Wall clock time and date at job start Sat Apr 11 2020 01:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46787 * 2 1 4 4 N 1.46892 * 109.47375 * 120.00369 * 2 1 3 5 5 C 1.46903 * 111.00359 * 278.20075 * 4 2 1 6 6 C 1.52994 * 109.47623 * 174.99058 * 5 4 2 7 7 C 1.50700 * 115.55227 * 151.42000 * 6 5 4 8 8 H 1.08000 * 119.99748 * 143.45408 * 7 6 5 9 9 C 1.37877 * 120.00033 * 323.45901 * 7 6 5 10 10 N 1.31513 * 119.99948 * 171.74159 * 9 7 6 11 11 Si 1.86804 * 119.99985 * 351.73703 * 9 7 6 12 12 H 1.48498 * 109.46879 * 95.66872 * 11 9 7 13 13 H 1.48491 * 109.47090 * 215.66963 * 11 9 7 14 14 H 1.48500 * 109.46856 * 335.67013 * 11 9 7 15 15 C 1.52998 * 117.49832 * 5.71434 * 6 5 4 16 16 C 1.53004 * 117.49863 * 297.09086 * 6 5 4 17 17 C 1.50697 * 109.47292 * 240.00565 * 2 1 3 18 18 C 1.38237 * 119.99760 * 286.55035 * 17 2 1 19 19 C 1.38238 * 119.99911 * 179.80863 * 18 17 2 20 20 C 1.38239 * 119.99898 * 0.41658 * 19 18 17 21 21 S 1.76200 * 119.99968 * 179.79343 * 20 19 18 22 22 C 1.81400 * 104.44717 * 270.01967 * 21 20 19 23 23 O 1.42107 * 104.27833 * 26.08888 * 21 20 19 24 24 O 1.42098 * 104.27954 * 153.94823 * 21 20 19 25 25 C 1.38234 * 119.99767 * 359.80928 * 20 19 18 26 26 C 1.38230 * 120.00304 * 0.02562 * 25 20 19 27 27 H 1.09001 * 109.47817 * 59.99422 * 1 2 3 28 28 H 1.09000 * 109.47202 * 299.99515 * 1 2 3 29 29 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.00904 * 111.00386 * 154.24834 * 4 2 1 31 31 H 1.09004 * 109.46708 * 294.99421 * 5 4 2 32 32 H 1.08999 * 109.46839 * 54.98704 * 5 4 2 33 33 H 0.97002 * 119.99652 * 179.97438 * 10 9 7 34 34 H 1.09003 * 117.50075 * 359.97438 * 15 6 5 35 35 H 1.08999 * 117.49978 * 145.02183 * 15 6 5 36 36 H 1.08997 * 117.50106 * 214.97828 * 16 6 5 37 37 H 1.09004 * 117.49684 * 359.97438 * 16 6 5 38 38 H 1.07992 * 120.00068 * 359.97438 * 18 17 2 39 39 H 1.07998 * 119.99852 * 180.20939 * 19 18 17 40 40 H 1.09006 * 109.46964 * 60.00023 * 22 21 20 41 41 H 1.09004 * 109.47155 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.47633 * 300.00140 * 22 21 20 43 43 H 1.08005 * 119.99612 * 179.97438 * 25 20 19 44 44 H 1.08002 * 119.99675 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 2.0107 0.2021 2.3644 6 6 2.4066 -0.5852 3.6151 7 6 3.0829 0.2139 4.6992 8 1 2.8834 -0.0073 5.7373 9 6 3.9562 1.2273 4.3658 10 7 4.4205 2.0290 5.2992 11 14 4.4801 1.4617 2.5881 12 1 3.6211 2.4917 1.9506 13 1 5.8974 1.9024 2.5437 14 1 4.3381 0.1770 1.8568 15 6 2.8514 -2.0366 3.4248 16 6 1.4888 -1.7298 4.0493 17 6 2.0323 -0.7103 -1.2305 18 6 1.9412 -2.0867 -1.3196 19 6 2.3984 -2.7380 -2.4500 20 6 2.9546 -2.0135 -3.4877 21 16 3.5423 -2.8440 -4.9262 22 6 5.2787 -3.2163 -4.5562 23 8 2.7761 -4.0397 -4.9782 24 8 3.4498 -1.8693 -5.9560 25 6 3.0499 -0.6374 -3.3965 26 6 2.5896 0.0141 -2.2676 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.9401 -1.0760 1.0450 31 1 2.7217 1.0130 2.2053 32 1 1.0112 0.6162 2.4969 33 1 5.0352 2.7417 5.0647 34 1 2.8617 -2.4308 2.4086 35 1 3.6335 -2.4138 4.0837 36 1 1.3744 -1.9051 5.1190 37 1 0.6027 -1.9216 3.4441 38 1 1.5104 -2.6531 -0.5072 39 1 2.3241 -3.8131 -2.5210 40 1 5.3339 -3.8487 -3.6700 41 1 5.7270 -3.7372 -5.4023 42 1 5.8187 -2.2872 -4.3736 43 1 3.4849 -0.0714 -4.2071 44 1 2.6646 1.0891 -2.1963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348388156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:00:59 Heat of formation + Delta-G solvation = 3.126360 kcal Electronic energy + Delta-G solvation = -25303.322121 eV Core-core repulsion = 21735.690217 eV Total energy + Delta-G solvation = -3567.631905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.86075 -37.80482 -37.38555 -36.23361 -35.43978 -32.28315 -31.55561 -31.22088 -29.91440 -29.15934 -26.80070 -24.85575 -23.52246 -22.87635 -21.42512 -20.42921 -19.31131 -19.02136 -18.10163 -16.98108 -16.49101 -16.39856 -15.96877 -15.64421 -15.47484 -14.82925 -14.42332 -14.05255 -13.87980 -13.65633 -13.63105 -13.57457 -13.30258 -12.96086 -12.74254 -12.62768 -12.37159 -12.26636 -12.25203 -11.88930 -11.63836 -11.51322 -11.38519 -11.16137 -11.09806 -10.71366 -10.49119 -10.34556 -9.83418 -9.50221 -9.36856 -9.23561 -9.19836 -8.90605 -8.38441 -8.00047 -6.22540 -4.16921 -0.25318 0.59930 1.12359 2.56647 3.08486 3.17672 3.19999 3.27239 3.65736 3.80887 4.21909 4.29834 4.39012 4.47352 4.54770 4.68895 4.71877 4.82457 5.14833 5.17959 5.25418 5.31994 5.33246 5.40614 5.53719 5.71669 5.75257 5.79977 5.85536 5.88539 5.94188 6.03313 6.13804 6.25236 6.28594 6.39372 6.60216 6.64650 6.65739 6.83704 7.08342 7.26619 7.30323 7.59726 7.76593 8.44884 8.82869 9.39771 10.89381 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018946 B = 0.003250 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.508122 B = 8613.752770 C = 8922.117700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.107 3.893 3 H 0.051 0.949 4 N -0.676 5.676 5 C 0.088 3.912 6 C 0.009 3.991 7 C -0.481 4.481 8 H 0.078 0.922 9 C 0.069 3.931 10 N -0.893 5.893 11 Si 0.911 3.089 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.270 1.270 15 C -0.202 4.202 16 C -0.179 4.179 17 C -0.025 4.025 18 C -0.117 4.117 19 C -0.026 4.026 20 C -0.666 4.666 21 S 2.503 3.497 22 C -0.650 4.650 23 O -0.940 6.940 24 O -0.941 6.941 25 C -0.025 4.025 26 C -0.137 4.137 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.344 0.656 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -7.975 -19.946 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.002 4.002 3 H 0.069 0.931 4 N -0.310 5.310 5 C -0.039 4.039 6 C 0.007 3.993 7 C -0.519 4.519 8 H 0.096 0.904 9 C -0.134 4.134 10 N -0.530 5.530 11 Si 0.744 3.256 12 H -0.218 1.218 13 H -0.232 1.232 14 H -0.196 1.196 15 C -0.240 4.240 16 C -0.216 4.216 17 C -0.026 4.026 18 C -0.136 4.136 19 C -0.045 4.045 20 C -0.753 4.753 21 S 2.684 3.316 22 C -0.800 4.800 23 O -0.937 6.937 24 O -0.938 6.938 25 C -0.044 4.044 26 C -0.157 4.157 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.861 -8.269 -20.460 22.146 hybrid contribution 1.507 1.148 -0.182 1.903 sum -0.353 -7.121 -20.642 21.839 Atomic orbital electron populations 1.21776 0.93049 1.02761 1.01584 1.20635 0.96657 0.95526 0.87426 0.93144 1.60920 1.31630 1.35975 1.02445 1.21855 0.99886 0.93142 0.89029 1.19296 0.99160 0.87079 0.93734 1.20475 1.24036 1.14763 0.92579 0.90372 1.25082 0.95799 0.95063 0.97408 1.69904 1.32311 1.17444 1.33306 0.86502 0.75795 0.77792 0.85466 1.21801 1.23238 1.19581 1.23058 0.97273 1.03906 0.99755 1.22663 0.93090 1.06865 0.98993 1.20417 0.92885 0.94400 0.94884 1.21266 1.00021 0.94087 0.98184 1.20970 0.92264 1.00109 0.91164 1.30419 1.18729 1.05395 1.20756 1.05002 0.77459 0.74647 0.74538 1.30228 1.24518 1.12600 1.12678 1.93584 1.66898 1.47170 1.86027 1.93578 1.86129 1.60453 1.53688 1.20856 0.94344 0.92248 0.96995 1.21241 1.00124 1.00469 0.93820 0.92769 0.91684 0.91618 0.83502 0.96038 0.90882 0.92461 0.90427 0.90620 0.90713 0.90628 0.83898 0.84111 0.84859 0.85122 0.84974 0.84242 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.30 37.15 0.35 -1.34 16 2 C 0.11 1.51 2.81 -68.87 -0.19 1.32 16 3 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 4 N -0.68 -11.13 4.71 -107.96 -0.51 -11.64 16 5 C 0.09 1.77 4.42 -3.83 -0.02 1.75 16 6 C 0.01 0.19 1.86 -155.66 -0.29 -0.10 16 7 C -0.48 -13.13 9.59 -34.44 -0.33 -13.46 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 10 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 11 Si 0.91 21.40 24.32 -169.99 -4.13 17.27 16 12 H -0.29 -6.67 6.94 56.52 0.39 -6.28 16 13 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.27 -5.84 5.31 56.52 0.30 -5.54 16 15 C -0.20 -4.07 9.39 -26.73 -0.25 -4.32 16 16 C -0.18 -3.59 9.91 -26.73 -0.26 -3.85 16 17 C -0.03 -0.32 4.66 -104.62 -0.49 -0.81 16 18 C -0.12 -1.37 9.09 -39.58 -0.36 -1.73 16 19 C -0.03 -0.27 9.47 -39.58 -0.37 -0.65 16 20 C -0.67 -6.65 5.66 -39.58 -0.22 -6.88 16 21 S 2.50 20.75 5.80 -107.50 -0.62 20.12 16 22 C -0.65 -2.95 10.80 101.05 1.09 -1.86 16 23 O -0.94 -10.65 17.13 -57.54 -0.99 -11.63 16 24 O -0.94 -10.63 17.13 -57.54 -0.99 -11.61 16 25 C -0.03 -0.27 9.47 -39.59 -0.37 -0.64 16 26 C -0.14 -1.59 9.67 -39.59 -0.38 -1.97 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.85 7.19 -51.93 -0.37 0.48 16 29 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 30 H 0.34 5.84 5.97 -39.29 -0.23 5.61 16 31 H 0.02 0.48 1.89 -51.93 -0.10 0.39 16 32 H 0.07 1.42 7.12 -51.93 -0.37 1.05 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 34 H 0.08 1.41 6.35 -51.93 -0.33 1.08 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.14 1.63 7.92 -52.49 -0.42 1.21 16 39 H 0.14 1.21 7.57 -52.49 -0.40 0.82 16 40 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.14 1.17 7.57 -52.48 -0.40 0.77 16 44 H 0.13 1.33 7.99 -52.49 -0.42 0.91 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -34.05 362.62 -9.69 -43.75 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.48 Total: 6.74 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: -2.21 Total: -32.72 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.26 Total: -37.38 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.97 Total: -23.25 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.13 Total: 17.27 kcal Atomic # 16 Polarization: 20.75 SS G_CDS: -0.62 Total: 20.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.05 -9.69 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348388156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.873 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds