Wall clock time and date at job start Sat Apr 11 2020 01:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35604 * 116.99973 * 2 1 4 4 C 1.38515 * 120.08415 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.31438 * 179.76020 * 4 3 2 6 6 C 1.39977 * 120.46451 * 0.52330 * 5 4 3 7 7 C 1.48289 * 119.92073 * 179.76092 * 6 5 4 8 8 C 1.39288 * 120.16159 * 123.91926 * 7 6 5 9 9 C 1.38016 * 119.95145 * 180.02562 * 8 7 6 10 10 C 1.38417 * 120.27562 * 359.74077 * 9 8 7 11 11 C 1.38146 * 120.32705 * 0.51254 * 10 9 8 12 12 C 1.38764 * 120.04375 * 359.49242 * 11 10 9 13 13 N 1.39489 * 120.14049 * 180.23129 * 12 11 10 14 14 C 1.48534 * 110.99520 * 358.77547 * 13 12 11 15 15 C 1.54940 * 103.22503 * 159.72114 * 14 13 12 16 16 C 1.54594 * 102.92230 * 322.58452 * 15 14 13 17 17 C 1.47899 * 110.99940 * 116.16829 * 13 12 11 18 18 C 1.38638 * 120.15158 * 359.47761 * 6 5 4 19 19 C 1.40517 * 119.68907 * 0.25960 * 18 6 5 20 20 C 1.41176 * 120.22865 * 180.02562 * 19 18 6 21 21 H 1.08008 * 120.00219 * 150.80042 * 20 19 18 22 22 C 1.39895 * 120.00152 * 330.79732 * 20 19 18 23 23 N 1.30882 * 119.99768 * 349.58699 * 22 20 19 24 24 Si 1.86807 * 120.00210 * 169.58298 * 22 20 19 25 25 H 1.48498 * 109.46820 * 90.00109 * 24 22 20 26 26 H 1.48493 * 109.47345 * 210.00318 * 24 22 20 27 27 H 1.48498 * 109.46979 * 330.00509 * 24 22 20 28 28 H 1.08996 * 109.47450 * 299.99756 * 1 2 3 29 29 H 1.09001 * 109.47487 * 59.99924 * 1 2 3 30 30 H 1.09007 * 109.47288 * 179.97438 * 1 2 3 31 31 H 1.08009 * 119.83941 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.76487 * 180.27911 * 5 4 3 33 33 H 1.08002 * 120.02302 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.86068 * 179.97438 * 9 8 7 35 35 H 1.08004 * 119.83508 * 180.27972 * 10 9 8 36 36 H 1.08001 * 119.97369 * 179.76617 * 11 10 9 37 37 H 1.09004 * 110.66585 * 278.15206 * 14 13 12 38 38 H 1.08994 * 110.66959 * 41.28840 * 14 13 12 39 39 H 1.09000 * 110.72521 * 204.22631 * 15 14 13 40 40 H 1.09006 * 110.72496 * 80.94220 * 15 14 13 41 41 H 1.08998 * 110.30804 * 263.04432 * 16 15 14 42 42 H 1.08997 * 110.31120 * 140.87655 * 16 15 14 43 43 H 1.09001 * 109.92134 * 333.51193 * 17 13 12 44 44 H 1.09004 * 109.91804 * 94.80748 * 17 13 12 45 45 H 1.08002 * 120.15715 * 180.28236 * 18 6 5 46 46 H 0.97006 * 119.99775 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9136 3.6034 0.0044 6 6 3.3104 3.6936 -0.0009 7 6 3.9657 5.0239 -0.0008 8 6 4.8818 5.3527 0.9956 9 6 5.4887 6.5923 0.9918 10 6 5.1951 7.5099 -0.0020 11 6 4.2845 7.1978 -0.9928 12 6 3.6663 5.9555 -1.0019 13 7 2.7501 5.6364 -2.0042 14 6 2.5639 6.7766 -2.9377 15 6 1.9815 6.1045 -4.2064 16 6 2.7474 4.7631 -4.2697 17 6 3.2401 4.5132 -2.8322 18 6 4.0826 2.5422 -0.0004 19 6 3.4565 1.2843 0.0000 20 6 4.2318 0.1044 0.0011 21 1 3.8457 -0.7950 0.4578 22 6 5.5000 0.1002 -0.5893 23 7 5.8864 1.1172 -1.3170 24 14 6.6420 -1.3567 -0.3391 25 1 6.4118 -2.3562 -1.4129 26 1 8.0523 -0.8943 -0.3873 27 1 6.3697 -1.9779 0.9820 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2134 2.3131 -0.0005 32 1 1.3180 4.5043 0.0086 33 1 5.1163 4.6385 1.7710 34 1 6.1984 6.8458 1.7653 35 1 5.6776 8.4762 -0.0007 36 1 4.0568 7.9196 -1.7633 37 1 1.8586 7.4991 -2.5268 38 1 3.5191 7.2528 -3.1587 39 1 2.1862 6.7076 -5.0910 40 1 0.9109 5.9325 -4.0949 41 1 3.5942 4.8428 -4.9513 42 1 2.0804 3.9612 -4.5859 43 1 4.3296 4.4851 -2.8127 44 1 2.8350 3.5725 -2.4592 45 1 5.1604 2.6118 0.0001 46 1 6.7656 1.1141 -1.7268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244180416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:11 Heat of formation + Delta-G solvation = 20.827010 kcal Electronic energy + Delta-G solvation = -27808.934585 eV Core-core repulsion = 24242.459381 eV Total energy + Delta-G solvation = -3566.475204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07374 -38.52592 -37.31582 -35.98269 -33.65303 -32.31720 -31.33724 -29.72385 -28.69745 -28.30652 -27.35721 -26.35537 -25.02512 -22.89010 -22.31748 -20.91441 -20.49415 -20.12235 -19.49116 -17.49608 -16.84927 -16.38435 -15.77445 -15.47443 -15.07120 -14.75699 -14.64327 -14.41400 -14.13613 -13.75509 -13.26937 -13.00241 -12.90144 -12.72125 -12.62070 -12.28616 -12.02583 -11.74974 -11.66283 -11.51888 -11.26165 -11.12496 -11.09061 -10.97216 -10.86708 -10.70877 -10.67177 -10.41979 -10.27415 -9.80718 -9.76292 -9.41569 -9.16436 -9.02242 -8.34575 -7.49076 -7.37383 -6.75200 -6.54452 -4.19937 1.76283 1.83989 2.83067 2.96073 3.13739 3.18696 3.24577 4.03593 4.10908 4.40201 4.52812 4.71839 4.83208 4.90654 5.15929 5.28868 5.34644 5.48172 5.54560 5.63054 5.66615 5.77643 5.83001 5.84468 5.85901 5.91872 5.97124 6.00488 6.03681 6.17443 6.20406 6.23606 6.39743 6.42701 6.47062 6.62552 6.73756 6.84186 6.94097 7.01502 7.17117 7.21344 7.31110 7.41060 7.45025 7.70694 7.76535 7.86976 8.08404 8.24754 8.43540 8.75795 8.92965 9.10928 10.33825 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.005068 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.508776 B = 5523.546193 C = 6372.095571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.023 3.977 4 C -0.188 4.188 5 C -0.155 4.155 6 C -0.071 4.071 7 C -0.018 4.018 8 C -0.094 4.094 9 C -0.145 4.145 10 C -0.116 4.116 11 C -0.175 4.175 12 C 0.104 3.896 13 N -0.459 5.459 14 C 0.027 3.973 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.049 3.951 18 C -0.115 4.115 19 C 0.090 3.910 20 C -0.448 4.448 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.809 5.809 24 Si 0.908 3.092 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.128 0.872 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 9.135 -2.643 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.021 4.021 4 C -0.207 4.207 5 C -0.175 4.175 6 C -0.071 4.071 7 C -0.020 4.020 8 C -0.113 4.113 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.196 4.196 12 C 0.006 3.994 13 N -0.174 5.174 14 C -0.100 4.100 15 C -0.160 4.160 16 C -0.169 4.169 17 C -0.076 4.076 18 C -0.135 4.135 19 C 0.088 3.912 20 C -0.479 4.479 21 H 0.096 0.904 22 C -0.143 4.143 23 N -0.436 5.436 24 Si 0.733 3.267 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.145 0.855 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.600 8.834 -2.584 9.883 hybrid contribution 0.958 -0.197 -0.326 1.031 sum -2.642 8.636 -2.910 9.489 Atomic orbital electron populations 1.22728 0.81808 1.01650 0.99931 1.85965 1.18157 1.28438 1.90040 1.19422 0.92470 0.82550 1.07666 1.20559 0.97372 0.92784 1.10029 1.20132 0.92829 0.95187 1.09354 1.18260 0.92779 0.90357 1.05721 1.18755 0.96245 0.93826 0.93157 1.21192 0.95902 0.96141 0.98051 1.20926 1.01508 0.94378 0.99542 1.20832 0.98389 0.98992 0.95247 1.21194 0.99656 0.97828 1.00916 1.19064 0.91995 0.93805 0.94517 1.61784 1.40291 1.05676 1.09674 1.23435 1.00021 0.94009 0.92534 1.22469 1.00506 0.96202 0.96831 1.22431 0.99916 0.97638 0.96918 1.22894 0.98816 0.95364 0.90554 1.21222 0.99392 0.89373 1.03503 1.16939 0.87145 0.93898 0.93263 1.19318 0.98929 0.97271 1.32361 0.90366 1.25795 0.98193 0.97081 0.93218 1.69795 1.19685 1.30008 1.24111 0.86317 0.79004 0.81574 0.79814 1.19724 1.20387 1.18679 0.94243 0.94160 0.90124 0.88645 0.88648 0.85934 0.86788 0.86974 0.86091 0.90120 0.92762 0.91318 0.90837 0.91741 0.90971 0.93072 0.88272 0.85457 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.20 9.82 -18.51 -0.18 -7.38 16 3 C 0.02 0.57 6.72 -38.28 -0.26 0.32 16 4 C -0.19 -4.19 9.01 -39.56 -0.36 -4.54 16 5 C -0.16 -3.42 8.10 -39.01 -0.32 -3.74 16 6 C -0.07 -1.59 3.43 -104.96 -0.36 -1.95 16 7 C -0.02 -0.36 5.28 -104.72 -0.55 -0.91 16 8 C -0.09 -1.74 9.60 -39.27 -0.38 -2.11 16 9 C -0.14 -2.27 10.03 -39.60 -0.40 -2.67 16 10 C -0.12 -1.71 10.03 -39.55 -0.40 -2.11 16 11 C -0.18 -2.76 8.87 -39.42 -0.35 -3.11 16 12 C 0.10 1.89 5.23 -83.52 -0.44 1.46 16 13 N -0.46 -7.92 4.32 -166.92 -0.72 -8.64 16 14 C 0.03 0.37 5.47 -1.90 -0.01 0.36 16 15 C -0.12 -1.49 7.06 -24.87 -0.18 -1.66 16 16 C -0.13 -1.88 6.93 -25.37 -0.18 -2.05 16 17 C 0.05 0.89 5.42 -2.75 -0.01 0.87 16 18 C -0.12 -2.88 8.19 -38.58 -0.32 -3.20 16 19 C 0.09 2.38 5.56 -106.72 -0.59 1.78 16 20 C -0.45 -12.04 8.68 -37.85 -0.33 -12.37 16 21 H 0.08 2.11 7.69 -52.48 -0.40 1.70 16 22 C 0.07 1.82 5.25 -17.34 -0.09 1.73 16 23 N -0.81 -20.77 10.85 55.55 0.60 -20.17 16 24 Si 0.91 19.23 29.57 -169.99 -5.03 14.20 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 28 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.88 6.27 -52.48 -0.33 1.55 16 32 H 0.10 2.03 8.02 -52.48 -0.42 1.61 16 33 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.12 1.62 5.63 -52.49 -0.30 1.32 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.70 6.07 -51.93 -0.32 0.38 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.02 7.76 -51.93 -0.40 0.62 16 44 H 0.10 2.15 6.52 -51.93 -0.34 1.81 16 45 H 0.13 3.36 6.23 -52.49 -0.33 3.03 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -28.15 365.38 -10.90 -39.06 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.57 Total: 9.75 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -4.51 Total: -32.33 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: -0.12 Total: -28.80 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.15 -10.90 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244180416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.884 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds