Wall clock time and date at job start Sat Apr 11 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48493 * 109.46854 * 85.00877 * 3 2 1 5 5 H 1.48497 * 109.47108 * 205.00756 * 3 2 1 6 6 H 1.48501 * 109.47052 * 325.00731 * 3 2 1 7 7 C 1.37875 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99539 * 5.34102 * 7 2 1 9 9 C 1.50700 * 120.00282 * 185.34447 * 7 2 1 10 10 H 1.09002 * 109.47065 * 5.57917 * 9 7 2 11 11 O 1.42899 * 109.47138 * 125.57642 * 9 7 2 12 12 C 1.35905 * 117.00171 * 274.95398 * 11 9 7 13 13 C 1.36578 * 120.15443 * 5.16787 * 12 11 9 14 14 C 1.39191 * 121.03481 * 179.76346 * 13 12 11 15 15 C 1.36411 * 120.90617 * 0.49270 * 14 13 12 16 16 F 1.35096 * 120.16228 * 179.79490 * 15 14 13 17 17 C 1.40599 * 119.66977 * 359.77247 * 15 14 13 18 18 C 1.40724 * 121.37375 * 179.97438 * 17 15 14 19 19 C 1.36586 * 118.15156 * 180.02562 * 18 17 15 20 20 C 1.39323 * 119.93715 * 0.02562 * 19 18 17 21 21 N 1.31094 * 121.72925 * 0.02562 * 20 19 18 22 22 C 1.33625 * 121.32571 * 359.95498 * 21 20 19 23 23 C 1.50698 * 109.47216 * 245.57925 * 9 7 2 24 24 C 1.38236 * 120.00018 * 274.81052 * 23 9 7 25 25 C 1.38234 * 120.00177 * 179.80886 * 24 23 9 26 26 C 1.38233 * 119.99858 * 0.39438 * 25 24 23 27 27 C 1.38237 * 119.99898 * 359.85852 * 26 25 24 28 28 C 1.38224 * 120.00109 * 359.95508 * 27 26 25 29 29 H 0.97000 * 120.00562 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.47634 * 359.97438 * 13 12 11 31 31 H 1.07997 * 119.54603 * 180.24474 * 14 13 12 32 32 H 1.07997 * 120.92386 * 0.04399 * 18 17 15 33 33 H 1.08002 * 120.03537 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.13812 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.99753 * 359.97438 * 24 23 9 36 36 H 1.08005 * 120.00381 * 180.22526 * 25 24 23 37 37 H 1.08000 * 120.00168 * 179.83051 * 26 25 24 38 38 H 1.08000 * 119.99587 * 179.97438 * 27 26 25 39 39 H 1.08003 * 120.00357 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3909 2.1074 1.3947 5 1 3.5953 1.4122 -0.5919 6 1 1.5031 2.6200 -0.8029 7 6 2.0046 -1.1940 -0.0005 8 1 1.4681 -2.1272 -0.0880 9 6 3.5066 -1.1968 0.1210 10 1 3.8588 -0.1805 0.2979 11 8 3.8946 -2.0321 1.2136 12 6 3.9030 -1.4672 2.4496 13 6 3.4513 -0.1900 2.6233 14 6 3.4472 0.4048 3.8817 15 6 3.9041 -0.2686 4.9765 16 9 3.8970 0.3248 6.1901 17 6 4.3819 -1.5833 4.8355 18 6 4.8619 -2.3108 5.9404 19 6 5.3111 -3.5831 5.7283 20 6 5.2857 -4.1246 4.4448 21 7 4.8386 -3.4433 3.4179 22 6 4.3847 -2.1942 3.5572 23 6 4.1128 -1.7236 -1.1541 24 6 4.2613 -3.0857 -1.3376 25 6 4.8138 -3.5692 -2.5089 26 6 5.2252 -2.6903 -3.4933 27 6 5.0815 -1.3280 -3.3076 28 6 4.5256 -0.8447 -2.1380 29 1 -0.4851 0.8400 0.0004 30 1 3.0885 0.3658 1.7713 31 1 3.0809 1.4148 3.9921 32 1 4.8745 -1.8753 6.9285 33 1 5.6865 -4.1687 6.5545 34 1 5.6443 -5.1316 4.2917 35 1 3.9433 -3.7722 -0.5669 36 1 4.9264 -4.6335 -2.6538 37 1 5.6593 -3.0678 -4.4073 38 1 5.4033 -0.6413 -4.0766 39 1 4.4129 0.2196 -1.9931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228747216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:40 Heat of formation + Delta-G solvation = -7.603577 kcal Electronic energy + Delta-G solvation = -26480.063251 eV Core-core repulsion = 22653.061805 eV Total energy + Delta-G solvation = -3827.001446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96231 -42.01697 -40.54695 -39.34315 -37.30127 -35.21185 -34.05134 -32.91671 -31.78121 -31.70990 -29.91860 -29.27295 -25.57893 -25.11781 -24.78452 -23.52377 -22.76781 -21.84066 -19.97750 -19.37078 -19.04075 -18.66374 -17.85528 -17.55323 -16.94838 -16.75339 -16.40693 -16.13667 -15.76721 -15.67523 -15.58662 -15.04779 -14.93093 -14.68336 -14.55499 -14.38803 -14.20565 -13.93229 -13.66902 -13.60237 -13.34068 -12.85433 -12.65315 -12.38504 -12.19179 -11.97179 -11.84493 -11.69418 -11.41108 -10.97488 -10.93167 -10.58744 -10.01035 -9.74210 -9.51088 -8.68817 -8.52817 -6.62824 -0.61526 -0.39497 0.53491 0.59179 0.84744 1.13939 1.17339 1.25739 1.81406 2.08020 2.20773 2.86644 2.94084 3.02132 3.03162 3.23454 3.60457 3.64175 3.82917 3.96633 3.97642 4.06111 4.18512 4.26449 4.30781 4.36031 4.39469 4.45722 4.64359 4.76090 4.80539 4.89777 4.96986 5.09197 5.12685 5.18578 5.21107 5.24520 5.43049 5.64055 5.67886 5.68864 5.83441 5.97526 6.20751 6.37871 6.54630 6.92299 7.05513 8.63441 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.005344 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.053086 B = 5238.460803 C = 6924.258559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.040 3.960 3 Si 0.898 3.102 4 H -0.243 1.243 5 H -0.232 1.232 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.034 0.966 9 C 0.209 3.791 10 H 0.050 0.950 11 O -0.305 6.305 12 C 0.162 3.838 13 C -0.221 4.221 14 C -0.104 4.104 15 C 0.059 3.941 16 F -0.129 7.129 17 C -0.106 4.106 18 C -0.069 4.069 19 C -0.141 4.141 20 C 0.118 3.882 21 N -0.485 5.485 22 C 0.100 3.900 23 C -0.072 4.072 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.117 4.117 28 C -0.143 4.143 29 H 0.276 0.724 30 H 0.129 0.871 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.191 0.809 34 H 0.197 0.803 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.033 -3.136 6.920 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.162 4.162 3 Si 0.720 3.280 4 H -0.167 1.167 5 H -0.156 1.156 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.053 0.947 9 C 0.155 3.845 10 H 0.068 0.932 11 O -0.217 6.217 12 C 0.114 3.886 13 C -0.241 4.241 14 C -0.123 4.123 15 C 0.039 3.961 16 F -0.108 7.108 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.160 4.160 20 C -0.055 4.055 21 N -0.193 5.193 22 C -0.022 4.022 23 C -0.072 4.072 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.135 4.135 28 C -0.161 4.161 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.189 0.811 33 H 0.208 0.792 34 H 0.214 0.786 35 H 0.122 0.878 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.852 -3.499 5.974 15.486 hybrid contribution -0.929 1.539 0.774 1.957 sum 12.923 -1.960 6.748 14.710 Atomic orbital electron populations 1.69986 1.08014 1.28883 1.48632 1.25802 0.95483 1.02235 0.92639 0.86620 0.80858 0.79788 0.80740 1.16723 1.15569 1.19489 1.21169 0.89966 0.93962 1.52089 0.94740 1.19450 0.93336 0.90214 0.81494 0.93211 1.86128 1.80818 1.41808 1.12984 1.18830 0.92981 0.91051 0.85781 1.20980 1.07662 0.96190 0.99275 1.20733 0.99303 1.01611 0.90651 1.16845 1.06740 0.91648 0.80854 1.91455 1.94882 1.83271 1.41201 1.18715 1.02803 0.94405 0.94957 1.21705 0.94843 0.94902 0.98032 1.22402 0.98674 0.95504 0.99428 1.23807 0.92781 1.00729 0.88143 1.68073 1.10058 1.05506 1.35653 1.18072 1.01735 0.92289 0.90058 1.19968 0.96342 0.95041 0.95866 1.20988 1.00020 0.94569 0.98423 1.21418 0.98431 1.01061 0.92975 1.21459 1.00520 0.92915 0.99855 1.21375 0.98847 0.96754 0.96515 1.21107 1.00651 0.99272 0.95096 0.91484 0.85324 0.82947 0.81137 0.79154 0.78618 0.87784 0.83738 0.82542 0.83057 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.96 21.45 0.30 -55.28 16 2 C 0.04 2.28 5.28 84.66 0.45 2.73 16 3 Si 0.90 40.56 24.67 68.60 1.69 42.25 16 4 H -0.24 -10.14 6.71 99.48 0.67 -9.48 16 5 H -0.23 -9.60 4.92 99.48 0.49 -9.11 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -31.13 8.67 25.60 0.22 -30.91 16 8 H 0.03 2.30 8.06 -2.91 -0.02 2.27 16 9 C 0.21 10.50 1.91 29.10 0.06 10.56 16 10 H 0.05 2.43 3.40 -2.39 -0.01 2.43 16 11 O -0.31 -15.35 8.72 -92.48 -0.81 -16.16 16 12 C 0.16 7.51 6.62 22.55 0.15 7.66 16 13 C -0.22 -9.78 8.66 22.11 0.19 -9.59 16 14 C -0.10 -3.87 9.92 22.07 0.22 -3.65 16 15 C 0.06 2.00 7.25 22.42 0.16 2.16 16 16 F -0.13 -3.81 16.68 44.97 0.75 -3.06 16 17 C -0.11 -3.53 5.75 -21.25 -0.12 -3.65 16 18 C -0.07 -1.61 9.71 22.49 0.22 -1.39 16 19 C -0.14 -2.59 10.03 22.14 0.22 -2.37 16 20 C 0.12 2.85 11.15 85.06 0.95 3.80 16 21 N -0.48 -17.76 10.13 -188.37 -1.91 -19.67 16 22 C 0.10 4.01 6.62 40.39 0.27 4.28 16 23 C -0.07 -3.26 4.99 -19.87 -0.10 -3.36 16 24 C -0.12 -5.09 9.35 22.27 0.21 -4.88 16 25 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 26 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 27 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 28 C -0.14 -5.63 9.68 22.27 0.22 -5.41 16 29 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.13 6.02 1.39 -2.91 0.00 6.02 16 31 H 0.15 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.17 2.89 7.78 -2.91 -0.02 2.87 16 33 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.10 4.63 7.62 -2.91 -0.02 4.61 16 36 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.12 4.41 6.60 -2.91 -0.02 4.39 16 Total: -1.00 -74.18 330.12 4.86 -69.33 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.85 Total: 27.15 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 3.98 Total: -44.57 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.61 Total: -74.94 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.81 Total: -16.16 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.75 Total: -3.06 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.69 Total: 42.25 kcal Total: -74.18 4.86 -69.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228747216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.724 kcal (2) G-P(sol) polarization free energy of solvation -74.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds