Wall clock time and date at job start Sat Apr 11 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35604 * 116.99973 * 2 1 4 4 C 1.38515 * 120.08415 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.31438 * 179.76020 * 4 3 2 6 6 C 1.39977 * 120.46451 * 0.52330 * 5 4 3 7 7 C 1.48289 * 119.92073 * 179.76092 * 6 5 4 8 8 C 1.39288 * 120.16159 * 123.91926 * 7 6 5 9 9 C 1.38016 * 119.95145 * 180.02562 * 8 7 6 10 10 C 1.38417 * 120.27562 * 359.74077 * 9 8 7 11 11 C 1.38146 * 120.32705 * 0.51254 * 10 9 8 12 12 C 1.38764 * 120.04375 * 359.49242 * 11 10 9 13 13 N 1.39489 * 120.14049 * 180.23129 * 12 11 10 14 14 C 1.48534 * 110.99520 * 358.77547 * 13 12 11 15 15 C 1.54940 * 103.22503 * 159.72114 * 14 13 12 16 16 C 1.54594 * 102.92230 * 322.58452 * 15 14 13 17 17 C 1.47899 * 110.99940 * 116.16829 * 13 12 11 18 18 C 1.38638 * 120.15158 * 359.47761 * 6 5 4 19 19 C 1.40517 * 119.68907 * 0.25960 * 18 6 5 20 20 C 1.41176 * 120.22865 * 180.02562 * 19 18 6 21 21 H 1.08008 * 120.00219 * 150.80042 * 20 19 18 22 22 C 1.39895 * 120.00152 * 330.79732 * 20 19 18 23 23 N 1.30882 * 119.99768 * 349.58699 * 22 20 19 24 24 Si 1.86807 * 120.00210 * 169.58298 * 22 20 19 25 25 H 1.48498 * 109.46820 * 90.00109 * 24 22 20 26 26 H 1.48493 * 109.47345 * 210.00318 * 24 22 20 27 27 H 1.48498 * 109.46979 * 330.00509 * 24 22 20 28 28 H 1.08996 * 109.47450 * 299.99756 * 1 2 3 29 29 H 1.09001 * 109.47487 * 59.99924 * 1 2 3 30 30 H 1.09007 * 109.47288 * 179.97438 * 1 2 3 31 31 H 1.08009 * 119.83941 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.76487 * 180.27911 * 5 4 3 33 33 H 1.08002 * 120.02302 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.86068 * 179.97438 * 9 8 7 35 35 H 1.08004 * 119.83508 * 180.27972 * 10 9 8 36 36 H 1.08001 * 119.97369 * 179.76617 * 11 10 9 37 37 H 1.09004 * 110.66585 * 278.15206 * 14 13 12 38 38 H 1.08994 * 110.66959 * 41.28840 * 14 13 12 39 39 H 1.09000 * 110.72521 * 204.22631 * 15 14 13 40 40 H 1.09006 * 110.72496 * 80.94220 * 15 14 13 41 41 H 1.08998 * 110.30804 * 263.04432 * 16 15 14 42 42 H 1.08997 * 110.31120 * 140.87655 * 16 15 14 43 43 H 1.09001 * 109.92134 * 333.51193 * 17 13 12 44 44 H 1.09004 * 109.91804 * 94.80748 * 17 13 12 45 45 H 1.08002 * 120.15715 * 180.28236 * 18 6 5 46 46 H 0.97006 * 119.99775 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9136 3.6034 0.0044 6 6 3.3104 3.6936 -0.0009 7 6 3.9657 5.0239 -0.0008 8 6 4.8818 5.3527 0.9956 9 6 5.4887 6.5923 0.9918 10 6 5.1951 7.5099 -0.0020 11 6 4.2845 7.1978 -0.9928 12 6 3.6663 5.9555 -1.0019 13 7 2.7501 5.6364 -2.0042 14 6 2.5639 6.7766 -2.9377 15 6 1.9815 6.1045 -4.2064 16 6 2.7474 4.7631 -4.2697 17 6 3.2401 4.5132 -2.8322 18 6 4.0826 2.5422 -0.0004 19 6 3.4565 1.2843 0.0000 20 6 4.2318 0.1044 0.0011 21 1 3.8457 -0.7950 0.4578 22 6 5.5000 0.1002 -0.5893 23 7 5.8864 1.1172 -1.3170 24 14 6.6420 -1.3567 -0.3391 25 1 6.4118 -2.3562 -1.4129 26 1 8.0523 -0.8943 -0.3873 27 1 6.3697 -1.9779 0.9820 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2134 2.3131 -0.0005 32 1 1.3180 4.5043 0.0086 33 1 5.1163 4.6385 1.7710 34 1 6.1984 6.8458 1.7653 35 1 5.6776 8.4762 -0.0007 36 1 4.0568 7.9196 -1.7633 37 1 1.8586 7.4991 -2.5268 38 1 3.5191 7.2528 -3.1587 39 1 2.1862 6.7076 -5.0910 40 1 0.9109 5.9325 -4.0949 41 1 3.5942 4.8428 -4.9513 42 1 2.0804 3.9612 -4.5859 43 1 4.3296 4.4851 -2.8127 44 1 2.8350 3.5725 -2.4592 45 1 5.1604 2.6118 0.0001 46 1 6.7656 1.1141 -1.7268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244180416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:09 Heat of formation + Delta-G solvation = 7.229275 kcal Electronic energy + Delta-G solvation = -27809.524227 eV Core-core repulsion = 24242.459381 eV Total energy + Delta-G solvation = -3567.064846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.42122 -40.24661 -38.60922 -37.68681 -35.51825 -33.55462 -32.84367 -31.58160 -30.01190 -29.63644 -28.80871 -27.92925 -26.87588 -24.14968 -23.76767 -22.72439 -21.88192 -21.40399 -20.96339 -19.25625 -18.30483 -18.10337 -17.18945 -16.93352 -16.55941 -16.31885 -16.22931 -15.92896 -15.47041 -15.16457 -14.78599 -14.58193 -14.41406 -14.25831 -13.97689 -13.75554 -13.53534 -13.19265 -13.14989 -12.96112 -12.82799 -12.74145 -12.51138 -12.34206 -12.27241 -12.13863 -12.08771 -11.98000 -11.56617 -11.42898 -11.36362 -11.21732 -11.03631 -10.37180 -9.74095 -9.29756 -8.88900 -8.54824 -8.33623 -6.19781 0.35644 0.52425 1.02209 1.17892 1.37173 1.48883 1.52130 2.24975 2.74511 2.85083 2.93245 3.15472 3.69348 3.69691 3.78960 4.04109 4.06566 4.08391 4.24782 4.34968 4.38478 4.44610 4.48552 4.51469 4.59944 4.62671 4.66836 4.72812 4.74092 4.86415 4.93423 4.98034 5.04576 5.08218 5.15800 5.17970 5.22902 5.26836 5.39846 5.42933 5.53621 5.61201 5.70061 5.87642 5.89784 5.95357 6.10493 6.23153 6.35176 6.49494 6.56027 6.85130 6.98375 7.25941 8.45231 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.005068 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.508776 B = 5523.546193 C = 6372.095571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.010 3.990 4 C -0.187 4.187 5 C -0.150 4.150 6 C -0.060 4.060 7 C -0.060 4.060 8 C -0.113 4.113 9 C -0.143 4.143 10 C -0.104 4.104 11 C -0.173 4.173 12 C 0.092 3.908 13 N -0.472 5.472 14 C 0.025 3.975 15 C -0.111 4.111 16 C -0.128 4.128 17 C 0.059 3.941 18 C -0.129 4.129 19 C 0.054 3.946 20 C -0.485 4.485 21 H 0.064 0.936 22 C 0.033 3.967 23 N -0.836 5.836 24 Si 0.976 3.024 25 H -0.266 1.266 26 H -0.267 1.267 27 H -0.263 1.263 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 11.921 -3.551 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C -0.035 4.035 4 C -0.206 4.206 5 C -0.170 4.170 6 C -0.060 4.060 7 C -0.062 4.062 8 C -0.131 4.131 9 C -0.162 4.162 10 C -0.122 4.122 11 C -0.193 4.193 12 C -0.005 4.005 13 N -0.188 5.188 14 C -0.101 4.101 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.067 4.067 18 C -0.149 4.149 19 C 0.052 3.948 20 C -0.516 4.516 21 H 0.082 0.918 22 C -0.179 4.179 23 N -0.464 5.464 24 Si 0.798 3.202 25 H -0.191 1.191 26 H -0.191 1.191 27 H -0.187 1.187 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.011 11.636 -3.490 12.793 hybrid contribution 0.975 -0.928 -0.024 1.346 sum -3.036 10.708 -3.514 11.671 Atomic orbital electron populations 1.23071 0.78715 1.04117 1.00897 1.85906 1.21432 1.28046 1.90080 1.19525 0.92284 0.83809 1.07848 1.20829 0.98710 0.92069 1.08965 1.20329 0.92845 0.95535 1.08252 1.18438 0.93006 0.91113 1.03483 1.18826 0.98334 0.93485 0.95510 1.21259 0.96448 0.97570 0.97863 1.21252 1.01216 0.93123 1.00585 1.21333 0.97090 1.00132 0.93634 1.21571 0.98910 0.97088 1.01761 1.19226 0.92615 0.94458 0.94235 1.61695 1.40038 1.06812 1.10239 1.23605 1.01158 0.93103 0.92245 1.22474 1.00118 0.94705 0.97544 1.22420 1.00651 0.99296 0.94260 1.22608 0.96644 0.94286 0.93165 1.21033 0.98442 0.90213 1.05254 1.17318 0.88663 0.94405 0.94411 1.19412 1.00623 0.97167 1.34379 0.91791 1.26554 0.99058 0.99866 0.92421 1.69883 1.20180 1.31650 1.24678 0.85292 0.77212 0.78117 0.79587 1.19109 1.19100 1.18679 0.92965 0.93249 0.87078 0.85858 0.87525 0.87263 0.83908 0.82814 0.83035 0.88415 0.91528 0.88087 0.90557 0.90530 0.91210 0.96053 0.92893 0.87794 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.02 16 2 O -0.34 -16.26 9.82 -89.14 -0.88 -17.14 16 3 C 0.01 0.51 6.72 23.11 0.16 0.67 16 4 C -0.19 -8.51 9.01 22.29 0.20 -8.31 16 5 C -0.15 -6.83 8.10 22.64 0.18 -6.64 16 6 C -0.06 -2.85 3.43 -20.09 -0.07 -2.92 16 7 C -0.06 -2.48 5.28 -19.93 -0.11 -2.59 16 8 C -0.11 -4.26 9.60 22.47 0.22 -4.04 16 9 C -0.14 -4.22 10.03 22.26 0.22 -4.00 16 10 C -0.10 -2.68 10.03 22.29 0.22 -2.45 16 11 C -0.17 -4.92 8.87 22.37 0.20 -4.72 16 12 C 0.09 3.31 5.23 38.47 0.20 3.51 16 13 N -0.47 -15.99 4.32 -682.02 -2.95 -18.94 16 14 C 0.02 0.60 5.47 86.65 0.47 1.07 16 15 C -0.11 -2.36 7.06 31.80 0.22 -2.13 16 16 C -0.13 -3.58 6.93 31.47 0.22 -3.36 16 17 C 0.06 2.21 5.42 86.45 0.47 2.68 16 18 C -0.13 -7.01 8.19 22.92 0.19 -6.82 16 19 C 0.05 3.08 5.56 -21.23 -0.12 2.96 16 20 C -0.48 -27.94 8.68 23.39 0.20 -27.74 16 21 H 0.06 3.71 7.69 -2.91 -0.02 3.69 16 22 C 0.03 1.76 5.25 85.24 0.45 2.21 16 23 N -0.84 -45.67 10.85 21.82 0.24 -45.44 16 24 Si 0.98 41.15 29.57 68.60 2.03 43.18 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 28 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 29 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 30 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 31 H 0.12 4.79 6.27 -2.91 -0.02 4.77 16 32 H 0.11 4.56 8.02 -2.91 -0.02 4.53 16 33 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.15 3.34 5.63 -2.91 -0.02 3.32 16 37 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.07 1.44 6.07 -2.39 -0.01 1.43 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.02 0.90 7.76 -2.39 -0.02 0.88 16 44 H 0.05 2.46 6.52 -2.38 -0.02 2.44 16 45 H 0.10 6.01 6.23 -2.91 -0.02 5.99 16 46 H 0.28 14.10 8.30 -92.70 -0.77 13.33 16 Total: -1.00 -67.58 365.38 4.07 -63.51 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.98 Total: 35.44 kcal Atomic # 6 Polarization: -65.26 SS G_CDS: 4.65 Total: -60.62 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -2.71 Total: -64.37 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.88 Total: -17.14 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -67.58 4.07 -63.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244180416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.741 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds