Wall clock time and date at job start Sat Apr 11 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.46868 * 2 1 4 4 C 1.47162 * 111.00062 * 183.67325 * 3 2 1 5 5 C 1.52888 * 108.50148 * 52.11819 * 4 3 2 6 6 C 1.50748 * 109.96601 * 50.43015 * 5 4 3 7 7 C 1.38467 * 118.37533 * 163.11990 * 6 5 4 8 8 C 1.39165 * 120.25581 * 179.73093 * 7 6 5 9 9 C 1.48328 * 120.21906 * 179.97438 * 8 7 6 10 10 C 1.39432 * 120.04940 * 359.75528 * 9 8 7 11 11 C 1.37841 * 119.94280 * 179.71875 * 10 9 8 12 12 C 1.38999 * 120.05365 * 0.55269 * 11 10 9 13 13 O 1.35697 * 119.94719 * 179.74302 * 12 11 10 14 14 C 1.34814 * 116.99800 * 173.28266 * 13 12 11 15 15 H 1.07998 * 120.00342 * 5.08757 * 14 13 12 16 16 C 1.38646 * 120.00002 * 185.09148 * 14 13 12 17 17 N 1.31558 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47342 * 89.99845 * 18 16 14 20 20 H 1.48496 * 109.47337 * 209.99914 * 18 16 14 21 21 H 1.48498 * 109.47052 * 329.99847 * 18 16 14 22 22 C 1.38996 * 120.10169 * 359.71983 * 12 11 10 23 23 C 1.37839 * 120.05384 * 0.02562 * 22 12 11 24 24 C 1.39400 * 119.55899 * 359.96718 * 8 7 6 25 25 C 1.37768 * 119.74189 * 0.09655 * 24 8 7 26 26 C 1.37967 * 121.65367 * 343.28598 * 6 5 4 27 27 C 1.46616 * 111.00031 * 306.65821 * 3 2 1 28 28 H 1.09007 * 109.47330 * 68.33203 * 1 2 3 29 29 H 1.09003 * 109.46994 * 188.33113 * 1 2 3 30 30 H 1.08999 * 109.47842 * 308.33206 * 1 2 3 31 31 H 1.09001 * 109.47080 * 240.00128 * 2 1 3 32 32 H 1.08997 * 109.47245 * 119.99737 * 2 1 3 33 33 H 1.09000 * 109.62689 * 292.42346 * 4 3 2 34 34 H 1.08995 * 109.63617 * 171.83031 * 4 3 2 35 35 H 1.08991 * 109.39208 * 290.27467 * 5 4 3 36 36 H 1.09005 * 109.38540 * 170.57694 * 5 4 3 37 37 H 1.08001 * 119.86942 * 359.75958 * 7 6 5 38 38 H 1.07999 * 120.03174 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.97108 * 180.24878 * 11 10 9 40 40 H 0.96996 * 120.00439 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.97264 * 179.97438 * 22 12 11 42 42 H 1.08004 * 120.02247 * 180.02562 * 23 22 12 43 43 H 1.08006 * 120.12994 * 180.11383 * 24 8 7 44 44 H 1.07997 * 119.72272 * 180.02562 * 25 24 8 45 45 H 1.08999 * 109.26881 * 49.46486 * 27 3 2 46 46 H 1.09005 * 109.26963 * 168.93424 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 3.4880 1.4253 -0.0880 5 6 3.9262 0.5733 -1.2795 6 6 3.1476 0.9679 -2.5085 7 6 3.6297 0.5775 -3.7464 8 6 2.9392 0.9157 -4.9064 9 6 3.4567 0.4976 -6.2321 10 6 4.6413 -0.2325 -6.3205 11 6 5.1172 -0.6249 -7.5532 12 6 4.4233 -0.2836 -8.7082 13 8 4.8965 -0.6666 -9.9210 14 6 4.1093 -0.4265 -10.9887 15 1 3.1878 0.1235 -10.8675 16 6 4.4826 -0.8859 -12.2425 17 7 5.6053 -1.5555 -12.3903 18 14 3.3915 -0.5539 -13.7219 19 1 3.7862 0.7328 -14.3494 20 1 3.5462 -1.6535 -14.7078 21 1 1.9744 -0.4771 -13.2845 22 6 3.2452 0.4490 -8.6228 23 6 2.7626 0.8392 -7.3920 24 6 1.7578 1.6500 -4.8141 25 6 1.2871 2.0348 -3.5778 26 6 1.9830 1.7027 -2.4229 27 6 1.4242 2.1528 -1.0980 28 1 -0.3634 0.3795 -0.9551 29 1 -0.3633 -1.0169 0.1489 30 1 -0.3635 0.6373 0.8061 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9208 1.0237 0.8282 34 1 3.8182 2.4540 -0.2322 35 1 3.7448 -0.4785 -1.0584 36 1 4.9902 0.7251 -1.4610 37 1 4.5450 0.0079 -3.8120 38 1 5.1834 -0.4939 -5.4238 39 1 6.0326 -1.1939 -7.6220 40 1 5.8667 -1.8766 -13.2675 41 1 2.7079 0.7135 -9.5216 42 1 1.8469 1.4081 -7.3262 43 1 1.2135 1.9159 -5.7082 44 1 0.3716 2.6032 -3.5066 45 1 0.3437 2.0093 -1.0928 46 1 1.6467 3.2108 -0.9592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:03:46 Heat of formation + Delta-G solvation = 7.822167 kcal Electronic energy + Delta-G solvation = -25968.693566 eV Core-core repulsion = 22401.654431 eV Total energy + Delta-G solvation = -3567.039136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.55130 -40.76833 -39.03350 -37.58529 -34.42237 -34.06140 -33.20906 -32.10914 -31.36328 -30.28929 -28.93904 -27.45068 -25.79798 -24.69212 -23.84262 -23.67065 -22.46506 -21.99877 -19.94099 -19.70472 -19.01155 -17.58878 -16.93254 -16.72461 -16.49853 -16.26001 -16.11124 -15.96992 -15.60804 -15.27972 -15.12227 -15.04776 -14.62295 -14.41497 -14.16031 -13.82244 -13.62687 -13.41578 -13.39658 -13.15962 -12.98750 -12.94227 -12.77014 -12.56836 -12.43873 -12.23273 -12.15713 -12.12136 -11.99008 -11.65765 -11.47049 -11.15132 -10.87840 -9.93435 -9.90688 -9.62659 -9.27491 -8.53525 -8.49618 -6.18463 -0.11652 0.47394 0.52430 1.03375 1.33984 1.43924 1.51632 2.15000 2.62904 2.94953 3.04739 3.22933 3.42248 3.67561 3.77287 3.89368 3.95269 4.02624 4.10065 4.14782 4.23800 4.24804 4.35474 4.41197 4.44451 4.57711 4.59020 4.64849 4.68058 4.72757 4.88370 4.90914 4.95291 5.00999 5.04932 5.10039 5.11428 5.14039 5.17942 5.26649 5.33870 5.37466 5.44093 5.56943 5.62337 5.68104 5.89154 5.97556 6.07153 6.09499 6.13694 6.15553 6.92860 7.71093 8.71366 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.002243 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.059666 B =12483.063395 C =12957.760856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 N -0.528 5.528 4 C 0.054 3.946 5 C -0.116 4.116 6 C -0.080 4.080 7 C -0.132 4.132 8 C -0.031 4.031 9 C -0.136 4.136 10 C -0.057 4.057 11 C -0.201 4.201 12 C 0.119 3.881 13 O -0.226 6.226 14 C -0.416 4.416 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.918 5.918 18 Si 1.020 2.980 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.240 4.240 23 C -0.057 4.057 24 C -0.134 4.134 25 C -0.109 4.109 26 C -0.127 4.127 27 C 0.089 3.911 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.274 0.726 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.130 0.870 44 H 0.144 0.856 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 6.767 25.096 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 N -0.250 5.250 4 C -0.074 4.074 5 C -0.154 4.154 6 C -0.080 4.080 7 C -0.150 4.150 8 C -0.031 4.031 9 C -0.136 4.136 10 C -0.074 4.074 11 C -0.220 4.220 12 C 0.068 3.932 13 O -0.132 6.132 14 C -0.492 4.492 15 H 0.121 0.879 16 C -0.219 4.219 17 N -0.555 5.555 18 Si 0.838 3.162 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.176 1.176 22 C -0.259 4.259 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.039 4.039 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.137 0.863 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.148 0.852 44 H 0.162 0.838 45 H 0.118 0.882 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.774 6.768 25.357 28.006 hybrid contribution 0.349 -0.569 -2.228 2.325 sum -9.426 6.198 23.129 25.734 Atomic orbital electron populations 1.21843 0.94441 1.02460 1.02022 1.22201 0.96416 0.89158 1.00889 1.62819 1.06799 1.13109 1.42261 1.22261 0.87471 1.00513 0.97190 1.21138 1.00115 1.01223 0.92902 1.19660 0.95506 0.98112 0.94718 1.21272 1.00639 1.01642 0.91464 1.18731 0.95297 0.97680 0.91376 1.18653 0.97465 1.05077 0.92450 1.21044 0.94931 0.95370 0.96093 1.20395 1.03004 1.08035 0.90592 1.20004 0.93288 0.93212 0.86653 1.83926 1.44133 1.72584 1.12520 1.21859 1.05074 1.37278 0.84940 0.87904 1.26621 0.98617 0.95372 1.01338 1.70178 1.23689 1.36219 1.25445 0.84574 0.77733 0.78579 0.75265 1.18705 1.19530 1.17607 1.21212 0.99084 1.06338 0.99242 1.21136 0.98930 0.96921 0.90469 1.21335 0.95958 0.99186 0.98743 1.21211 1.00390 0.99918 0.91221 1.20602 0.95467 0.99463 0.97362 1.21256 1.00091 0.98498 0.84047 0.93035 0.91606 0.91392 0.95157 0.89991 0.88592 0.90268 0.90096 0.89506 0.85617 0.83518 0.86296 0.91693 0.85723 0.83913 0.85216 0.83797 0.88230 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.17 71.98 0.66 -1.23 16 2 C 0.04 0.59 5.14 86.30 0.44 1.03 16 3 N -0.53 -7.78 5.12 -901.16 -4.61 -12.40 16 4 C 0.05 0.72 6.06 86.22 0.52 1.25 16 5 C -0.12 -1.84 5.15 29.83 0.15 -1.69 16 6 C -0.08 -1.70 5.08 -19.86 -0.10 -1.80 16 7 C -0.13 -3.36 9.04 22.55 0.20 -3.16 16 8 C -0.03 -0.89 5.87 -20.09 -0.12 -1.00 16 9 C -0.14 -4.66 5.88 -20.02 -0.12 -4.78 16 10 C -0.06 -2.01 9.42 22.46 0.21 -1.80 16 11 C -0.20 -8.71 9.98 22.36 0.22 -8.49 16 12 C 0.12 6.00 6.65 22.63 0.15 6.15 16 13 O -0.23 -13.58 9.75 -21.98 -0.21 -13.80 16 14 C -0.42 -24.11 9.48 67.92 0.64 -23.47 16 15 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 16 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 17 N -0.92 -56.06 13.67 21.61 0.30 -55.76 16 18 Si 1.02 42.48 29.55 68.60 2.03 44.51 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 22 C -0.24 -10.56 9.15 22.36 0.20 -10.35 16 23 C -0.06 -2.05 9.42 22.46 0.21 -1.84 16 24 C -0.13 -3.34 9.43 22.44 0.21 -3.13 16 25 C -0.11 -2.22 9.63 22.31 0.21 -2.01 16 26 C -0.13 -2.51 5.38 -19.79 -0.11 -2.61 16 27 C 0.09 1.34 5.25 85.60 0.45 1.79 16 28 H 0.05 0.70 6.61 -2.38 -0.02 0.69 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.03 0.53 5.42 -2.39 -0.01 0.52 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 35 H 0.08 1.26 6.77 -2.39 -0.02 1.24 16 36 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.13 2.95 6.19 -2.91 -0.02 2.94 16 38 H 0.15 4.17 6.20 -2.91 -0.02 4.15 16 39 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.13 5.49 5.64 -2.91 -0.02 5.48 16 42 H 0.14 4.17 6.21 -2.91 -0.02 4.15 16 43 H 0.13 2.94 6.22 -2.91 -0.02 2.92 16 44 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 45 H 0.10 1.32 5.77 -2.39 -0.01 1.30 16 46 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -69.71 361.63 3.03 -66.68 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.01 Total: 28.64 kcal Atomic # 6 Polarization: -62.40 SS G_CDS: 4.53 Total: -57.88 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -4.32 Total: -68.16 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.21 Total: -13.80 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -69.71 3.03 -66.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.501 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds