Wall clock time and date at job start Sat Apr 11 2020 01:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99567 * 2 1 4 4 C 1.46898 * 111.00331 * 123.95236 * 2 1 3 5 5 C 1.53006 * 109.46782 * 66.04726 * 4 2 1 6 6 C 1.52998 * 109.47096 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47322 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00321 * 270.00454 * 7 6 5 9 9 C 1.50700 * 109.46912 * 269.99844 * 8 7 6 10 10 H 1.07993 * 120.00098 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99664 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00245 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00022 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47077 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47493 * 119.99404 * 13 11 9 16 16 H 1.48499 * 109.47396 * 239.99847 * 13 11 9 17 17 C 1.34777 * 119.99614 * 89.99901 * 7 6 5 18 18 O 1.21727 * 120.00241 * 0.02562 * 17 7 6 19 19 C 1.46256 * 120.00133 * 179.97438 * 17 7 6 20 20 C 1.35234 * 120.00333 * 179.72358 * 19 17 7 21 21 C 1.46396 * 120.00259 * 180.02562 * 20 19 17 22 22 N 1.30831 * 125.55600 * 180.02562 * 21 20 19 23 23 C 1.30807 * 115.81816 * 180.02562 * 22 21 20 24 24 C 1.34168 * 115.80292 * 0.02562 * 23 22 21 25 25 S 1.71056 * 109.15337 * 359.72441 * 24 23 22 26 26 H 1.09005 * 109.47189 * 296.03772 * 1 2 3 27 27 H 1.08997 * 109.47351 * 56.04813 * 1 2 3 28 28 H 1.09002 * 109.46880 * 176.04312 * 1 2 3 29 29 H 1.09003 * 109.47116 * 183.95559 * 3 2 1 30 30 H 1.09001 * 109.47152 * 303.95499 * 3 2 1 31 31 H 1.09007 * 109.47193 * 63.95411 * 3 2 1 32 32 H 1.08996 * 109.47091 * 306.05291 * 4 2 1 33 33 H 1.08994 * 109.47275 * 186.04511 * 4 2 1 34 34 H 1.09001 * 109.46758 * 59.99929 * 5 4 2 35 35 H 1.08999 * 109.46948 * 300.00409 * 5 4 2 36 36 H 1.09004 * 109.46895 * 59.99992 * 6 5 4 37 37 H 1.08997 * 109.47106 * 300.00478 * 6 5 4 38 38 H 1.09000 * 109.47006 * 30.00140 * 8 7 6 39 39 H 1.09004 * 109.46828 * 149.99522 * 8 7 6 40 40 H 0.96994 * 120.00231 * 180.02562 * 12 11 9 41 41 H 1.08000 * 119.99280 * 0.02562 * 19 17 7 42 42 H 1.08004 * 119.99732 * 0.02562 * 20 19 17 43 43 H 1.08001 * 122.09617 * 180.02562 * 23 22 21 44 44 H 1.08005 * 125.41658 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1547 7 7 1.8315 -4.4543 1.9949 8 6 0.5750 -4.9657 2.5480 9 6 0.8045 -5.4422 3.9591 10 1 1.7879 -5.3715 4.3997 11 6 -0.2410 -5.9693 4.6873 12 7 -1.4385 -6.0558 4.1506 13 14 0.0435 -6.5606 6.4362 14 1 1.4680 -6.3556 6.8025 15 1 -0.8226 -5.7917 7.3658 16 1 -0.2885 -8.0049 6.5307 17 6 2.6663 -5.2844 1.3389 18 8 3.7105 -4.8596 0.8797 19 6 2.3183 -6.6960 1.1798 20 6 3.1533 -7.5278 0.5167 21 6 2.8047 -8.9406 0.3570 22 7 3.5290 -9.8378 -0.2612 23 6 3.0335 -11.0480 -0.2911 24 6 1.8477 -11.2087 0.3157 25 16 1.3448 -9.7107 0.9706 26 1 -0.3634 0.4511 0.9234 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3434 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 1.5611 -0.3873 2.0627 33 1 3.0797 -0.6610 1.1756 34 1 2.0659 -2.6213 0.0450 35 1 0.5473 -2.3475 0.9322 36 1 1.7465 -2.6619 3.0802 37 1 3.2647 -2.9355 2.1923 38 1 -0.1713 -4.1713 2.5495 39 1 0.2205 -5.7960 1.9372 40 1 -2.1740 -6.4263 4.6630 41 1 1.3920 -7.0730 1.5876 42 1 4.0775 -7.1498 0.1050 43 1 3.5467 -11.8665 -0.7740 44 1 1.3001 -12.1372 0.3837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520696858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:02:39 Heat of formation + Delta-G solvation = 29.527688 kcal Electronic energy + Delta-G solvation = -24490.970283 eV Core-core repulsion = 20956.775977 eV Total energy + Delta-G solvation = -3534.194306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.50684 -39.19265 -37.59214 -35.30691 -33.73412 -32.86293 -31.54686 -29.62229 -27.63102 -27.43729 -26.55578 -25.22538 -23.18441 -23.02319 -21.41488 -20.58129 -19.81702 -18.39938 -17.47622 -16.80158 -16.49621 -15.76130 -15.59659 -15.30547 -15.03475 -14.70015 -14.51481 -14.42730 -14.01176 -13.93282 -13.50227 -13.20846 -12.80616 -12.48254 -12.39885 -12.15137 -12.01512 -11.78692 -11.62151 -11.52291 -11.29280 -11.22767 -11.11277 -10.96264 -10.77802 -10.32849 -10.28007 -10.09278 -9.78078 -9.68736 -9.35908 -9.27536 -8.62244 -8.34374 -8.20913 -7.75592 -6.24635 -4.32204 0.29019 1.41507 1.87680 1.88239 3.05939 3.17716 3.27053 3.31413 3.67694 3.89219 4.06902 4.26994 4.40253 5.07852 5.08921 5.12755 5.15343 5.16318 5.28506 5.38191 5.44369 5.53544 5.55551 5.60905 5.66263 5.69467 5.78497 5.82783 5.90380 6.00365 6.07008 6.14785 6.35213 6.48028 6.54374 6.63845 6.72923 7.03716 7.06516 7.10527 7.46150 7.70615 7.73842 7.97793 8.22855 8.72349 8.90842 9.36222 10.81808 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.003849 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.611934 B = 7272.632792 C = 9614.797004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.584 5.584 8 C 0.234 3.766 9 C -0.539 4.539 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.546 3.454 18 O -0.568 6.568 19 C -0.140 4.140 20 C -0.033 4.033 21 C 0.074 3.926 22 N -0.457 5.457 23 C 0.032 3.968 24 C -0.301 4.301 25 S 0.189 5.811 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.170 0.830 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 1.100 -6.748 7.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.312 5.312 8 C 0.114 3.886 9 C -0.577 4.577 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.336 3.664 18 O -0.451 6.451 19 C -0.167 4.167 20 C -0.057 4.057 21 C -0.197 4.197 22 N -0.172 5.172 23 C -0.125 4.125 24 C -0.441 4.441 25 S 0.446 5.554 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.170 0.830 43 H 0.187 0.813 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.297 1.487 -7.025 7.539 hybrid contribution -0.069 -0.950 1.451 1.735 sum 2.227 0.538 -5.574 6.027 Atomic orbital electron populations 1.22443 0.87398 1.02785 1.00096 1.61972 1.08111 1.13413 1.43750 1.22367 1.00736 0.89056 1.00171 1.22076 1.00093 0.93878 0.90896 1.21948 1.01577 0.93279 1.00002 1.21232 1.00664 0.80754 0.97536 1.48084 1.22443 1.08083 1.52620 1.19528 0.79699 0.95463 0.93872 1.21544 0.96181 1.41696 0.98315 0.91895 1.24917 0.94871 0.95381 0.98456 1.69922 1.00495 1.44944 1.37403 0.86507 0.78567 0.78597 0.84280 1.19578 1.20825 1.20717 1.17950 0.83553 0.86146 0.78794 1.90740 1.25163 1.78080 1.51087 1.23462 1.00735 0.94261 0.98206 1.21295 1.00351 0.86459 0.97558 1.26311 0.94397 0.98213 1.00780 1.67029 1.31680 1.00798 1.17645 1.21652 0.94076 0.94646 1.02078 1.26619 1.03188 1.05058 1.09252 1.84473 1.22361 0.99344 1.49221 0.95657 0.91775 0.90725 0.91437 0.91639 0.95850 0.94673 0.90717 0.90953 0.91651 0.90389 0.90763 0.94301 0.94325 0.92504 0.83989 0.82968 0.81256 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.07 0.56 0.81 16 2 N -0.55 -7.02 5.02 -251.25 -1.26 -8.28 16 3 C 0.03 0.26 9.57 60.07 0.57 0.83 16 4 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 5 C -0.13 -2.01 5.46 -26.73 -0.15 -2.16 16 6 C 0.12 2.15 5.41 -4.04 -0.02 2.13 16 7 N -0.58 -11.81 2.46 -176.76 -0.43 -12.24 16 8 C 0.23 5.26 4.87 -5.19 -0.03 5.23 16 9 C -0.54 -13.38 9.39 -34.44 -0.32 -13.70 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -23.36 13.29 55.43 0.74 -22.62 16 13 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C 0.55 11.19 7.60 -13.04 -0.10 11.09 16 18 O -0.57 -12.48 15.81 5.16 0.08 -12.40 16 19 C -0.14 -2.60 8.77 -37.43 -0.33 -2.93 16 20 C -0.03 -0.57 9.74 -37.37 -0.36 -0.94 16 21 C 0.07 1.19 7.41 -14.70 -0.11 1.08 16 22 N -0.46 -7.25 10.67 -11.70 -0.12 -7.37 16 23 C 0.03 0.41 11.24 -19.42 -0.22 0.20 16 24 C -0.30 -3.62 11.08 29.30 0.32 -3.30 16 25 S 0.19 2.72 22.05 -107.50 -2.37 0.35 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 29 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 33 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 36 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 37 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 38 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.04 0.89 6.09 -51.93 -0.32 0.57 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.14 2.71 5.30 -52.49 -0.28 2.43 16 42 H 0.15 2.60 7.52 -52.48 -0.39 2.20 16 43 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.18 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -28.57 383.15 -9.56 -38.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.65 Total: 3.05 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.29 Total: 0.72 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -1.08 Total: -50.52 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.37 Total: 0.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.57 -9.56 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520696858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.664 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds