Wall clock time and date at job start Sat Apr 11 2020 01:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.60507 * 2 1 4 4 C 1.53182 * 109.60242 * 239.67219 * 2 1 3 5 5 N 1.46475 * 109.90084 * 177.44606 * 4 2 1 6 6 C 1.46896 * 110.99936 * 197.00338 * 5 4 2 7 7 C 1.50698 * 109.46968 * 170.00237 * 6 5 4 8 8 C 1.38635 * 119.75492 * 89.99839 * 7 6 5 9 9 C 1.37611 * 120.25212 * 179.97438 * 8 7 6 10 10 C 1.40717 * 119.74429 * 359.97438 * 9 8 7 11 11 C 1.41393 * 120.24544 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00167 * 334.84990 * 11 10 9 13 13 C 1.39947 * 120.00447 * 154.85088 * 11 10 9 14 14 N 1.30829 * 119.99580 * 334.27844 * 13 11 10 15 15 Si 1.86794 * 120.00413 * 154.27772 * 13 11 10 16 16 H 1.48504 * 109.47556 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47307 * 60.00117 * 15 13 11 18 18 H 1.48499 * 109.47060 * 300.00218 * 15 13 11 19 19 C 1.40717 * 119.51251 * 0.27207 * 10 9 8 20 20 C 1.37622 * 119.74258 * 359.45159 * 19 10 9 21 21 C 1.46470 * 112.46222 * 71.96321 * 5 4 2 22 22 C 1.53184 * 109.89796 * 288.03771 * 21 5 4 23 23 H 1.08998 * 109.73834 * 302.79556 * 22 21 5 24 24 C 1.53004 * 109.59944 * 182.39309 * 22 21 5 25 25 S 1.81818 * 109.73367 * 120.40379 * 2 1 3 26 26 O 1.42100 * 108.70290 * 286.40600 * 25 2 1 27 27 O 1.42097 * 108.70401 * 57.89992 * 25 2 1 28 28 H 1.08994 * 109.47077 * 180.32291 * 1 2 3 29 29 H 1.08999 * 109.47201 * 300.32769 * 1 2 3 30 30 H 1.09001 * 109.46681 * 60.32602 * 1 2 3 31 31 H 1.08999 * 109.39780 * 57.31798 * 4 2 1 32 32 H 1.08996 * 109.33126 * 297.53651 * 4 2 1 33 33 H 1.08998 * 109.47591 * 49.99638 * 6 5 4 34 34 H 1.09008 * 109.47003 * 289.99659 * 6 5 4 35 35 H 1.07996 * 119.87152 * 359.95194 * 8 7 6 36 36 H 1.07999 * 120.13162 * 179.97438 * 9 8 7 37 37 H 0.96996 * 120.00212 * 354.29995 * 14 13 11 38 38 H 1.07998 * 120.12873 * 179.72603 * 19 10 9 39 39 H 1.07997 * 119.87625 * 180.27232 * 20 19 10 40 40 H 1.08997 * 109.39604 * 48.17065 * 21 5 4 41 41 H 1.08994 * 109.39733 * 167.90699 * 21 5 4 42 42 H 1.08996 * 109.46992 * 300.81230 * 24 22 21 43 43 H 1.09007 * 109.47093 * 60.81003 * 24 22 21 44 44 H 1.08993 * 109.47190 * 180.80926 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0439 -0.7287 -1.2456 5 7 3.5074 -0.6798 -1.2835 6 6 4.0101 -0.9987 -2.6265 7 6 5.4860 -0.7022 -2.6938 8 6 6.4020 -1.6902 -2.3671 9 6 7.7521 -1.4307 -2.4256 10 6 8.2018 -0.1568 -2.8194 11 6 9.5866 0.1212 -2.8836 12 1 10.2794 -0.4433 -2.2773 13 6 10.0596 1.1279 -3.7329 14 7 9.3746 1.4619 -4.7963 15 14 11.6689 1.9948 -3.3483 16 1 11.9451 3.0128 -4.3936 17 1 12.7721 1.0012 -3.3207 18 1 11.5687 2.6600 -2.0244 19 6 7.2630 0.8400 -3.1437 20 6 5.9177 0.5563 -3.0836 21 6 4.1226 -1.5441 -0.2737 22 6 3.9254 -0.9397 1.1200 23 1 4.3458 0.0656 1.1481 24 6 4.6215 -1.8165 2.1629 25 16 2.1439 -0.8661 1.4760 26 8 1.9399 -0.0345 2.6101 27 8 1.6245 -2.1888 1.4772 28 1 -0.3633 -1.0276 0.0058 29 1 -0.3633 0.5189 0.8870 30 1 -0.3633 0.5088 -0.8929 31 1 1.6424 -0.2480 -2.1376 32 1 1.7170 -1.7680 -1.2161 33 1 3.4838 -0.3937 -3.3647 34 1 3.8418 -2.0552 -2.8360 35 1 6.0545 -2.6672 -2.0652 36 1 8.4639 -2.2018 -2.1702 37 1 8.5832 0.9576 -5.0416 38 1 7.5970 1.8225 -3.4429 39 1 5.1954 1.3184 -3.3363 40 1 3.6588 -2.5298 -0.3098 41 1 5.1886 -1.6392 -0.4795 42 1 4.2035 -2.8226 2.1290 43 1 5.6892 -1.8592 1.9474 44 1 4.4677 -1.3924 3.1551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352622215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:01:15 Heat of formation + Delta-G solvation = -78.218245 kcal Electronic energy + Delta-G solvation = -25753.668950 eV Core-core repulsion = 22182.509678 eV Total energy + Delta-G solvation = -3571.159271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35113 -39.02041 -38.03451 -37.18118 -35.99924 -35.45894 -34.03051 -31.75052 -31.19135 -28.59241 -27.93000 -26.37051 -24.54581 -23.20624 -22.78282 -22.50704 -21.54733 -19.85071 -19.80977 -17.93991 -17.88901 -17.07338 -16.84385 -16.55148 -16.29032 -16.08680 -15.76543 -15.39755 -15.11103 -14.78203 -14.28087 -14.21269 -13.98115 -13.93659 -13.86605 -13.68230 -13.41648 -13.25532 -13.18718 -13.09551 -12.99337 -12.84591 -12.66543 -12.58927 -12.32297 -12.21252 -12.04386 -11.96179 -11.53043 -11.43424 -11.26886 -10.89253 -10.84668 -9.55602 -9.50207 -9.28787 -9.12901 -6.43452 -1.03368 0.88190 0.99006 1.49996 1.61652 1.64274 1.78636 2.32885 2.48543 2.55217 2.79058 3.04406 3.36524 3.56483 3.62036 3.66093 3.91694 3.96627 4.04415 4.24317 4.26811 4.37845 4.45366 4.50173 4.50891 4.60304 4.64589 4.72622 4.77116 4.82242 4.88001 4.91048 4.92171 5.04255 5.11422 5.15837 5.26837 5.46680 5.75673 5.81207 5.83595 5.88391 6.05610 6.16227 6.29708 6.44894 6.82922 6.96823 8.05914 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.003103 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.719892 B = 9022.731271 C = 9403.570953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.541 4.541 3 H 0.158 0.842 4 C 0.064 3.936 5 N -0.559 5.559 6 C 0.129 3.871 7 C -0.202 4.202 8 C -0.071 4.071 9 C -0.245 4.245 10 C 0.071 3.929 11 C -0.565 4.565 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.819 5.819 15 Si 1.113 2.887 16 H -0.271 1.271 17 H -0.259 1.259 18 H -0.266 1.266 19 C -0.241 4.241 20 C -0.062 4.062 21 C 0.060 3.940 22 C -0.549 4.549 23 H 0.147 0.853 24 C -0.149 4.149 25 S 2.407 3.593 26 O -0.978 6.978 27 O -0.964 6.964 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.284 0.716 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.390 -3.148 6.644 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.654 4.654 3 H 0.176 0.824 4 C -0.064 4.064 5 N -0.283 5.283 6 C 0.003 3.997 7 C -0.203 4.203 8 C -0.090 4.090 9 C -0.265 4.265 10 C 0.069 3.931 11 C -0.593 4.593 12 H 0.085 0.915 13 C -0.211 4.211 14 N -0.442 5.442 15 Si 0.931 3.069 16 H -0.196 1.196 17 H -0.183 1.183 18 H -0.190 1.190 19 C -0.260 4.260 20 C -0.081 4.081 21 C -0.069 4.069 22 C -0.660 4.660 23 H 0.165 0.835 24 C -0.207 4.207 25 S 2.594 3.406 26 O -0.975 6.975 27 O -0.962 6.962 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.787 -1.811 6.950 15.546 hybrid contribution -0.350 -1.592 -0.295 1.656 sum -14.137 -3.403 6.655 15.992 Atomic orbital electron populations 1.21725 0.88357 1.04544 1.05887 1.29881 1.07169 1.14061 1.14308 0.82441 1.22032 0.86676 0.99837 0.97876 1.61180 1.05907 1.55410 1.05794 1.20677 0.91068 0.99594 0.88343 1.19244 0.94545 0.94467 1.12073 1.20744 0.92369 0.98084 0.97780 1.21087 0.95673 0.95991 1.13736 1.17979 0.93678 0.91531 0.89920 1.20766 0.93598 1.20001 1.24976 0.91492 1.28316 1.06907 0.94723 0.91109 1.70572 1.16138 1.37257 1.20283 0.83051 0.70297 0.76284 0.77312 1.19554 1.18340 1.19049 1.21104 0.93845 0.98040 1.13024 1.20706 0.94094 0.96227 0.97090 1.21997 1.03738 0.93736 0.87407 1.29934 1.22683 1.10001 1.03418 0.83507 1.21692 1.03142 0.99217 0.96651 1.08497 0.78785 0.75521 0.77846 1.93517 1.85171 1.69765 1.49059 1.93506 1.77871 1.37280 1.87506 0.90619 0.90647 0.87478 0.86202 0.92020 0.88937 0.93308 0.86404 0.89084 0.90422 0.89985 0.87050 0.92123 0.88454 0.90340 0.89340 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.21 71.98 0.66 -1.30 16 2 C -0.54 -9.20 3.22 30.66 0.10 -9.11 16 3 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.06 1.12 4.70 86.45 0.41 1.52 16 5 N -0.56 -13.03 4.42 -902.36 -3.99 -17.02 16 6 C 0.13 3.34 5.12 85.56 0.44 3.78 16 7 C -0.20 -7.26 4.91 -19.67 -0.10 -7.36 16 8 C -0.07 -2.74 7.74 22.22 0.17 -2.57 16 9 C -0.25 -11.40 9.80 22.73 0.22 -11.18 16 10 C 0.07 3.73 5.30 -21.29 -0.11 3.62 16 11 C -0.56 -30.45 8.98 23.46 0.21 -30.24 16 12 H 0.07 3.55 7.96 -2.91 -0.02 3.53 16 13 C 0.01 0.28 4.93 85.26 0.42 0.70 16 14 N -0.82 -44.12 12.32 21.83 0.27 -43.85 16 15 Si 1.11 43.26 30.00 68.60 2.06 45.32 16 16 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 17 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 C -0.24 -11.97 7.96 22.73 0.18 -11.79 16 20 C -0.06 -2.58 9.67 22.22 0.21 -2.37 16 21 C 0.06 1.46 4.53 86.45 0.39 1.85 16 22 C -0.55 -12.46 3.23 30.66 0.10 -12.36 16 23 H 0.15 3.27 8.14 -2.39 -0.02 3.26 16 24 C -0.15 -3.12 9.19 71.98 0.66 -2.46 16 25 S 2.41 55.59 4.13 -56.49 -0.23 55.36 16 26 O -0.98 -28.51 18.11 -127.41 -2.31 -30.81 16 27 O -0.96 -26.44 18.02 -127.41 -2.30 -28.73 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.12 1.61 7.77 -2.39 -0.02 1.59 16 32 H 0.06 1.02 7.93 -2.39 -0.02 1.00 16 33 H 0.09 2.11 7.78 -2.39 -0.02 2.09 16 34 H 0.05 1.15 8.08 -2.38 -0.02 1.13 16 35 H 0.12 3.78 7.75 -2.91 -0.02 3.76 16 36 H 0.09 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.28 15.80 6.70 -92.71 -0.62 15.18 16 38 H 0.08 4.38 6.50 -2.91 -0.02 4.36 16 39 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.06 1.34 7.93 -2.39 -0.02 1.32 16 41 H 0.10 2.76 4.98 -2.39 -0.01 2.74 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.77 361.44 -1.40 -68.17 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 1.13 Total: 30.82 kcal Atomic # 6 Polarization: -83.22 SS G_CDS: 3.97 Total: -79.25 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -3.72 Total: -60.87 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -4.60 Total: -59.55 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.06 Total: 45.32 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.23 Total: 55.36 kcal Total: -66.77 -1.40 -68.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352622215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.051 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds