Wall clock time and date at job start Sat Apr 11 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47090 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47464 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47502 * 180.02562 * 11 10 9 13 13 O 1.20834 * 119.99878 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00421 * 179.97438 * 12 11 10 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99784 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99944 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47036 * 89.99828 * 23 21 19 25 25 H 1.48501 * 109.47338 * 209.99683 * 23 21 19 26 26 H 1.48499 * 109.47125 * 329.99973 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.08994 * 109.47627 * 299.99497 * 9 8 7 36 36 H 1.09001 * 109.47155 * 60.00044 * 9 8 7 37 37 H 1.08999 * 109.47241 * 300.00555 * 10 9 8 38 38 H 1.09001 * 109.46760 * 60.00201 * 10 9 8 39 39 H 1.09004 * 109.46699 * 300.00202 * 11 10 9 40 40 H 1.08998 * 109.47030 * 59.99567 * 11 10 9 41 41 H 0.96695 * 117.00023 * 180.02562 * 14 12 11 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.97003 * 119.99565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1353 7.2859 0.0121 10 6 4.3610 8.2017 0.0203 11 6 3.9063 9.6626 0.0203 12 6 5.1135 10.5645 0.0278 13 8 6.2238 10.0878 0.0321 14 8 4.9554 11.8975 0.0286 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.1411 -4.6597 -2.9134 23 14 0.9035 -5.3981 -0.2537 24 1 -0.5276 -5.2730 0.1227 25 1 1.1865 -6.7965 -0.6655 26 1 1.7543 -5.0430 0.9105 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 2.5415 7.4813 -0.8808 36 1 2.5321 7.4790 0.8991 37 1 4.9546 8.0063 0.9133 38 1 4.9646 8.0088 -0.8666 39 1 3.3125 9.8582 -0.8726 40 1 3.3028 9.8552 0.9073 41 1 5.7593 12.4348 0.0330 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574296179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:02:52 Heat of formation + Delta-G solvation = -85.189684 kcal Electronic energy + Delta-G solvation = -25622.644167 eV Core-core repulsion = 21640.722472 eV Total energy + Delta-G solvation = -3981.921695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85300 -40.71259 -38.89214 -36.96226 -36.34367 -34.48957 -33.87894 -32.24411 -31.60137 -31.15469 -28.28985 -27.22003 -26.45650 -23.80809 -22.90579 -21.90949 -21.67642 -21.08231 -19.77719 -18.97531 -18.52600 -17.22892 -17.10433 -16.90514 -16.89954 -15.98801 -15.67399 -15.16157 -15.02868 -14.62239 -14.24045 -13.97758 -13.95365 -13.62700 -13.41856 -13.21355 -12.71027 -12.57428 -12.53787 -12.35080 -12.27277 -12.09568 -12.01088 -11.69844 -11.59942 -11.49688 -11.40321 -11.21685 -11.03727 -10.95461 -10.84228 -10.40457 -10.22787 -9.79686 -9.43461 -8.95959 -8.85097 -8.64773 -7.95563 -6.33060 -4.37754 1.72355 2.13942 2.54463 2.73698 3.05436 3.12072 3.18183 3.22522 3.52327 3.89749 4.15593 4.24613 4.40775 4.43826 4.72923 4.77479 4.92130 4.92382 5.07167 5.14799 5.16409 5.17571 5.28048 5.41461 5.47170 5.55053 5.59844 5.66166 5.78035 5.86303 5.92345 5.98009 6.02851 6.05367 6.26600 6.44536 6.47710 6.60031 6.63032 7.02549 7.18372 7.39592 7.56547 7.74230 8.19880 8.28298 8.60233 8.70208 9.20846 10.79181 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038150 B = 0.001641 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.760751 B =17058.099741 C =17329.279155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.330 4.330 4 C 0.603 3.397 5 O -0.556 6.556 6 N -0.736 5.736 7 C 0.124 3.876 8 C -0.132 4.132 9 C -0.116 4.116 10 C -0.110 4.110 11 C -0.115 4.115 12 C 0.476 3.524 13 O -0.516 6.516 14 O -0.520 6.520 15 C 0.061 3.939 16 N -0.293 5.293 17 N -0.314 5.314 18 C 0.225 3.775 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.883 5.883 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.410 0.590 42 H 0.178 0.822 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 27.645 7.973 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.031 3.969 3 C -0.345 4.345 4 C 0.393 3.607 5 O -0.436 6.436 6 N -0.388 5.388 7 C 0.000 4.000 8 C -0.170 4.170 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.152 4.152 12 C 0.319 3.681 13 O -0.404 6.404 14 O -0.332 6.332 15 C -0.126 4.126 16 N -0.112 5.112 17 N -0.091 5.091 18 C 0.106 3.894 19 C -0.584 4.584 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.519 5.519 23 Si 0.698 3.302 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.188 1.188 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.269 0.731 42 H 0.194 0.806 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.958 26.036 7.852 27.480 hybrid contribution 0.523 0.264 0.446 0.736 sum 4.481 26.300 8.298 27.940 Atomic orbital electron populations 1.20592 0.86726 1.03644 1.04230 1.21472 0.94962 0.86423 0.94011 1.19687 0.93091 0.92631 1.29141 1.17278 0.85033 0.83885 0.74462 1.90691 1.16729 1.84498 1.51644 1.45720 1.09777 1.05605 1.77722 1.21248 0.96395 0.80156 1.02235 1.21787 0.97819 0.94244 1.03154 1.21488 0.97311 0.93621 1.02990 1.21465 0.98263 0.90962 1.04117 1.21434 0.94212 0.93421 1.06150 1.23669 0.91614 0.81365 0.71481 1.90750 1.27799 1.76285 1.45534 1.84545 1.43295 1.19779 1.85626 1.23747 0.96428 0.92530 0.99943 1.77144 0.98073 1.12411 1.23607 1.48899 1.02768 1.07522 1.49867 1.20150 0.95711 0.73347 1.00200 1.21095 1.48067 0.99193 0.90020 0.90037 1.24789 0.94277 0.97396 0.95869 1.69866 1.45141 1.18245 1.18670 0.86902 0.79517 0.81042 0.82703 1.19497 1.20351 1.18792 0.89479 0.91140 0.88665 0.76802 0.91692 0.91755 0.91079 0.91018 0.91178 0.91233 0.90809 0.90765 0.87442 0.87465 0.73115 0.80554 0.92729 0.93425 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.57 36.01 0.34 -1.32 16 2 C 0.17 3.36 7.01 -81.61 -0.57 2.79 16 3 C -0.33 -5.93 6.13 -105.07 -0.64 -6.58 16 4 C 0.60 9.82 7.81 -12.52 -0.10 9.72 16 5 O -0.56 -10.46 14.84 5.28 0.08 -10.39 16 6 N -0.74 -8.62 5.55 -61.38 -0.34 -8.96 16 7 C 0.12 1.17 5.67 -4.04 -0.02 1.15 16 8 C -0.13 -0.83 5.33 -26.73 -0.14 -0.97 16 9 C -0.12 -0.56 5.21 -26.73 -0.14 -0.70 16 10 C -0.11 -0.57 4.50 -26.73 -0.12 -0.69 16 11 C -0.11 -0.47 5.81 -27.89 -0.16 -0.63 16 12 C 0.48 3.05 8.33 36.00 0.30 3.35 16 13 O -0.52 -5.16 16.74 -18.76 -0.31 -5.48 16 14 O -0.52 -2.38 13.42 -39.25 -0.53 -2.91 16 15 C 0.06 1.03 11.50 -16.98 -0.20 0.84 16 16 N -0.29 -6.17 12.50 30.86 0.39 -5.79 16 17 N -0.31 -6.94 3.56 -57.77 -0.21 -7.15 16 18 C 0.22 5.24 5.03 -5.19 -0.03 5.21 16 19 C -0.55 -14.98 9.94 -34.44 -0.34 -15.32 16 20 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 22 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 23 Si 0.87 19.75 27.47 -169.99 -4.67 15.08 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.07 1.16 7.05 -51.93 -0.37 0.80 16 29 H 0.09 1.60 6.50 -51.93 -0.34 1.26 16 30 H 0.40 3.70 7.43 -40.82 -0.30 3.40 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.41 0.36 9.10 45.56 0.41 0.78 16 42 H 0.18 2.11 7.50 -52.49 -0.39 1.72 16 43 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 44 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -35.87 383.19 -6.89 -42.77 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.93 Total: 3.14 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.92 Total: -1.01 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.61 Total: -46.97 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.76 Total: -18.77 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.87 -6.89 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574296179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.424 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds