Wall clock time and date at job start Sat Apr 11 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46787 * 2 1 4 4 N 1.46892 * 109.47375 * 120.00369 * 2 1 3 5 5 C 1.46903 * 111.00359 * 278.20075 * 4 2 1 6 6 C 1.52994 * 109.47623 * 174.99058 * 5 4 2 7 7 C 1.50700 * 115.55227 * 151.42000 * 6 5 4 8 8 H 1.08000 * 119.99748 * 143.45408 * 7 6 5 9 9 C 1.37877 * 120.00033 * 323.45901 * 7 6 5 10 10 N 1.31513 * 119.99948 * 171.74159 * 9 7 6 11 11 Si 1.86804 * 119.99985 * 351.73703 * 9 7 6 12 12 H 1.48498 * 109.46879 * 95.66872 * 11 9 7 13 13 H 1.48491 * 109.47090 * 215.66963 * 11 9 7 14 14 H 1.48500 * 109.46856 * 335.67013 * 11 9 7 15 15 C 1.52998 * 117.49832 * 5.71434 * 6 5 4 16 16 C 1.53004 * 117.49863 * 297.09086 * 6 5 4 17 17 C 1.50697 * 109.47292 * 240.00565 * 2 1 3 18 18 C 1.38237 * 119.99760 * 286.55035 * 17 2 1 19 19 C 1.38238 * 119.99911 * 179.80863 * 18 17 2 20 20 C 1.38239 * 119.99898 * 0.41658 * 19 18 17 21 21 S 1.76200 * 119.99968 * 179.79343 * 20 19 18 22 22 C 1.81400 * 104.44717 * 270.01967 * 21 20 19 23 23 O 1.42107 * 104.27833 * 26.08888 * 21 20 19 24 24 O 1.42098 * 104.27954 * 153.94823 * 21 20 19 25 25 C 1.38234 * 119.99767 * 359.80928 * 20 19 18 26 26 C 1.38230 * 120.00304 * 0.02562 * 25 20 19 27 27 H 1.09001 * 109.47817 * 59.99422 * 1 2 3 28 28 H 1.09000 * 109.47202 * 299.99515 * 1 2 3 29 29 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.00904 * 111.00386 * 154.24834 * 4 2 1 31 31 H 1.09004 * 109.46708 * 294.99421 * 5 4 2 32 32 H 1.08999 * 109.46839 * 54.98704 * 5 4 2 33 33 H 0.97002 * 119.99652 * 179.97438 * 10 9 7 34 34 H 1.09003 * 117.50075 * 359.97438 * 15 6 5 35 35 H 1.08999 * 117.49978 * 145.02183 * 15 6 5 36 36 H 1.08997 * 117.50106 * 214.97828 * 16 6 5 37 37 H 1.09004 * 117.49684 * 359.97438 * 16 6 5 38 38 H 1.07992 * 120.00068 * 359.97438 * 18 17 2 39 39 H 1.07998 * 119.99852 * 180.20939 * 19 18 17 40 40 H 1.09006 * 109.46964 * 60.00023 * 22 21 20 41 41 H 1.09004 * 109.47155 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.47633 * 300.00140 * 22 21 20 43 43 H 1.08005 * 119.99612 * 179.97438 * 25 20 19 44 44 H 1.08002 * 119.99675 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 2.0107 0.2021 2.3644 6 6 2.4066 -0.5852 3.6151 7 6 3.0829 0.2139 4.6992 8 1 2.8834 -0.0073 5.7373 9 6 3.9562 1.2273 4.3658 10 7 4.4205 2.0290 5.2992 11 14 4.4801 1.4617 2.5881 12 1 3.6211 2.4917 1.9506 13 1 5.8974 1.9024 2.5437 14 1 4.3381 0.1770 1.8568 15 6 2.8514 -2.0366 3.4248 16 6 1.4888 -1.7298 4.0493 17 6 2.0323 -0.7103 -1.2305 18 6 1.9412 -2.0867 -1.3196 19 6 2.3984 -2.7380 -2.4500 20 6 2.9546 -2.0135 -3.4877 21 16 3.5423 -2.8440 -4.9262 22 6 5.2787 -3.2163 -4.5562 23 8 2.7761 -4.0397 -4.9782 24 8 3.4498 -1.8693 -5.9560 25 6 3.0499 -0.6374 -3.3965 26 6 2.5896 0.0141 -2.2676 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.9401 -1.0760 1.0450 31 1 2.7217 1.0130 2.2053 32 1 1.0112 0.6162 2.4969 33 1 5.0352 2.7417 5.0647 34 1 2.8617 -2.4308 2.4086 35 1 3.6335 -2.4138 4.0837 36 1 1.3744 -1.9051 5.1190 37 1 0.6027 -1.9216 3.4441 38 1 1.5104 -2.6531 -0.5072 39 1 2.3241 -3.8131 -2.5210 40 1 5.3339 -3.8487 -3.6700 41 1 5.7270 -3.7372 -5.4023 42 1 5.8187 -2.2872 -4.3736 43 1 3.4849 -0.0714 -4.2071 44 1 2.6646 1.0891 -2.1963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348388156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:00:58 Heat of formation + Delta-G solvation = -21.120493 kcal Electronic energy + Delta-G solvation = -25304.373544 eV Core-core repulsion = 21735.690217 eV Total energy + Delta-G solvation = -3568.683327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77354 -39.27902 -38.12046 -36.99301 -36.68932 -34.37042 -32.64766 -32.03307 -30.42956 -30.04360 -28.60459 -26.33939 -24.57387 -23.75957 -23.00959 -21.49569 -20.87530 -20.00193 -18.92492 -18.49430 -17.72201 -17.23398 -17.12860 -16.98706 -16.35288 -15.75440 -15.45209 -15.35913 -15.20515 -14.82618 -14.61296 -14.35359 -14.24523 -14.07708 -13.92940 -13.63815 -13.55843 -13.14807 -13.12465 -13.02439 -12.97886 -12.73915 -12.50706 -12.31739 -12.11966 -11.97361 -11.92548 -11.60194 -11.50032 -11.32643 -11.18588 -10.64478 -10.28387 -10.16672 -10.01860 -9.41590 -8.35703 -6.34977 -0.84177 -0.21350 0.31889 1.19992 1.29789 1.41552 1.93854 2.25086 2.40597 2.83851 3.04584 3.14148 3.21188 3.49455 3.57265 3.79362 3.96444 4.11494 4.12303 4.14648 4.20982 4.26486 4.35722 4.41699 4.53596 4.54042 4.61231 4.71660 4.78647 4.89753 4.93705 4.98439 4.98984 5.03608 5.09224 5.15514 5.20348 5.28079 5.43568 5.46291 5.63846 5.67500 5.84400 5.96546 6.31613 6.33170 6.69233 7.25245 8.79940 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018946 B = 0.003250 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.508122 B = 8613.752770 C = 8922.117700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.108 3.892 3 H 0.044 0.956 4 N -0.666 5.666 5 C 0.099 3.901 6 C -0.019 4.019 7 C -0.491 4.491 8 H 0.030 0.970 9 C 0.010 3.990 10 N -0.947 5.947 11 Si 0.980 3.020 12 H -0.282 1.282 13 H -0.312 1.312 14 H -0.241 1.241 15 C -0.183 4.183 16 C -0.165 4.165 17 C -0.041 4.041 18 C -0.123 4.123 19 C -0.032 4.032 20 C -0.665 4.665 21 S 2.514 3.486 22 C -0.628 4.628 23 O -0.975 6.975 24 O -0.976 6.976 25 C -0.032 4.032 26 C -0.146 4.146 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.344 0.656 31 H 0.005 0.995 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 -9.505 -23.132 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.001 4.001 3 H 0.062 0.938 4 N -0.299 5.299 5 C -0.030 4.030 6 C -0.021 4.021 7 C -0.529 4.529 8 H 0.048 0.952 9 C -0.187 4.187 10 N -0.586 5.586 11 Si 0.810 3.190 12 H -0.210 1.210 13 H -0.242 1.242 14 H -0.165 1.165 15 C -0.221 4.221 16 C -0.202 4.202 17 C -0.042 4.042 18 C -0.142 4.142 19 C -0.051 4.051 20 C -0.751 4.751 21 S 2.697 3.303 22 C -0.782 4.782 23 O -0.972 6.972 24 O -0.973 6.973 25 C -0.050 4.050 26 C -0.165 4.165 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.022 0.978 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.424 -9.814 -23.651 25.646 hybrid contribution 1.350 1.548 0.870 2.230 sum -0.074 -8.266 -22.781 24.235 Atomic orbital electron populations 1.21748 0.92079 1.03096 1.01872 1.20659 0.97421 0.95079 0.86987 0.93847 1.60835 1.31451 1.35180 1.02414 1.21576 0.99418 0.92607 0.89351 1.19210 1.01006 0.87826 0.94008 1.20706 1.24501 1.15574 0.92082 0.95165 1.25966 0.95756 0.94677 1.02274 1.70064 1.33784 1.18705 1.36029 0.85376 0.74539 0.79115 0.79936 1.20991 1.24159 1.16465 1.23027 0.96830 1.01148 1.01058 1.22682 0.94028 1.04620 0.98892 1.20303 0.94379 0.94787 0.94685 1.21340 1.00270 0.93838 0.98771 1.21202 0.91933 1.01051 0.90892 1.30693 1.18047 1.05472 1.20887 1.04646 0.79047 0.73238 0.73391 1.30059 1.19408 1.14229 1.14489 1.93539 1.69514 1.47907 1.86262 1.93533 1.87509 1.61391 1.54914 1.21114 0.94152 0.92636 0.97129 1.21424 1.00042 1.01113 0.93971 0.91365 0.92527 0.91237 0.83596 0.97772 0.90583 0.92458 0.87473 0.91824 0.91858 0.88113 0.83722 0.82546 0.83061 0.82840 0.83146 0.82569 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.30 71.98 0.67 -2.30 16 2 C 0.11 2.76 2.81 44.17 0.12 2.89 16 3 H 0.04 1.19 7.70 -2.38 -0.02 1.18 16 4 N -0.67 -19.99 4.71 -495.48 -2.34 -22.33 16 5 C 0.10 3.78 4.42 86.30 0.38 4.16 16 6 C -0.02 -0.85 1.86 -52.93 -0.10 -0.95 16 7 C -0.49 -27.66 9.59 25.60 0.25 -27.41 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 9 C 0.01 0.60 5.45 84.65 0.46 1.06 16 10 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 11 Si 0.98 44.45 24.32 68.60 1.67 46.12 16 12 H -0.28 -12.34 6.94 99.48 0.69 -11.65 16 13 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 14 H -0.24 -9.56 5.31 99.48 0.53 -9.04 16 15 C -0.18 -6.99 9.39 30.60 0.29 -6.71 16 16 C -0.17 -6.38 9.91 30.60 0.30 -6.07 16 17 C -0.04 -0.93 4.66 -19.87 -0.09 -1.02 16 18 C -0.12 -2.56 9.09 22.27 0.20 -2.36 16 19 C -0.03 -0.59 9.47 22.27 0.21 -0.38 16 20 C -0.67 -11.52 5.66 22.27 0.13 -11.40 16 21 S 2.51 35.40 5.80 -56.49 -0.33 35.07 16 22 C -0.63 -2.85 10.80 113.37 1.22 -1.63 16 23 O -0.97 -20.32 17.13 -127.65 -2.19 -22.51 16 24 O -0.98 -20.27 17.13 -127.65 -2.19 -22.46 16 25 C -0.03 -0.57 9.47 22.27 0.21 -0.36 16 26 C -0.15 -3.01 9.67 22.27 0.22 -2.79 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.37 7.19 -2.39 -0.02 1.36 16 29 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 30 H 0.34 10.42 5.97 -89.69 -0.54 9.89 16 31 H 0.01 0.21 1.89 -2.39 0.00 0.21 16 32 H 0.08 2.84 7.12 -2.39 -0.02 2.82 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.11 3.48 6.35 -2.39 -0.02 3.47 16 35 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.15 2.88 7.92 -2.91 -0.02 2.86 16 39 H 0.16 2.27 7.57 -2.91 -0.02 2.25 16 40 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.16 2.21 7.57 -2.91 -0.02 2.19 16 44 H 0.14 2.50 7.99 -2.91 -0.02 2.47 16 Total: -1.00 -76.49 362.62 -0.32 -76.81 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.28 Total: 22.82 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 4.47 Total: -55.27 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.04 Total: -80.58 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -4.37 Total: -44.96 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.12 kcal Atomic # 16 Polarization: 35.40 SS G_CDS: -0.33 Total: 35.07 kcal Total: -76.49 -0.32 -76.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348388156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.690 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds