Wall clock time and date at job start Sat Apr 11 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29508 * 121.53169 * 2 1 4 4 S 1.69489 * 107.84595 * 179.97438 * 3 2 1 5 5 C 1.72018 * 96.02460 * 359.82964 * 4 3 2 6 6 C 1.50696 * 127.31889 * 180.22298 * 5 4 3 7 7 C 1.37906 * 105.36373 * 0.28362 * 5 4 3 8 8 C 1.47339 * 123.08472 * 179.97438 * 7 5 4 9 9 O 1.21612 * 119.99926 * 269.42626 * 8 7 5 10 10 N 1.34782 * 120.00018 * 89.70392 * 8 7 5 11 11 C 1.46501 * 119.99878 * 179.72213 * 10 8 7 12 12 H 1.09006 * 109.49520 * 34.99816 * 11 10 8 13 13 C 1.53192 * 109.50005 * 274.93899 * 11 10 8 14 14 N 1.46933 * 108.77167 * 185.44462 * 13 11 10 15 15 C 1.36937 * 120.60423 * 233.57228 * 14 13 11 16 16 H 1.08001 * 120.00038 * 27.66707 * 15 14 13 17 17 C 1.38806 * 119.99791 * 207.66056 * 15 14 13 18 18 N 1.31621 * 120.00298 * 17.36387 * 17 15 14 19 19 Si 1.86804 * 119.99950 * 197.36400 * 17 15 14 20 20 H 1.48493 * 109.47268 * 90.00007 * 19 17 15 21 21 H 1.48498 * 109.47218 * 210.00266 * 19 17 15 22 22 H 1.48501 * 109.46674 * 330.00038 * 19 17 15 23 23 C 1.46921 * 118.76096 * 53.55771 * 14 13 11 24 24 C 1.53191 * 108.77905 * 306.40596 * 23 14 13 25 25 C 1.53033 * 109.49870 * 155.06556 * 11 10 8 26 26 H 1.09005 * 109.45824 * 61.29607 * 25 11 10 27 27 C 1.53004 * 109.45950 * 301.33994 * 25 11 10 28 28 H 1.09001 * 109.47158 * 270.02602 * 1 2 3 29 29 H 1.09000 * 109.47311 * 30.02369 * 1 2 3 30 30 H 1.08997 * 109.47398 * 150.02381 * 1 2 3 31 31 H 1.09005 * 109.46888 * 270.07598 * 6 5 4 32 32 H 1.08999 * 109.47630 * 30.07213 * 6 5 4 33 33 H 1.08997 * 109.47352 * 150.07897 * 6 5 4 34 34 H 0.96993 * 119.99770 * 359.72491 * 10 8 7 35 35 H 1.09007 * 109.58392 * 305.20169 * 13 11 10 36 36 H 1.09005 * 109.58789 * 65.62574 * 13 11 10 37 37 H 0.97002 * 120.00260 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.58716 * 186.62282 * 23 14 13 39 39 H 1.09003 * 109.71046 * 66.26759 * 23 14 13 40 40 H 1.08998 * 109.49543 * 294.69037 * 24 23 14 41 41 H 1.08997 * 109.50042 * 174.58700 * 24 23 14 42 42 H 1.08998 * 109.47054 * 60.00134 * 27 25 11 43 43 H 1.09002 * 109.47302 * 179.97438 * 27 25 11 44 44 H 1.09000 * 109.47245 * 299.99487 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1039 0.0000 4 16 3.8310 0.7029 0.0007 5 6 3.6017 -1.0020 0.0061 6 6 4.6676 -2.0671 0.0138 7 6 2.2351 -1.1868 0.0006 8 6 1.6035 -2.5180 0.0021 9 8 1.3381 -3.0663 -1.0504 10 7 1.3148 -3.1255 1.1701 11 6 0.6813 -4.4465 1.1717 12 1 1.0534 -5.0294 0.3291 13 6 -0.8373 -4.2854 1.0509 14 7 -1.4652 -5.6070 1.1853 15 6 -2.3328 -6.0670 0.2310 16 1 -2.2423 -5.7269 -0.7901 17 6 -3.3284 -6.9706 0.5759 18 7 -3.6661 -7.1277 1.8383 19 14 -4.1892 -7.9638 -0.7517 20 1 -3.4558 -9.2361 -0.9719 21 1 -5.5797 -8.2615 -0.3239 22 1 -4.2162 -7.1830 -2.0146 23 6 -1.1444 -6.4256 2.3625 24 6 0.3777 -6.5628 2.4678 25 6 1.0118 -5.1699 2.4790 26 1 0.6182 -4.5986 3.3198 27 6 2.5297 -5.3020 2.6189 28 1 -0.3633 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 4.9292 -2.3267 -1.0121 32 1 5.5515 -1.6931 0.5305 33 1 4.2933 -2.9521 0.5283 34 1 1.5265 -2.6881 2.0096 35 1 -1.1990 -3.6274 1.8411 36 1 -1.0835 -3.8607 0.0776 37 1 -4.3621 -7.7589 2.0793 38 1 -1.5936 -7.4128 2.2545 39 1 -1.5309 -5.9447 3.2611 40 1 0.7522 -7.1261 1.6131 41 1 0.6330 -7.0862 3.3892 42 1 2.9814 -4.3101 2.6282 43 1 2.7654 -5.8169 3.5503 44 1 2.9237 -5.8728 1.7781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968688939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:01:31 Heat of formation + Delta-G solvation = 10.737545 kcal Electronic energy + Delta-G solvation = -25971.595276 eV Core-core repulsion = 22436.586169 eV Total energy + Delta-G solvation = -3535.009108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42475 -38.73336 -37.38749 -34.50086 -33.55142 -32.97549 -31.11793 -29.97397 -29.14207 -28.14941 -27.24358 -24.21822 -23.43689 -22.09570 -21.20214 -20.89741 -19.78136 -18.88928 -18.32860 -16.84438 -16.72578 -15.89915 -15.01007 -14.85434 -14.58829 -14.46936 -13.92913 -13.81954 -13.65595 -13.57043 -13.46109 -13.24510 -13.04615 -12.81574 -12.49842 -12.38268 -12.32977 -12.06562 -11.68478 -11.53936 -11.37840 -11.07008 -10.89083 -10.82257 -10.67752 -10.29146 -10.16862 -10.04032 -9.89353 -9.67412 -9.57698 -9.52365 -8.86254 -8.83526 -8.41309 -6.69016 -5.78967 -3.21173 0.33975 1.12964 1.54072 1.98638 2.65890 3.38029 3.40273 3.47048 3.49738 4.11928 4.51254 4.65570 4.79397 4.96033 5.07514 5.13678 5.16841 5.24650 5.33005 5.35320 5.43805 5.44491 5.50501 5.58247 5.63504 5.84865 5.92056 5.94882 6.02366 6.13215 6.18601 6.24469 6.41366 6.51943 6.59529 6.63043 6.69614 6.80099 6.95685 7.33725 7.63640 7.64801 7.82967 8.31298 8.45542 9.21573 9.83760 10.38953 11.29691 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.003461 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.058360 B = 8087.089686 C = 8875.258263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.157 3.843 3 N -0.467 5.467 4 S 0.266 5.734 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.210 4.210 8 C 0.586 3.414 9 O -0.521 6.521 10 N -0.709 5.709 11 C 0.132 3.868 12 H 0.088 0.912 13 C 0.142 3.858 14 N -0.587 5.587 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.167 3.833 24 C -0.133 4.133 25 C -0.091 4.091 26 H 0.067 0.933 27 C -0.144 4.144 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.396 0.604 35 H 0.018 0.982 36 H 0.058 0.942 37 H 0.253 0.747 38 H 0.089 0.911 39 H 0.019 0.981 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 11.572 2.136 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.020 4.020 3 N -0.288 5.288 4 S 0.422 5.578 5 C -0.266 4.266 6 C -0.144 4.144 7 C -0.231 4.231 8 C 0.368 3.632 9 O -0.397 6.397 10 N -0.359 5.359 11 C 0.026 3.974 12 H 0.106 0.894 13 C 0.014 3.986 14 N -0.309 5.309 15 C -0.381 4.381 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.041 3.959 24 C -0.173 4.173 25 C -0.110 4.110 26 H 0.086 0.914 27 C -0.202 4.202 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.229 0.771 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.451 13.141 1.420 21.892 hybrid contribution -1.182 -1.873 -0.185 2.223 sum 16.270 11.268 1.234 19.829 Atomic orbital electron populations 1.20707 0.85761 1.04770 1.04260 1.21334 0.99106 0.86836 0.94773 1.76411 0.99982 1.25944 1.26445 1.83933 1.10889 0.95423 1.67594 1.26047 0.97231 1.02483 1.00813 1.20409 0.94698 0.95204 1.04108 1.20328 0.92478 0.96206 1.14095 1.17286 0.78089 0.83403 0.84471 1.90863 1.52531 1.65058 1.31225 1.46142 1.61498 1.20641 1.07606 1.21847 0.95675 0.81247 0.98585 0.89426 1.21192 0.89143 0.88894 0.99376 1.43987 1.50048 1.12752 1.24149 1.19234 1.06696 1.23096 0.89025 0.91508 1.25006 0.96611 1.01818 0.96065 1.70037 1.31677 1.37486 1.15608 0.86283 0.78517 0.80549 0.81439 1.21414 1.21791 1.20348 1.20842 0.88534 0.97998 0.88488 1.22249 1.00350 0.94152 1.00550 1.21306 0.94884 0.98160 0.96650 0.91428 1.21860 0.96130 1.00775 1.01405 0.89225 0.89743 0.89385 0.89185 0.89983 0.89713 0.77065 0.96405 0.92306 0.93660 0.89236 0.96319 0.92399 0.92702 0.93499 0.92913 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.96 36.00 0.36 -0.71 16 2 C 0.16 2.00 6.75 -83.20 -0.56 1.44 16 3 N -0.47 -5.95 11.97 32.50 0.39 -5.56 16 4 S 0.27 2.68 23.69 -107.50 -2.55 0.13 16 5 C -0.14 -1.43 6.67 -34.43 -0.23 -1.66 16 6 C -0.09 -0.68 10.19 36.00 0.37 -0.32 16 7 C -0.21 -2.70 5.61 -105.95 -0.59 -3.30 16 8 C 0.59 8.81 5.73 -12.56 -0.07 8.74 16 9 O -0.52 -10.13 16.77 5.27 0.09 -10.04 16 10 N -0.71 -9.65 4.37 -54.79 -0.24 -9.89 16 11 C 0.13 2.22 2.06 -67.81 -0.14 2.08 16 12 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 13 C 0.14 2.95 6.09 -3.71 -0.02 2.93 16 14 N -0.59 -14.47 3.00 -172.31 -0.52 -14.99 16 15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 16 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 18 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 19 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.17 3.82 5.31 -3.71 -0.02 3.80 16 24 C -0.13 -2.37 5.36 -26.61 -0.14 -2.52 16 25 C -0.09 -1.37 2.27 -90.58 -0.21 -1.57 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 C -0.14 -1.73 9.02 37.16 0.34 -1.39 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.13 7.39 -51.93 -0.38 0.75 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.40 4.37 8.29 -40.82 -0.34 4.04 16 35 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -31.77 369.61 -9.65 -41.42 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.83 Total: 1.35 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.16 Total: 0.46 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.25 Total: -55.70 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.55 Total: 0.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.77 -9.65 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968688939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.154 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds