Wall clock time and date at job start Sat Apr 11 2020 01:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48561 * 110.99642 * 2 1 4 4 C 1.54385 * 104.59104 * 159.04307 * 3 2 1 5 5 C 1.54260 * 105.06063 * 336.14842 * 4 3 2 6 6 H 1.09000 * 110.32446 * 118.89873 * 5 4 3 7 7 C 1.50698 * 110.32444 * 241.00409 * 5 4 3 8 8 C 1.38332 * 119.87771 * 59.72615 * 7 5 4 9 9 C 1.37999 * 120.12658 * 179.76639 * 8 7 5 10 10 C 1.39380 * 119.87651 * 0.50618 * 9 8 7 11 11 C 1.48317 * 120.12921 * 179.72170 * 10 9 8 12 12 C 1.39441 * 120.05425 * 179.74467 * 11 10 9 13 13 C 1.37833 * 119.94507 * 179.74772 * 12 11 10 14 14 C 1.38999 * 120.05747 * 0.53420 * 13 12 11 15 15 O 1.35691 * 119.95253 * 179.72083 * 14 13 12 16 16 C 1.34811 * 117.00153 * 174.47282 * 15 14 13 17 17 H 1.08005 * 120.00311 * 5.05773 * 16 15 14 18 18 C 1.38649 * 119.99954 * 185.05753 * 16 15 14 19 19 N 1.31555 * 120.00316 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47112 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47009 * 120.00195 * 20 18 16 23 23 H 1.48501 * 109.46951 * 239.99838 * 20 18 16 24 24 C 1.39007 * 120.10050 * 359.74486 * 14 13 12 25 25 C 1.37835 * 120.05109 * 359.97438 * 24 14 13 26 26 C 1.39383 * 119.74643 * 359.74988 * 10 9 8 27 27 C 1.38004 * 119.87436 * 359.97438 * 26 10 9 28 28 C 1.48556 * 111.00363 * 115.42443 * 2 1 3 29 29 H 1.09004 * 109.47316 * 59.87319 * 1 2 3 30 30 H 1.09006 * 109.47044 * 179.87030 * 1 2 3 31 31 H 1.09000 * 109.46882 * 299.86699 * 1 2 3 32 32 H 1.08999 * 110.41073 * 40.26972 * 3 2 1 33 33 H 1.08993 * 110.41496 * 277.82121 * 3 2 1 34 34 H 1.08995 * 110.32320 * 95.04423 * 4 3 2 35 35 H 1.08998 * 110.32477 * 217.25447 * 4 3 2 36 36 H 1.08001 * 119.93386 * 359.97438 * 8 7 5 37 37 H 1.08000 * 120.06371 * 180.25202 * 9 8 7 38 38 H 1.07998 * 120.02114 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.97164 * 180.27737 * 13 12 11 40 40 H 0.96995 * 120.00334 * 179.97438 * 19 18 16 41 41 H 1.08000 * 119.97488 * 180.02562 * 24 14 13 42 42 H 1.07998 * 120.02343 * 180.02562 * 25 24 14 43 43 H 1.08005 * 120.06308 * 180.02562 * 26 10 9 44 44 H 1.07996 * 119.93879 * 180.02562 * 27 26 10 45 45 H 1.09001 * 110.41279 * 82.17614 * 28 2 1 46 46 H 1.08999 * 110.50829 * 319.78858 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4433 1.2501 0.5344 5 6 3.4433 -0.0539 1.3584 6 1 4.1484 -0.7693 0.9350 7 6 3.7920 0.2351 2.7957 8 6 2.9993 1.0918 3.5382 9 6 3.3110 1.3564 4.8562 10 6 4.4330 0.7668 5.4361 11 6 4.7767 1.0520 6.8504 12 6 5.8965 0.4572 7.4306 13 6 6.2169 0.7279 8.7435 14 6 5.4185 1.5844 9.4926 15 8 5.7326 1.8450 10.7866 16 6 4.9869 2.7703 11.4231 17 1 4.1313 3.2071 10.9295 18 6 5.3184 3.1613 12.7114 19 7 6.3602 2.6289 13.3129 20 14 4.2846 4.4429 13.5936 21 1 3.1773 4.8817 12.7068 22 1 3.7215 3.8552 14.8357 23 1 5.1337 5.6111 13.9395 24 6 4.2984 2.1741 8.9181 25 6 3.9773 1.9109 7.6038 26 6 5.2311 -0.0915 4.6816 27 6 4.9064 -0.3532 3.3661 28 6 2.0015 -0.5954 1.2525 29 1 -0.3634 0.5158 -0.8889 30 1 -0.3633 -1.0277 -0.0023 31 1 -0.3633 0.5118 0.8912 32 1 1.4098 2.0211 0.6603 33 1 2.0078 1.7917 -1.0120 34 1 4.1482 1.1749 -0.2935 35 1 3.6937 2.0995 1.1699 36 1 2.1329 1.5519 3.0864 37 1 2.6892 2.0222 5.4361 38 1 6.5148 -0.2116 6.8502 39 1 7.0866 0.2709 9.1920 40 1 6.5923 2.9027 14.2140 41 1 3.6797 2.8396 9.5019 42 1 3.1072 2.3696 7.1578 43 1 6.1014 -0.5515 5.1260 44 1 5.5238 -1.0184 2.7807 45 1 2.0079 -1.6832 1.1836 46 1 1.4105 -0.2732 2.1099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243595530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:00 Heat of formation + Delta-G solvation = 23.467551 kcal Electronic energy + Delta-G solvation = -25412.423924 eV Core-core repulsion = 21846.063223 eV Total energy + Delta-G solvation = -3566.360701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.14874 -39.18675 -38.21845 -36.41400 -33.51782 -32.39196 -31.21058 -30.87550 -30.06524 -29.19206 -27.36371 -25.80865 -25.24166 -23.25473 -22.78402 -21.52617 -21.20858 -20.73515 -19.84752 -18.07289 -17.47205 -16.56909 -16.27296 -15.77303 -15.15478 -14.94635 -14.57688 -14.48538 -14.24599 -13.84302 -13.75264 -13.69190 -13.45525 -13.35347 -13.11920 -12.88304 -12.73416 -12.38989 -12.03948 -11.92197 -11.82167 -11.77925 -11.69239 -11.32340 -11.27587 -11.06543 -10.92602 -10.84133 -10.59849 -10.51943 -10.39850 -9.41178 -9.12244 -8.89682 -8.78280 -8.55279 -8.30668 -6.97718 -6.56433 -4.12887 1.12703 1.54392 2.15622 2.46370 3.06559 3.07964 3.13611 3.70433 3.87182 3.89472 4.35947 4.52038 4.60229 4.64302 4.90484 4.93551 4.99875 5.01541 5.05710 5.09850 5.10624 5.17272 5.22917 5.31202 5.36640 5.49641 5.50656 5.55329 5.61104 5.65784 5.68569 5.70515 5.82992 5.90661 6.03855 6.13362 6.17736 6.28042 6.40522 6.52163 6.61580 6.64514 6.67862 6.69286 6.83429 6.96732 7.09705 7.23718 7.30808 7.35628 7.70744 7.88732 8.88819 9.57220 10.60926 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.002066 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.619540 B =13551.741213 C =14280.044170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.518 5.518 3 C 0.030 3.970 4 C -0.118 4.118 5 C -0.047 4.047 6 H 0.085 0.915 7 C -0.103 4.103 8 C -0.107 4.107 9 C -0.129 4.129 10 C 0.002 3.998 11 C -0.163 4.163 12 C -0.056 4.056 13 C -0.193 4.193 14 C 0.160 3.840 15 O -0.170 6.170 16 C -0.392 4.392 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.857 5.857 20 Si 0.943 3.057 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.236 4.236 25 C -0.053 4.053 26 C -0.129 4.129 27 C -0.106 4.106 28 C 0.038 3.962 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 -3.541 -22.917 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.242 5.242 3 C -0.098 4.098 4 C -0.156 4.156 5 C -0.066 4.066 6 H 0.103 0.897 7 C -0.104 4.104 8 C -0.125 4.125 9 C -0.147 4.147 10 C 0.002 3.998 11 C -0.163 4.163 12 C -0.075 4.075 13 C -0.213 4.213 14 C 0.105 3.895 15 O -0.072 6.072 16 C -0.468 4.468 17 H 0.112 0.888 18 C -0.166 4.166 19 N -0.491 5.491 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.255 4.255 25 C -0.071 4.071 26 C -0.147 4.147 27 C -0.124 4.124 28 C -0.090 4.090 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.099 0.901 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.395 -3.907 -22.985 24.460 hybrid contribution -0.904 1.128 1.238 1.903 sum -8.299 -2.779 -21.747 23.442 Atomic orbital electron populations 1.22509 0.88045 1.02254 1.00815 1.65381 1.08158 1.15428 1.35203 1.23156 0.95456 0.90094 1.01046 1.22430 0.96292 0.97458 0.99376 1.20786 0.96673 0.97323 0.91825 0.89702 1.19626 0.96572 0.99312 0.94869 1.20741 0.99253 0.98446 0.94047 1.21162 0.97610 1.01048 0.94910 1.18849 0.93665 0.94614 0.92708 1.18244 0.99913 1.05687 0.92500 1.20714 0.95425 0.97507 0.93817 1.20158 1.02281 1.04694 0.94137 1.19493 0.92197 0.92699 0.85154 1.83952 1.53240 1.52253 1.17782 1.21440 1.09977 1.17661 0.97686 0.88767 1.25346 0.96943 0.98310 0.95957 1.70042 1.24715 1.40586 1.13744 0.85613 0.79057 0.79295 0.79286 1.19002 1.20018 1.20013 1.21108 1.00848 1.07373 0.96181 1.20819 0.97396 0.95552 0.93304 1.21187 1.00193 0.99329 0.93990 1.20886 0.96704 0.99773 0.95024 1.23280 0.94483 1.00261 0.90957 0.91331 0.91226 0.95269 0.93797 0.90164 0.90859 0.90693 0.87062 0.86118 0.86637 0.86221 0.91852 0.85285 0.87147 0.85944 0.86465 0.90058 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.53 60.07 0.57 0.66 16 2 N -0.52 -4.55 5.66 -238.23 -1.35 -5.89 16 3 C 0.03 0.24 6.49 -2.18 -0.01 0.23 16 4 C -0.12 -0.98 6.43 -25.35 -0.16 -1.15 16 5 C -0.05 -0.43 3.27 -90.39 -0.30 -0.73 16 6 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 7 C -0.10 -1.15 4.75 -104.55 -0.50 -1.64 16 8 C -0.11 -1.26 8.14 -39.63 -0.32 -1.58 16 9 C -0.13 -1.76 9.43 -39.24 -0.37 -2.13 16 10 C 0.00 0.03 5.88 -104.90 -0.62 -0.59 16 11 C -0.16 -2.86 5.88 -104.86 -0.62 -3.48 16 12 C -0.06 -1.01 9.42 -39.28 -0.37 -1.38 16 13 C -0.19 -4.01 9.98 -39.45 -0.39 -4.41 16 14 C 0.16 3.78 6.65 -39.01 -0.26 3.52 16 15 O -0.17 -4.75 9.75 0.29 0.00 -4.74 16 16 C -0.39 -10.68 9.48 30.88 0.29 -10.39 16 17 H 0.09 2.37 5.19 -52.48 -0.27 2.10 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 20 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C -0.24 -5.03 9.15 -39.44 -0.36 -5.39 16 25 C -0.05 -0.96 9.42 -39.28 -0.37 -1.33 16 26 C -0.13 -1.73 9.43 -39.24 -0.37 -2.10 16 27 C -0.11 -1.23 9.66 -39.63 -0.38 -1.61 16 28 C 0.04 0.34 5.93 -2.19 -0.01 0.33 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.03 0.21 7.97 -51.93 -0.41 -0.20 16 32 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.67 7.35 -51.93 -0.38 0.28 16 36 H 0.11 1.14 7.67 -52.49 -0.40 0.74 16 37 H 0.12 1.54 6.20 -52.49 -0.33 1.22 16 38 H 0.12 1.70 6.20 -52.49 -0.33 1.38 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.13 2.73 5.62 -52.49 -0.30 2.44 16 42 H 0.11 1.72 6.20 -52.49 -0.33 1.39 16 43 H 0.12 1.50 6.20 -52.48 -0.33 1.17 16 44 H 0.12 1.11 7.96 -52.49 -0.42 0.69 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -29.76 370.47 -11.00 -40.75 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.32 Total: 5.34 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -4.65 Total: -32.21 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: -0.59 Total: -29.71 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.76 -11.00 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243595530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.219 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds