Wall clock time and date at job start Sat Apr 11 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48561 * 110.99642 * 2 1 4 4 C 1.54385 * 104.59104 * 159.04307 * 3 2 1 5 5 C 1.54260 * 105.06063 * 336.14842 * 4 3 2 6 6 H 1.09000 * 110.32446 * 118.89873 * 5 4 3 7 7 C 1.50698 * 110.32444 * 241.00409 * 5 4 3 8 8 C 1.38332 * 119.87771 * 59.72615 * 7 5 4 9 9 C 1.37999 * 120.12658 * 179.76639 * 8 7 5 10 10 C 1.39380 * 119.87651 * 0.50618 * 9 8 7 11 11 C 1.48317 * 120.12921 * 179.72170 * 10 9 8 12 12 C 1.39441 * 120.05425 * 179.74467 * 11 10 9 13 13 C 1.37833 * 119.94507 * 179.74772 * 12 11 10 14 14 C 1.38999 * 120.05747 * 0.53420 * 13 12 11 15 15 O 1.35691 * 119.95253 * 179.72083 * 14 13 12 16 16 C 1.34811 * 117.00153 * 174.47282 * 15 14 13 17 17 H 1.08005 * 120.00311 * 5.05773 * 16 15 14 18 18 C 1.38649 * 119.99954 * 185.05753 * 16 15 14 19 19 N 1.31555 * 120.00316 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47112 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47009 * 120.00195 * 20 18 16 23 23 H 1.48501 * 109.46951 * 239.99838 * 20 18 16 24 24 C 1.39007 * 120.10050 * 359.74486 * 14 13 12 25 25 C 1.37835 * 120.05109 * 359.97438 * 24 14 13 26 26 C 1.39383 * 119.74643 * 359.74988 * 10 9 8 27 27 C 1.38004 * 119.87436 * 359.97438 * 26 10 9 28 28 C 1.48556 * 111.00363 * 115.42443 * 2 1 3 29 29 H 1.09004 * 109.47316 * 59.87319 * 1 2 3 30 30 H 1.09006 * 109.47044 * 179.87030 * 1 2 3 31 31 H 1.09000 * 109.46882 * 299.86699 * 1 2 3 32 32 H 1.08999 * 110.41073 * 40.26972 * 3 2 1 33 33 H 1.08993 * 110.41496 * 277.82121 * 3 2 1 34 34 H 1.08995 * 110.32320 * 95.04423 * 4 3 2 35 35 H 1.08998 * 110.32477 * 217.25447 * 4 3 2 36 36 H 1.08001 * 119.93386 * 359.97438 * 8 7 5 37 37 H 1.08000 * 120.06371 * 180.25202 * 9 8 7 38 38 H 1.07998 * 120.02114 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.97164 * 180.27737 * 13 12 11 40 40 H 0.96995 * 120.00334 * 179.97438 * 19 18 16 41 41 H 1.08000 * 119.97488 * 180.02562 * 24 14 13 42 42 H 1.07998 * 120.02343 * 180.02562 * 25 24 14 43 43 H 1.08005 * 120.06308 * 180.02562 * 26 10 9 44 44 H 1.07996 * 119.93879 * 180.02562 * 27 26 10 45 45 H 1.09001 * 110.41279 * 82.17614 * 28 2 1 46 46 H 1.08999 * 110.50829 * 319.78858 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4433 1.2501 0.5344 5 6 3.4433 -0.0539 1.3584 6 1 4.1484 -0.7693 0.9350 7 6 3.7920 0.2351 2.7957 8 6 2.9993 1.0918 3.5382 9 6 3.3110 1.3564 4.8562 10 6 4.4330 0.7668 5.4361 11 6 4.7767 1.0520 6.8504 12 6 5.8965 0.4572 7.4306 13 6 6.2169 0.7279 8.7435 14 6 5.4185 1.5844 9.4926 15 8 5.7326 1.8450 10.7866 16 6 4.9869 2.7703 11.4231 17 1 4.1313 3.2071 10.9295 18 6 5.3184 3.1613 12.7114 19 7 6.3602 2.6289 13.3129 20 14 4.2846 4.4429 13.5936 21 1 3.1773 4.8817 12.7068 22 1 3.7215 3.8552 14.8357 23 1 5.1337 5.6111 13.9395 24 6 4.2984 2.1741 8.9181 25 6 3.9773 1.9109 7.6038 26 6 5.2311 -0.0915 4.6816 27 6 4.9064 -0.3532 3.3661 28 6 2.0015 -0.5954 1.2525 29 1 -0.3634 0.5158 -0.8889 30 1 -0.3633 -1.0277 -0.0023 31 1 -0.3633 0.5118 0.8912 32 1 1.4098 2.0211 0.6603 33 1 2.0078 1.7917 -1.0120 34 1 4.1482 1.1749 -0.2935 35 1 3.6937 2.0995 1.1699 36 1 2.1329 1.5519 3.0864 37 1 2.6892 2.0222 5.4361 38 1 6.5148 -0.2116 6.8502 39 1 7.0866 0.2709 9.1920 40 1 6.5923 2.9027 14.2140 41 1 3.6797 2.8396 9.5019 42 1 3.1072 2.3696 7.1578 43 1 6.1014 -0.5515 5.1260 44 1 5.5238 -1.0184 2.7807 45 1 2.0079 -1.6832 1.1836 46 1 1.4105 -0.2732 2.1099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243595530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:03:58 Heat of formation + Delta-G solvation = 7.567694 kcal Electronic energy + Delta-G solvation = -25413.113393 eV Core-core repulsion = 21846.063223 eV Total energy + Delta-G solvation = -3567.050171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.17551 -40.61088 -39.31368 -37.90604 -34.61588 -34.10573 -32.41937 -31.93245 -31.42446 -30.10854 -28.50258 -27.37348 -26.26870 -24.50095 -23.95697 -22.73196 -22.01786 -21.97403 -20.80957 -19.81910 -19.06171 -17.77718 -17.10292 -16.78039 -16.46842 -16.26481 -15.79763 -15.63400 -15.57467 -15.19622 -15.12449 -14.72743 -14.60309 -14.38950 -14.19667 -14.09165 -13.84363 -13.58632 -13.53155 -13.14159 -12.88647 -12.75867 -12.63186 -12.43155 -12.37967 -12.25347 -12.14305 -12.11000 -11.89535 -11.58826 -11.43626 -11.13143 -10.88720 -9.94444 -9.88157 -9.80709 -9.46982 -8.51821 -8.47989 -6.17469 -0.08384 0.54519 0.56263 1.06648 1.34324 1.43595 1.52666 2.15334 2.67161 2.97310 3.07400 3.26210 3.44639 3.67792 3.76835 3.87458 3.89875 3.93859 4.04708 4.18379 4.22434 4.28087 4.40660 4.44873 4.45471 4.53338 4.55709 4.59317 4.64871 4.75563 4.82824 4.91378 4.93896 5.00219 5.04190 5.08059 5.08806 5.15821 5.20503 5.21251 5.28931 5.40951 5.47615 5.64300 5.64528 5.74885 5.85553 5.92913 5.99079 6.03622 6.10206 6.17131 6.93781 7.72635 8.72263 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.002066 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.619540 B =13551.741213 C =14280.044170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.528 5.528 3 C 0.030 3.970 4 C -0.115 4.115 5 C -0.047 4.047 6 H 0.095 0.905 7 C -0.087 4.087 8 C -0.110 4.110 9 C -0.130 4.130 10 C -0.034 4.034 11 C -0.135 4.135 12 C -0.055 4.055 13 C -0.201 4.201 14 C 0.118 3.882 15 O -0.226 6.226 16 C -0.414 4.414 17 H 0.103 0.897 18 C -0.022 4.022 19 N -0.918 5.918 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.241 4.241 25 C -0.058 4.058 26 C -0.127 4.127 27 C -0.110 4.110 28 C 0.039 3.961 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.274 0.726 41 H 0.123 0.877 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.083 0.917 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -3.751 -26.987 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.252 5.252 3 C -0.097 4.097 4 C -0.153 4.153 5 C -0.066 4.066 6 H 0.113 0.887 7 C -0.087 4.087 8 C -0.128 4.128 9 C -0.148 4.148 10 C -0.034 4.034 11 C -0.136 4.136 12 C -0.073 4.073 13 C -0.221 4.221 14 C 0.067 3.933 15 O -0.132 6.132 16 C -0.490 4.490 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.555 5.555 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.260 4.260 25 C -0.076 4.076 26 C -0.145 4.145 27 C -0.128 4.128 28 C -0.089 4.089 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.083 0.917 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.102 0.898 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.010 -4.136 -27.131 28.885 hybrid contribution -0.493 0.994 1.872 2.176 sum -9.502 -3.142 -25.259 27.169 Atomic orbital electron populations 1.22550 0.87251 1.02682 1.01228 1.65396 1.09025 1.15840 1.34905 1.23188 0.95137 0.89819 1.01606 1.22412 0.96794 0.96675 0.99430 1.20835 0.97073 0.98091 0.90558 0.88691 1.19943 0.95566 0.97492 0.95695 1.20925 0.99897 0.98550 0.93399 1.21317 0.97053 1.00680 0.95760 1.18792 0.95722 0.97421 0.91515 1.18677 0.98283 1.02827 0.93809 1.21089 0.95917 0.97632 0.92672 1.20414 1.02124 1.04242 0.95285 1.20025 0.93955 0.94479 0.84805 1.83925 1.55112 1.54312 1.19881 1.21889 1.10519 1.18202 0.98399 0.87936 1.26618 0.98317 1.00573 0.96523 1.70181 1.27469 1.43421 1.14460 0.84516 0.77493 0.76169 0.77945 1.17431 1.19275 1.19302 1.21206 1.00178 1.07196 0.97465 1.21133 0.98595 0.95791 0.92097 1.21396 1.00041 0.98419 0.94652 1.21197 0.97085 0.99947 0.94530 1.23247 0.94181 1.00453 0.90979 0.90449 0.90858 0.95331 0.93769 0.89311 0.89994 0.91157 0.85458 0.85586 0.83037 0.86254 0.91719 0.85898 0.84098 0.84885 0.83845 0.89826 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.53 127.69 1.22 1.35 16 2 N -0.53 -7.63 5.66 -907.62 -5.14 -12.76 16 3 C 0.03 0.39 6.49 86.45 0.56 0.95 16 4 C -0.12 -1.51 6.43 31.49 0.20 -1.31 16 5 C -0.05 -0.67 3.27 -10.65 -0.03 -0.71 16 6 H 0.09 1.23 7.92 -2.39 -0.02 1.22 16 7 C -0.09 -1.58 4.75 -19.82 -0.09 -1.67 16 8 C -0.11 -2.20 8.14 22.24 0.18 -2.02 16 9 C -0.13 -3.15 9.43 22.49 0.21 -2.94 16 10 C -0.03 -0.95 5.88 -20.04 -0.12 -1.06 16 11 C -0.14 -4.52 5.88 -20.02 -0.12 -4.64 16 12 C -0.06 -1.91 9.42 22.46 0.21 -1.70 16 13 C -0.20 -8.60 9.98 22.36 0.22 -8.38 16 14 C 0.12 5.91 6.65 22.64 0.15 6.06 16 15 O -0.23 -13.59 9.75 -21.89 -0.21 -13.80 16 16 C -0.41 -24.00 9.48 67.92 0.64 -23.36 16 17 H 0.10 5.45 5.19 -2.91 -0.02 5.44 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 19 N -0.92 -55.99 13.67 21.61 0.30 -55.70 16 20 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.24 -10.59 9.15 22.36 0.20 -10.39 16 25 C -0.06 -2.09 9.42 22.46 0.21 -1.87 16 26 C -0.13 -2.95 9.43 22.49 0.21 -2.74 16 27 C -0.11 -2.09 9.66 22.24 0.21 -1.87 16 28 C 0.04 0.58 5.93 86.45 0.51 1.09 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.03 0.34 7.97 -2.39 -0.02 0.32 16 32 H 0.04 0.56 7.97 -2.39 -0.02 0.54 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.00 7.35 -2.39 -0.02 0.99 16 36 H 0.13 2.15 7.67 -2.91 -0.02 2.13 16 37 H 0.13 2.84 6.20 -2.91 -0.02 2.83 16 38 H 0.15 4.05 6.20 -2.91 -0.02 4.03 16 39 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 41 H 0.12 5.43 5.62 -2.91 -0.02 5.41 16 42 H 0.14 4.09 6.20 -2.91 -0.02 4.08 16 43 H 0.13 2.74 6.20 -2.91 -0.02 2.72 16 44 H 0.14 2.00 7.96 -2.91 -0.02 1.98 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.04 0.72 6.57 -2.39 -0.02 0.70 16 Total: -1.00 -69.32 370.47 3.02 -66.30 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.99 Total: 27.42 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 5.06 Total: -56.01 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -4.84 Total: -68.46 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.21 Total: -13.80 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.32 3.02 -66.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243595530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.869 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds