 0.2196 -1.9931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228747216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:41 Heat of formation + Delta-G solvation = 9.478828 kcal Electronic energy + Delta-G solvation = -26479.322502 eV Core-core repulsion = 22653.061805 eV Total energy + Delta-G solvation = -3826.260697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.62356 -40.67189 -39.06763 -37.91984 -35.89087 -33.38642 -32.68464 -31.34160 -30.50465 -30.30501 -28.50642 -27.51264 -24.20163 -23.73104 -23.24610 -22.09677 -21.38968 -20.33263 -18.48805 -17.82536 -17.37330 -17.25786 -16.46789 -16.22608 -15.51768 -15.23868 -15.07542 -14.67785 -14.43708 -14.20753 -14.13835 -13.58782 -13.41586 -13.13564 -13.01721 -12.93383 -12.83710 -12.70222 -12.27360 -12.16003 -11.73296 -11.37222 -11.07266 -10.95473 -10.64949 -10.47677 -10.31127 -9.98461 -9.77450 -9.41248 -9.39896 -8.98655 -8.72397 -8.33213 -8.01810 -7.20499 -6.48191 -4.52178 0.64646 0.88580 1.96330 2.01086 2.14479 2.91890 2.98787 3.06637 3.12610 3.75166 3.97452 4.24028 4.34107 4.43292 4.50227 4.75988 4.87584 4.98067 5.00122 5.13260 5.39679 5.43399 5.45533 5.47767 5.60385 5.65083 5.80641 5.95526 5.98289 6.05960 6.17301 6.20987 6.21921 6.49205 6.54971 6.58862 6.63013 6.66659 6.97062 7.02756 7.09472 7.11012 7.31688 7.60267 7.88706 8.07448 8.25860 8.67168 9.09249 10.63304 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.005344 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.053086 B = 5238.460803 C = 6924.258559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.087 3.913 3 Si 0.844 3.156 4 H -0.261 1.261 5 H -0.252 1.252 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.199 3.801 10 H 0.050 0.950 11 O -0.289 6.289 12 C 0.203 3.797 13 C -0.204 4.204 14 C -0.085 4.085 15 C 0.041 3.959 16 F -0.142 7.142 17 C -0.091 4.091 18 C -0.068 4.068 19 C -0.165 4.165 20 C 0.108 3.892 21 N -0.435 5.435 22 C 0.118 3.882 23 C -0.036 4.036 24 C -0.099 4.099 25 C -0.124 4.124 26 C -0.142 4.142 27 C -0.123 4.123 28 C -0.124 4.124 29 H 0.272 0.728 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -2.590 5.820 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.120 4.120 3 Si 0.671 3.329 4 H -0.187 1.187 5 H -0.177 1.177 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.108 0.892 9 C 0.145 3.855 10 H 0.068 0.932 11 O -0.200 6.200 12 C 0.152 3.848 13 C -0.225 4.225 14 C -0.104 4.104 15 C 0.020 3.980 16 F -0.121 7.121 17 C -0.094 4.094 18 C -0.094 4.094 19 C -0.185 4.185 20 C -0.065 4.065 21 N -0.142 5.142 22 C -0.004 4.004 23 C -0.036 4.036 24 C -0.117 4.117 25 C -0.142 4.142 26 C -0.160 4.160 27 C -0.141 4.141 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.567 -2.947 4.856 11.997 hybrid contribution -0.034 1.671 0.946 1.921 sum 10.532 -1.276 5.802 12.092 Atomic orbital electron populations 1.69841 1.06111 1.27727 1.46305 1.25054 0.94840 0.98588 0.93485 0.87503 0.81265 0.84671 0.79476 1.18665 1.17698 1.20060 1.21183 0.87717 0.95898 1.51732 0.89235 1.19679 0.95674 0.89794 0.80362 0.93223 1.86200 1.79944 1.41637 1.12200 1.18385 0.90744 0.89965 0.85681 1.21002 1.06807 0.96091 0.98550 1.20645 0.97961 1.00567 0.91224 1.16859 1.08518 0.91704 0.80878 1.91425 1.95124 1.83443 1.42118 1.18469 1.02192 0.94137 0.94569 1.21251 0.95773 0.94342 0.98053 1.21845 1.01495 0.96182 0.98942 1.22944 0.95699 0.99757 0.88098 1.68075 1.07622 1.05407 1.33072 1.18026 1.01045 0.91434 0.89937 1.19892 0.93937 0.93785 0.95988 1.20996 0.98335 0.95289 0.97113 1.21063 0.99903 0.99042 0.94201 1.20937 1.02496 0.93534 0.99049 1.20926 1.00600 0.95404 0.97150 1.20933 0.99642 0.99497 0.94187 0.91700 0.83691 0.84727 0.84284 0.84594 0.82400 0.85688 0.86794 0.87019 0.86804 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.43 13.96 55.43 0.77 -23.66 16 2 C 0.09 2.30 5.28 -17.82 -0.09 2.21 16 3 Si 0.84 18.88 24.67 -169.99 -4.19 14.68 16 4 H -0.26 -5.50 6.71 56.52 0.38 -5.12 16 5 H -0.25 -5.25 4.92 56.52 0.28 -4.97 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.07 8.67 -34.44 -0.30 -14.37 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.20 4.63 1.91 -29.04 -0.06 4.57 16 10 H 0.05 1.14 3.40 -51.93 -0.18 0.96 16 11 O -0.29 -6.67 8.72 -19.44 -0.17 -6.84 16 12 C 0.20 4.38 6.62 -39.14 -0.26 4.12 16 13 C -0.20 -4.28 8.66 -39.83 -0.34 -4.63 16 14 C -0.08 -1.55 9.92 -39.89 -0.40 -1.94 16 15 C 0.04 0.70 7.25 -39.35 -0.29 0.41 16 16 F -0.14 -2.25 16.68 2.25 0.04 -2.21 16 17 C -0.09 -1.56 5.75 -106.76 -0.61 -2.17 16 18 C -0.07 -0.92 9.71 -39.24 -0.38 -1.30 16 19 C -0.16 -1.91 10.03 -39.77 -0.40 -2.31 16 20 C 0.11 1.46 11.15 -17.46 -0.19 1.27 16 21 N -0.43 -7.92 10.13 -10.89 -0.11 -8.03 16 22 C 0.12 2.31 6.62 -84.74 -0.56 1.74 16 23 C -0.04 -0.76 4.99 -104.62 -0.52 -1.29 16 24 C -0.10 -1.97 9.35 -39.58 -0.37 -2.34 16 25 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 26 C -0.14 -2.24 10.05 -39.58 -0.40 -2.63 16 27 C -0.12 -2.04 10.05 -39.59 -0.40 -2.44 16 28 C -0.12 -2.43 9.68 -39.59 -0.38 -2.82 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.15 3.22 1.39 -52.49 -0.07 3.15 16 31 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.14 1.53 7.78 -52.49 -0.41 1.12 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.13 2.53 7.62 -52.49 -0.40 2.13 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.12 2.21 6.60 -52.48 -0.35 1.87 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -29.55 330.12 -8.68 -38.23 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.64 Total: 9.24 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -6.35 Total: -26.39 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.66 Total: -31.69 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.17 Total: -6.84 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.19 Total: 14.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.55 -8.68 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228747216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.710 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds