Wall clock time and date at job start Sat Apr 11 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99880 * 2 1 4 4 H 1.48499 * 109.46601 * 94.79647 * 3 2 1 5 5 H 1.48501 * 109.46846 * 214.79430 * 3 2 1 6 6 H 1.48502 * 109.46978 * 334.79845 * 3 2 1 7 7 C 1.37873 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99644 * 5.80312 * 7 2 1 9 9 C 1.50702 * 120.00339 * 185.80500 * 7 2 1 10 10 H 1.08997 * 109.46598 * 4.70559 * 9 7 2 11 11 O 1.42900 * 109.47082 * 124.70824 * 9 7 2 12 12 C 1.35502 * 116.99782 * 270.00029 * 11 9 7 13 13 N 1.31747 * 120.12787 * 359.72501 * 12 11 9 14 14 C 1.32669 * 122.67603 * 179.74807 * 13 12 11 15 15 C 1.36068 * 121.96143 * 0.53837 * 14 13 12 16 16 C 1.40814 * 118.81600 * 359.73991 * 15 14 13 17 17 C 1.40204 * 122.15448 * 180.02562 * 16 15 14 18 18 C 1.36224 * 119.51594 * 180.02562 * 17 16 15 19 19 C 1.39518 * 120.95996 * 359.97438 * 18 17 16 20 20 F 1.35105 * 119.49874 * 179.97438 * 19 18 17 21 21 C 1.36459 * 120.99810 * 359.97438 * 19 18 17 22 22 C 1.40152 * 119.52062 * 0.02562 * 21 19 18 23 23 C 1.50696 * 109.46810 * 244.71250 * 9 7 2 24 24 C 1.38241 * 119.99985 * 278.64032 * 23 9 7 25 25 C 1.38233 * 119.99850 * 179.81415 * 24 23 9 26 26 C 1.38230 * 120.00391 * 0.40185 * 25 24 23 27 27 C 1.38233 * 119.99778 * 359.85303 * 26 25 24 28 28 C 1.38234 * 120.00219 * 98.92310 * 23 9 7 29 29 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.01623 * 180.25420 * 14 13 12 31 31 H 1.08001 * 120.59380 * 179.76294 * 15 14 13 32 32 H 1.08001 * 120.24365 * 0.04119 * 17 16 15 33 33 H 1.07997 * 119.52415 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.23852 * 180.02562 * 21 19 18 35 35 H 1.08001 * 119.99745 * 0.02562 * 24 23 9 36 36 H 1.08007 * 119.99491 * 180.23010 * 25 24 23 37 37 H 1.07997 * 120.00409 * 179.83569 * 26 25 24 38 38 H 1.08006 * 120.00172 * 179.97438 * 27 26 25 39 39 H 1.07999 * 119.99952 * 359.96945 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5980 1.9879 1.3952 5 1 3.4924 1.4716 -0.7989 6 1 1.3995 2.6799 -0.5962 7 6 2.0046 -1.1940 -0.0005 8 1 1.4687 -2.1269 -0.0955 9 6 3.5058 -1.1974 0.1315 10 1 3.8580 -0.1797 0.2994 11 8 3.8850 -2.0212 1.2359 12 6 3.9858 -1.4196 2.4459 13 7 3.7441 -0.1300 2.5654 14 6 3.8229 0.5090 3.7254 15 6 4.1717 -0.1277 4.8762 16 6 4.4513 -1.5071 4.8308 17 6 4.8165 -2.2324 5.9737 18 6 5.0757 -3.5656 5.8681 19 6 4.9824 -4.2198 4.6393 20 9 5.2465 -5.5428 4.5683 21 6 4.6285 -3.5435 3.5082 22 6 4.3550 -2.1708 3.5814 23 6 4.1200 -1.7392 -1.1335 24 6 4.1956 -3.1047 -1.3355 25 6 4.7555 -3.6015 -2.4976 26 6 5.2473 -2.7332 -3.4541 27 6 5.1764 -1.3678 -3.2498 28 6 4.6130 -0.8708 -2.0894 29 1 -0.4850 0.8401 0.0004 30 1 3.6082 1.5670 3.7563 31 1 4.2327 0.4151 5.8079 32 1 4.8916 -1.7378 6.9309 33 1 5.3575 -4.1243 6.7483 34 1 4.5597 -4.0622 2.5634 35 1 3.8142 -3.7832 -0.5868 36 1 4.8112 -4.6683 -2.6569 37 1 5.6871 -3.1214 -4.3608 38 1 5.5610 -0.6893 -3.9970 39 1 4.5576 0.1959 -1.9299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229516040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:58:45 Heat of formation + Delta-G solvation = -15.771868 kcal Electronic energy + Delta-G solvation = -26358.414877 eV Core-core repulsion = 22531.059227 eV Total energy + Delta-G solvation = -3827.355650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.95060 -41.97525 -40.35880 -39.07760 -37.72366 -35.12853 -33.63039 -32.63500 -32.08421 -31.72507 -30.04792 -29.14873 -25.66278 -24.75409 -24.50905 -23.57255 -22.96428 -21.86231 -19.68054 -19.45422 -19.01603 -18.42030 -17.70763 -17.39411 -16.82183 -16.61301 -16.53001 -15.94287 -15.79054 -15.64592 -15.54974 -15.18569 -14.87800 -14.72372 -14.39876 -14.35111 -14.19327 -13.96035 -13.49681 -13.40365 -12.92570 -12.85991 -12.69963 -12.53297 -12.35430 -12.08079 -11.86996 -11.59997 -11.40075 -10.84617 -10.63968 -10.37794 -10.11707 -9.76621 -9.52886 -8.68300 -8.46113 -6.57519 -0.57745 -0.23265 0.52002 0.56353 0.89122 1.28821 1.38873 1.44703 1.95519 2.15020 2.29122 2.92709 3.02622 3.05766 3.14335 3.48241 3.57901 3.79704 3.87879 3.96322 4.06032 4.14398 4.21078 4.30811 4.35089 4.45037 4.53337 4.74050 4.76180 4.79152 4.83374 4.88955 4.98066 5.07435 5.13885 5.21788 5.27826 5.28969 5.53550 5.62558 5.65008 5.78208 5.82988 6.01493 6.19041 6.43245 6.57563 7.08236 7.16029 8.68561 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.005385 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.407068 B = 5198.802953 C = 6933.334576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.044 3.956 3 Si 0.938 3.062 4 H -0.236 1.236 5 H -0.253 1.253 6 H -0.292 1.292 7 C -0.530 4.530 8 H 0.028 0.972 9 C 0.223 3.777 10 H 0.062 0.938 11 O -0.318 6.318 12 C 0.356 3.644 13 N -0.573 5.573 14 C 0.100 3.900 15 C -0.188 4.188 16 C -0.018 4.018 17 C -0.072 4.072 18 C -0.118 4.118 19 C 0.079 3.921 20 F -0.144 7.144 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.075 4.075 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.117 4.117 28 C -0.144 4.144 29 H 0.272 0.728 30 H 0.168 0.832 31 H 0.185 0.815 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.284 -2.123 9.185 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.158 4.158 3 Si 0.762 3.238 4 H -0.159 1.159 5 H -0.178 1.178 6 H -0.218 1.218 7 C -0.566 4.566 8 H 0.047 0.953 9 C 0.169 3.831 10 H 0.080 0.920 11 O -0.223 6.223 12 C 0.165 3.835 13 N -0.300 5.300 14 C -0.043 4.043 15 C -0.208 4.208 16 C -0.023 4.023 17 C -0.089 4.089 18 C -0.137 4.137 19 C 0.060 3.940 20 F -0.123 7.123 21 C -0.143 4.143 22 C -0.123 4.123 23 C -0.075 4.075 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.134 4.134 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.185 0.815 31 H 0.202 0.798 32 H 0.207 0.793 33 H 0.194 0.806 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.934 -1.808 8.397 16.369 hybrid contribution -0.578 0.068 0.088 0.589 sum 13.356 -1.740 8.485 15.919 Atomic orbital electron populations 1.70043 1.08329 1.28716 1.49444 1.25835 0.95329 1.02921 0.91701 0.85916 0.78578 0.78063 0.81269 1.15929 1.17763 1.21842 1.21094 0.90244 0.93557 1.51751 0.95320 1.19122 0.93010 0.91084 0.79869 0.92022 1.86147 1.80901 1.40529 1.14733 1.20271 0.88617 0.88204 0.86376 1.67136 1.21950 1.09616 1.31302 1.22318 0.94407 1.00751 0.86850 1.21976 1.04735 0.93153 1.00930 1.18420 0.97015 0.94880 0.91963 1.21240 0.96614 0.92892 0.98193 1.21322 1.00130 0.95845 0.96403 1.17517 1.03431 0.77987 0.95108 1.91488 1.91743 1.31815 1.97214 1.20850 1.00684 0.93572 0.99194 1.18020 1.07261 0.94278 0.92734 1.20121 0.95980 0.95007 0.96437 1.20997 1.00303 0.94418 0.98591 1.21427 0.98161 1.01095 0.93156 1.21454 1.00419 0.92913 1.00004 1.21381 0.98963 0.96686 0.96405 1.21130 1.00293 0.99237 0.95576 0.91942 0.81538 0.79804 0.79266 0.80571 0.85280 0.87646 0.83630 0.82511 0.83149 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.04 2.59 5.47 84.65 0.46 3.05 16 3 Si 0.94 45.51 25.93 68.60 1.78 47.29 16 4 H -0.24 -10.74 6.88 99.48 0.68 -10.05 16 5 H -0.25 -11.54 5.35 99.48 0.53 -11.01 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.53 -31.85 9.17 25.60 0.23 -31.61 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C 0.22 11.45 2.02 29.10 0.06 11.51 16 10 H 0.06 3.17 3.62 -2.39 -0.01 3.16 16 11 O -0.32 -15.62 8.32 -88.04 -0.73 -16.35 16 12 C 0.36 15.85 7.50 85.40 0.64 16.49 16 13 N -0.57 -24.99 7.38 -309.05 -2.28 -27.27 16 14 C 0.10 3.32 11.06 84.06 0.93 4.25 16 15 C -0.19 -4.77 9.87 22.40 0.22 -4.55 16 16 C -0.02 -0.49 5.75 -21.29 -0.12 -0.62 16 17 C -0.07 -1.33 9.81 22.28 0.22 -1.12 16 18 C -0.12 -2.27 9.92 22.11 0.22 -2.06 16 19 C 0.08 2.14 7.23 22.16 0.16 2.30 16 20 F -0.14 -3.94 17.24 44.97 0.78 -3.16 16 21 C -0.12 -4.13 9.55 22.32 0.21 -3.92 16 22 C -0.12 -4.38 5.75 -21.24 -0.12 -4.50 16 23 C -0.08 -3.45 4.96 -19.87 -0.10 -3.55 16 24 C -0.12 -5.18 9.36 22.27 0.21 -4.98 16 25 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 26 C -0.13 -3.73 10.05 22.27 0.22 -3.50 16 27 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 28 C -0.14 -5.85 9.67 22.27 0.22 -5.63 16 29 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.17 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.13 4.65 7.68 -2.91 -0.02 4.63 16 35 H 0.11 4.53 7.74 -2.91 -0.02 4.51 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 37 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.11 4.53 6.57 -2.91 -0.02 4.51 16 Total: -1.00 -77.01 337.78 4.84 -72.17 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.89 Total: 21.12 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.11 Total: -35.59 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.98 Total: -85.48 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.73 Total: -16.35 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.78 Total: 47.29 kcal Total: -77.01 4.84 -72.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229516040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.397 kcal (2) G-P(sol) polarization free energy of solvation -77.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds