Wall clock time and date at job start Sat Apr 11 2020 01:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.36008 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38714 * 119.96999 * 359.72208 * 4 3 2 6 6 C 1.38090 * 120.01680 * 179.76658 * 5 4 3 7 7 C 1.38919 * 119.97730 * 0.53152 * 6 5 4 8 8 S 1.76199 * 120.02524 * 179.69958 * 7 6 5 9 9 C 1.81401 * 102.99973 * 0.02562 * 8 7 6 10 10 C 1.50707 * 109.46860 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00133 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99866 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00261 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47310 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47081 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46855 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00124 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99674 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00157 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47077 * 89.99874 * 20 18 16 22 22 H 1.48499 * 109.47010 * 210.00263 * 20 18 16 23 23 H 1.48498 * 109.46742 * 329.99916 * 20 18 16 24 24 C 1.38921 * 119.95119 * 359.72030 * 7 6 5 25 25 C 1.38086 * 119.97064 * 0.02562 * 24 7 6 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07994 * 119.99002 * 0.02562 * 5 4 3 32 32 H 1.08004 * 120.01237 * 180.25620 * 6 5 4 33 33 H 1.08997 * 109.47003 * 299.99690 * 9 8 7 34 34 H 1.08998 * 109.46751 * 60.00292 * 9 8 7 35 35 H 0.97007 * 119.99527 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47173 * 300.00175 * 13 12 10 37 37 H 1.09004 * 109.46888 * 59.99944 * 13 12 10 38 38 H 1.09002 * 109.47252 * 300.00257 * 14 13 12 39 39 H 1.08996 * 109.47230 * 59.99916 * 14 13 12 40 40 H 1.08997 * 109.46897 * 299.99608 * 15 14 13 41 41 H 1.08998 * 109.47196 * 60.00418 * 15 14 13 42 42 H 0.96994 * 119.99987 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.01352 * 179.97438 * 24 7 6 44 44 H 1.08005 * 119.98124 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.1991 0.4252 0.0069 6 6 5.5682 0.6051 0.0026 7 6 6.0997 1.8886 0.0030 8 16 7.8465 2.1195 0.0055 9 6 8.4827 0.4207 0.0061 10 6 9.9895 0.4487 0.0076 11 8 10.5763 1.5100 0.0087 12 7 10.6849 -0.7058 0.0077 13 6 12.1496 -0.6788 0.0086 14 6 12.6862 -2.1115 0.0092 15 6 14.2160 -2.0832 0.0107 16 6 14.7445 -3.4945 0.0107 17 1 14.0579 -4.3283 0.0100 18 6 16.1045 -3.7213 0.0114 19 7 16.9404 -2.7061 0.0117 20 14 16.7596 -5.4707 0.0121 21 1 16.9340 -5.9345 -1.3878 22 1 18.0683 -5.5088 0.7129 23 1 15.7974 -6.3593 0.7118 24 6 5.2529 2.9899 0.0020 25 6 3.8841 2.8076 0.0010 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7857 -0.5725 0.0110 32 1 6.2256 -0.2518 0.0033 33 1 8.1277 -0.0999 0.8955 34 1 8.1302 -0.0995 -0.8845 35 1 10.2154 -1.5547 0.0064 36 1 12.5039 -0.1580 -0.8811 37 1 12.5028 -0.1585 0.8989 38 1 12.3319 -2.6319 0.8990 39 1 12.3330 -2.6322 -0.8809 40 1 14.5706 -1.5628 -0.8789 41 1 14.5688 -1.5628 0.9011 42 1 17.8972 -2.8656 0.0118 43 1 5.6650 3.9882 0.0027 44 1 3.2256 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349298339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:01:05 Heat of formation + Delta-G solvation = -68.001485 kcal Electronic energy + Delta-G solvation = -22714.064808 eV Core-core repulsion = 19143.348568 eV Total energy + Delta-G solvation = -3570.716239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.47085 -39.56874 -37.86857 -35.53069 -33.41477 -32.56863 -31.77714 -31.34618 -30.24204 -29.61572 -26.53474 -24.59192 -23.17332 -22.99424 -22.10643 -20.88288 -20.17514 -18.82263 -17.84844 -16.93024 -16.57147 -16.56032 -16.27150 -15.89628 -15.62939 -15.01105 -14.77722 -14.51965 -14.45819 -13.94763 -13.91965 -13.90805 -13.40496 -13.13868 -13.08907 -12.57399 -12.37379 -12.29177 -12.21352 -11.85987 -11.74408 -11.35054 -11.26570 -10.93730 -10.79801 -10.63445 -10.41137 -10.08999 -9.92737 -9.51835 -9.46293 -9.37039 -9.16348 -8.92438 -8.40486 -7.44002 -6.04944 -4.08424 0.89529 0.90468 1.09596 2.15105 2.54450 2.74874 3.22957 3.28034 3.28453 3.35111 3.37668 4.28433 4.39862 4.40894 4.41321 4.53131 4.58591 4.64845 4.70850 4.81752 4.87100 4.92851 5.08328 5.24291 5.26114 5.30893 5.48605 5.54297 5.62329 5.65447 5.70084 5.88715 5.90873 6.08552 6.25549 6.34276 6.52539 6.73114 6.93444 6.97136 7.49793 7.59374 7.71390 7.93210 8.16921 8.34134 8.98106 9.56023 11.06276 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.001640 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.972699 B =17070.009509 C =18228.324751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.122 3.878 5 C -0.188 4.188 6 C -0.096 4.096 7 C -0.135 4.135 8 S -0.031 6.031 9 C -0.152 4.152 10 C 0.525 3.475 11 O -0.524 6.524 12 N -0.719 5.719 13 C 0.117 3.883 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.059 4.059 25 C -0.132 4.132 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.136 0.864 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.982 6.514 -0.023 33.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.231 6.231 4 C 0.074 3.926 5 C -0.208 4.208 6 C -0.120 4.120 7 C -0.248 4.248 8 S 0.212 5.788 9 C -0.303 4.303 10 C 0.309 3.691 11 O -0.400 6.400 12 N -0.371 5.371 13 C -0.006 4.006 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.083 4.083 25 C -0.152 4.152 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.154 0.846 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -31.726 8.445 -0.015 32.831 hybrid contribution -0.476 -2.993 -0.013 3.030 sum -32.201 5.452 -0.028 32.660 Atomic orbital electron populations 1.21779 0.92619 1.02967 1.03585 1.22800 0.95988 0.81920 1.01466 1.86096 1.18908 1.29361 1.88711 1.18965 0.82299 0.94103 0.97236 1.21138 0.93795 0.98209 1.07692 1.20985 0.95077 0.95617 1.00317 1.22009 0.98823 0.96259 1.07703 1.86258 0.93792 1.06482 1.92239 1.23841 0.97911 1.00993 1.07600 1.19510 0.87467 0.84825 0.77335 1.90763 1.70583 1.29757 1.48896 1.46107 1.08703 1.07760 1.74500 1.21721 0.76513 1.00052 1.02304 1.21899 1.00806 0.92247 1.00933 1.19035 0.87217 0.97433 0.97737 1.21193 0.91607 0.92301 1.51149 0.92650 1.25027 0.97151 0.97013 0.95216 1.69960 1.02603 1.30200 1.50400 0.86579 0.78366 0.84845 0.78106 1.20646 1.21169 1.19917 1.20561 0.91530 0.97978 0.98206 1.20363 0.94634 0.95004 1.05208 0.90290 0.91468 0.91463 0.91974 0.91977 0.85228 0.85615 0.86648 0.86653 0.76635 0.91481 0.91483 0.92661 0.92662 0.96215 0.96206 0.92883 0.84585 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 10.28 37.16 0.38 -0.21 16 2 C 0.05 0.29 5.46 37.16 0.20 0.49 16 3 O -0.32 -2.66 10.14 -19.77 -0.20 -2.87 16 4 C 0.12 1.08 6.69 -39.23 -0.26 0.82 16 5 C -0.19 -1.53 9.03 -39.46 -0.36 -1.88 16 6 C -0.10 -0.83 9.36 -39.38 -0.37 -1.20 16 7 C -0.14 -1.34 6.11 -39.08 -0.24 -1.58 16 8 S -0.03 -0.35 21.06 -107.50 -2.26 -2.62 16 9 C -0.15 -1.49 4.81 36.01 0.17 -1.31 16 10 C 0.53 7.30 7.85 -10.98 -0.09 7.21 16 11 O -0.52 -9.57 15.86 5.56 0.09 -9.48 16 12 N -0.72 -9.50 5.56 -60.30 -0.33 -9.83 16 13 C 0.12 1.97 5.67 -4.05 -0.02 1.94 16 14 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.06 -0.54 9.79 -39.38 -0.39 -0.93 16 25 C -0.13 -1.14 9.98 -39.47 -0.39 -1.53 16 26 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 31 H 0.13 0.77 6.29 -52.49 -0.33 0.44 16 32 H 0.13 0.85 5.87 -52.48 -0.31 0.55 16 33 H 0.12 0.87 7.74 -51.93 -0.40 0.46 16 34 H 0.12 0.87 7.75 -51.92 -0.40 0.46 16 35 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -33.53 383.48 -10.04 -43.57 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.78 Total: -1.59 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.05 Total: -13.37 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.40 Total: -35.65 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.11 Total: -12.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.26 Total: -2.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.53 -10.04 -43.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349298339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.431 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds