Wall clock time and date at job start Sat Apr 11 2020 01:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.46868 * 2 1 4 4 C 1.47162 * 111.00062 * 183.67325 * 3 2 1 5 5 C 1.52888 * 108.50148 * 52.11819 * 4 3 2 6 6 C 1.50748 * 109.96601 * 50.43015 * 5 4 3 7 7 C 1.38467 * 118.37533 * 163.11990 * 6 5 4 8 8 C 1.39165 * 120.25581 * 179.73093 * 7 6 5 9 9 C 1.48328 * 120.21906 * 179.97438 * 8 7 6 10 10 C 1.39432 * 120.04940 * 359.75528 * 9 8 7 11 11 C 1.37841 * 119.94280 * 179.71875 * 10 9 8 12 12 C 1.38999 * 120.05365 * 0.55269 * 11 10 9 13 13 O 1.35697 * 119.94719 * 179.74302 * 12 11 10 14 14 C 1.34814 * 116.99800 * 173.28266 * 13 12 11 15 15 H 1.07998 * 120.00342 * 5.08757 * 14 13 12 16 16 C 1.38646 * 120.00002 * 185.09148 * 14 13 12 17 17 N 1.31558 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47342 * 89.99845 * 18 16 14 20 20 H 1.48496 * 109.47337 * 209.99914 * 18 16 14 21 21 H 1.48498 * 109.47052 * 329.99847 * 18 16 14 22 22 C 1.38996 * 120.10169 * 359.71983 * 12 11 10 23 23 C 1.37839 * 120.05384 * 0.02562 * 22 12 11 24 24 C 1.39400 * 119.55899 * 359.96718 * 8 7 6 25 25 C 1.37768 * 119.74189 * 0.09655 * 24 8 7 26 26 C 1.37967 * 121.65367 * 343.28598 * 6 5 4 27 27 C 1.46616 * 111.00031 * 306.65821 * 3 2 1 28 28 H 1.09007 * 109.47330 * 68.33203 * 1 2 3 29 29 H 1.09003 * 109.46994 * 188.33113 * 1 2 3 30 30 H 1.08999 * 109.47842 * 308.33206 * 1 2 3 31 31 H 1.09001 * 109.47080 * 240.00128 * 2 1 3 32 32 H 1.08997 * 109.47245 * 119.99737 * 2 1 3 33 33 H 1.09000 * 109.62689 * 292.42346 * 4 3 2 34 34 H 1.08995 * 109.63617 * 171.83031 * 4 3 2 35 35 H 1.08991 * 109.39208 * 290.27467 * 5 4 3 36 36 H 1.09005 * 109.38540 * 170.57694 * 5 4 3 37 37 H 1.08001 * 119.86942 * 359.75958 * 7 6 5 38 38 H 1.07999 * 120.03174 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.97108 * 180.24878 * 11 10 9 40 40 H 0.96996 * 120.00439 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.97264 * 179.97438 * 22 12 11 42 42 H 1.08004 * 120.02247 * 180.02562 * 23 22 12 43 43 H 1.08006 * 120.12994 * 180.11383 * 24 8 7 44 44 H 1.07997 * 119.72272 * 180.02562 * 25 24 8 45 45 H 1.08999 * 109.26881 * 49.46486 * 27 3 2 46 46 H 1.09005 * 109.26963 * 168.93424 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 3.4880 1.4253 -0.0880 5 6 3.9262 0.5733 -1.2795 6 6 3.1476 0.9679 -2.5085 7 6 3.6297 0.5775 -3.7464 8 6 2.9392 0.9157 -4.9064 9 6 3.4567 0.4976 -6.2321 10 6 4.6413 -0.2325 -6.3205 11 6 5.1172 -0.6249 -7.5532 12 6 4.4233 -0.2836 -8.7082 13 8 4.8965 -0.6666 -9.9210 14 6 4.1093 -0.4265 -10.9887 15 1 3.1878 0.1235 -10.8675 16 6 4.4826 -0.8859 -12.2425 17 7 5.6053 -1.5555 -12.3903 18 14 3.3915 -0.5539 -13.7219 19 1 3.7862 0.7328 -14.3494 20 1 3.5462 -1.6535 -14.7078 21 1 1.9744 -0.4771 -13.2845 22 6 3.2452 0.4490 -8.6228 23 6 2.7626 0.8392 -7.3920 24 6 1.7578 1.6500 -4.8141 25 6 1.2871 2.0348 -3.5778 26 6 1.9830 1.7027 -2.4229 27 6 1.4242 2.1528 -1.0980 28 1 -0.3634 0.3795 -0.9551 29 1 -0.3633 -1.0169 0.1489 30 1 -0.3635 0.6373 0.8061 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9208 1.0237 0.8282 34 1 3.8182 2.4540 -0.2322 35 1 3.7448 -0.4785 -1.0584 36 1 4.9902 0.7251 -1.4610 37 1 4.5450 0.0079 -3.8120 38 1 5.1834 -0.4939 -5.4238 39 1 6.0326 -1.1939 -7.6220 40 1 5.8667 -1.8766 -13.2675 41 1 2.7079 0.7135 -9.5216 42 1 1.8469 1.4081 -7.3262 43 1 1.2135 1.9159 -5.7082 44 1 0.3716 2.6032 -3.5066 45 1 0.3437 2.0093 -1.0928 46 1 1.6467 3.2108 -0.9592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:03:49 Heat of formation + Delta-G solvation = 23.911989 kcal Electronic energy + Delta-G solvation = -25967.995859 eV Core-core repulsion = 22401.654431 eV Total energy + Delta-G solvation = -3566.341429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -40.61332 -39.16418 -37.78164 -36.18605 -33.25206 -32.61022 -31.97761 -30.78748 -30.24863 -29.22953 -27.71408 -25.66101 -24.81474 -23.71984 -22.63748 -22.55822 -21.20056 -20.73043 -18.84186 -18.09962 -17.31177 -16.49331 -15.89120 -15.77251 -15.59227 -15.02473 -14.77107 -14.59270 -14.14222 -14.04349 -13.77218 -13.62819 -13.40391 -13.30364 -12.85644 -12.62938 -12.54880 -12.40581 -12.20316 -12.03372 -11.92929 -11.76670 -11.64537 -11.43895 -11.25473 -11.09827 -10.91129 -10.84963 -10.68847 -10.54880 -10.38893 -9.42462 -9.09879 -8.67263 -8.56014 -8.50155 -8.31495 -6.98748 -6.56507 -4.13157 1.11888 1.48900 2.14671 2.44785 3.06837 3.07867 3.12740 3.73482 3.86151 3.88821 4.55279 4.60006 4.71006 4.77377 4.85163 4.90445 4.96996 4.99393 5.03586 5.11504 5.24016 5.28743 5.30144 5.38535 5.43360 5.52579 5.57645 5.60280 5.63133 5.66805 5.72513 5.78832 5.82768 5.94876 6.04904 6.10449 6.18285 6.26067 6.42113 6.56837 6.60870 6.66725 6.78598 6.82430 6.89410 6.96255 7.08456 7.22785 7.29968 7.34717 7.69791 7.88385 8.88540 9.56695 10.60743 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.002243 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.059666 B =12483.063395 C =12957.760856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 N -0.527 5.527 4 C 0.053 3.947 5 C -0.118 4.118 6 C -0.072 4.072 7 C -0.130 4.130 8 C 0.005 3.995 9 C -0.162 4.162 10 C -0.057 4.057 11 C -0.193 4.193 12 C 0.160 3.840 13 O -0.170 6.170 14 C -0.392 4.392 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.857 5.857 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.235 4.235 23 C -0.052 4.052 24 C -0.131 4.131 25 C -0.106 4.106 26 C -0.138 4.138 27 C 0.089 3.911 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.088 0.912 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 5.224 21.602 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.249 5.249 4 C -0.075 4.075 5 C -0.156 4.156 6 C -0.072 4.072 7 C -0.148 4.148 8 C 0.005 3.995 9 C -0.163 4.163 10 C -0.075 4.075 11 C -0.212 4.212 12 C 0.105 3.895 13 O -0.072 6.072 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.491 5.491 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.254 4.254 23 C -0.070 4.070 24 C -0.149 4.149 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.039 4.039 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.106 0.894 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.434 5.202 21.788 23.602 hybrid contribution -0.253 -0.219 -1.765 1.797 sum -7.687 4.982 20.023 22.019 Atomic orbital electron populations 1.21865 0.95086 1.01883 1.02191 1.22172 0.95855 0.89485 1.01146 1.62786 1.06417 1.12941 1.42718 1.22201 0.87806 1.00538 0.96996 1.21102 1.00027 1.00821 0.93648 1.19343 0.95060 0.98409 0.94378 1.21099 1.00566 1.01943 0.91176 1.18776 0.93514 0.94867 0.92386 1.18225 0.98711 1.08207 0.91146 1.20699 0.94607 0.96007 0.96177 1.20156 1.02979 1.07925 0.90187 1.19485 0.91535 0.91643 0.86864 1.83951 1.42488 1.69519 1.11253 1.21391 1.04441 1.36678 0.84307 0.88824 1.25341 0.97074 0.95794 0.98306 1.70034 1.21094 1.33381 1.24606 0.85677 0.79430 0.78449 0.79712 1.19741 1.20125 1.19079 1.21104 0.99757 1.06557 0.98020 1.20819 0.97775 0.96911 0.91522 1.21144 0.96562 0.99751 0.97438 1.20888 0.99484 1.00169 0.91945 1.20186 0.96253 1.01315 0.96242 1.21152 0.99467 0.97997 0.85242 0.92473 0.92269 0.91883 0.93656 0.90949 0.90210 0.90397 0.90480 0.90276 0.86161 0.86778 0.86237 0.91797 0.85270 0.87096 0.86014 0.86518 0.89405 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.17 37.15 0.34 -0.86 16 2 C 0.04 0.36 5.14 -3.83 -0.02 0.34 16 3 N -0.53 -4.86 5.12 -236.19 -1.21 -6.07 16 4 C 0.05 0.45 6.06 -3.74 -0.02 0.43 16 5 C -0.12 -1.13 5.15 -27.92 -0.14 -1.27 16 6 C -0.07 -0.88 5.08 -104.61 -0.53 -1.41 16 7 C -0.13 -1.82 9.04 -39.15 -0.35 -2.17 16 8 C 0.00 0.07 5.87 -104.97 -0.62 -0.54 16 9 C -0.16 -2.90 5.88 -104.86 -0.62 -3.51 16 10 C -0.06 -1.03 9.42 -39.28 -0.37 -1.40 16 11 C -0.19 -4.04 9.98 -39.44 -0.39 -4.43 16 12 C 0.16 3.80 6.65 -39.02 -0.26 3.54 16 13 O -0.17 -4.76 9.75 0.26 0.00 -4.75 16 14 C -0.39 -10.72 9.48 30.88 0.29 -10.43 16 15 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 18 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.24 -5.04 9.15 -39.45 -0.36 -5.40 16 23 C -0.05 -0.96 9.42 -39.28 -0.37 -1.33 16 24 C -0.13 -1.83 9.43 -39.32 -0.37 -2.20 16 25 C -0.11 -1.28 9.63 -39.52 -0.38 -1.66 16 26 C -0.14 -1.62 5.38 -104.51 -0.56 -2.18 16 27 C 0.09 0.85 5.25 -5.15 -0.03 0.82 16 28 H 0.06 0.48 6.61 -51.93 -0.34 0.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 5.42 -51.93 -0.28 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 35 H 0.08 0.72 6.77 -51.93 -0.35 0.37 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.12 1.57 6.19 -52.49 -0.33 1.25 16 38 H 0.11 1.73 6.20 -52.49 -0.33 1.40 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 41 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 42 H 0.11 1.74 6.21 -52.48 -0.33 1.41 16 43 H 0.12 1.57 6.22 -52.48 -0.33 1.25 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.09 0.76 5.77 -51.93 -0.30 0.47 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -29.90 361.63 -10.96 -40.86 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.08 Total: 6.05 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -4.86 Total: -32.69 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: -0.45 Total: -29.93 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.75 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.90 -10.96 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.774 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds