Wall clock time and date at job start Sat Apr 11 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35682 * 117.00129 * 2 1 4 4 C 1.37904 * 120.18802 * 359.72763 * 3 2 1 5 5 C 1.39732 * 119.93086 * 179.77267 * 4 3 2 6 6 C 1.47839 * 119.84823 * 180.23008 * 5 4 3 7 7 C 1.39577 * 120.18925 * 304.82039 * 6 5 4 8 8 C 1.37870 * 119.92730 * 179.72322 * 7 6 5 9 9 C 1.38546 * 120.32204 * 0.55535 * 8 7 6 10 10 C 1.38111 * 120.38261 * 359.72316 * 9 8 7 11 11 C 1.38788 * 120.06480 * 359.97438 * 10 9 8 12 12 N 1.39258 * 120.16204 * 179.97438 * 11 10 9 13 13 C 1.48535 * 110.99904 * 359.90680 * 12 11 10 14 14 C 1.54931 * 103.22437 * 159.72501 * 13 12 11 15 15 C 1.54590 * 102.92546 * 322.58716 * 14 13 12 16 16 C 1.47892 * 111.00384 * 117.30860 * 12 11 10 17 17 C 1.40160 * 120.29909 * 0.52465 * 5 4 3 18 18 C 1.36081 * 120.38800 * 359.70160 * 17 5 4 19 19 C 1.40928 * 120.06081 * 0.04939 * 18 17 5 20 20 C 1.40807 * 120.15071 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00068 * 152.19209 * 20 19 18 22 22 C 1.39962 * 120.00097 * 332.18943 * 20 19 18 23 23 N 1.30870 * 119.99811 * 347.06266 * 22 20 19 24 24 Si 1.86796 * 120.00260 * 167.06140 * 22 20 19 25 25 H 1.48490 * 109.47249 * 90.00166 * 24 22 20 26 26 H 1.48501 * 109.46877 * 210.00090 * 24 22 20 27 27 H 1.48505 * 109.47163 * 329.99778 * 24 22 20 28 28 H 1.08995 * 109.47248 * 59.99581 * 1 2 3 29 29 H 1.09006 * 109.47019 * 299.99607 * 1 2 3 30 30 H 1.08997 * 109.46983 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.03535 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.03647 * 0.02562 * 7 6 5 33 33 H 1.08005 * 119.84311 * 180.27982 * 8 7 6 34 34 H 1.07992 * 119.80645 * 179.70188 * 9 8 7 35 35 H 1.08002 * 119.96850 * 179.97438 * 10 9 8 36 36 H 1.09000 * 110.66756 * 278.16415 * 13 12 11 37 37 H 1.09000 * 110.66293 * 41.28988 * 13 12 11 38 38 H 1.09003 * 110.72401 * 204.22993 * 14 13 12 39 39 H 1.08996 * 110.72570 * 80.95239 * 14 13 12 40 40 H 1.08998 * 110.31184 * 263.04348 * 15 14 13 41 41 H 1.09006 * 110.31187 * 140.87528 * 15 14 13 42 42 H 1.08996 * 109.91806 * 333.50807 * 16 12 11 43 43 H 1.09002 * 109.92041 * 94.80416 * 16 12 11 44 44 H 1.08001 * 119.80547 * 179.72860 * 17 5 4 45 45 H 1.07999 * 119.96694 * 180.02562 * 18 17 5 46 46 H 0.96994 * 120.00291 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2978 2.3680 -0.0057 5 6 1.9377 3.6101 -0.0008 6 6 1.1348 4.8515 -0.0018 7 6 0.1792 5.0685 -0.9956 8 6 -0.5706 6.2255 -0.9881 9 6 -0.3725 7.1809 -0.0044 10 6 0.5736 6.9822 0.9819 11 6 1.3329 5.8205 0.9932 12 7 2.2877 5.6183 1.9865 13 6 2.3294 6.7676 2.9266 14 6 3.0028 6.1698 4.1874 15 6 2.4192 4.7395 4.2460 16 6 1.9541 4.4358 2.8097 17 6 3.3373 3.6845 -0.0013 18 6 4.0870 2.5488 -0.0004 19 6 3.4580 1.2877 0.0000 20 6 4.2319 0.1114 0.0004 21 1 3.8375 -0.7943 0.4371 22 6 5.5122 0.1157 -0.5650 23 7 5.8942 1.1202 -1.3118 24 14 6.6757 -1.3121 -0.2537 25 1 6.4856 -2.3437 -1.3048 26 1 8.0779 -0.8242 -0.2868 27 1 6.3886 -1.9033 1.0779 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2190 2.3157 -0.0097 32 1 0.0237 4.3286 -1.7670 33 1 -1.3128 6.3900 -1.7552 34 1 -0.9611 8.0863 -0.0092 35 1 0.7227 7.7316 1.7452 36 1 2.9314 7.5784 2.5166 37 1 1.3215 7.1135 3.1561 38 1 2.7267 6.7358 5.0772 39 1 4.0859 6.1400 4.0688 40 1 1.5737 4.7037 4.9329 41 1 3.1874 4.0297 4.5530 42 1 0.8776 4.2656 2.7961 43 1 2.4763 3.5584 2.4281 44 1 3.8237 4.6488 -0.0020 45 1 5.1651 2.6140 -0.0003 46 1 6.7816 1.1235 -1.7035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244182073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:25 Heat of formation + Delta-G solvation = 20.608737 kcal Electronic energy + Delta-G solvation = -27623.192194 eV Core-core repulsion = 24056.707525 eV Total energy + Delta-G solvation = -3566.484669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.13613 -38.53068 -37.32497 -36.01116 -33.85948 -32.38262 -31.37278 -29.15557 -28.84218 -28.49534 -27.88900 -26.49802 -24.96018 -22.95314 -22.21269 -20.71366 -20.58933 -20.10820 -19.75038 -17.48576 -17.17065 -16.25835 -15.84866 -15.40154 -15.10209 -14.76972 -14.57565 -14.39969 -14.10558 -14.04233 -13.56055 -13.02135 -12.90390 -12.85172 -12.60935 -12.30237 -12.10994 -11.86447 -11.63707 -11.49373 -11.28602 -11.19955 -11.14257 -11.03324 -10.86725 -10.77036 -10.74058 -10.45612 -10.32699 -9.86328 -9.66726 -9.50598 -9.18027 -9.09012 -8.41553 -7.58327 -7.23073 -6.91686 -6.66195 -4.23402 1.69376 1.77995 2.76299 3.07499 3.09578 3.13812 3.20345 3.95567 4.05692 4.32493 4.53618 4.65790 4.77505 4.83575 5.10590 5.22347 5.30104 5.43307 5.45887 5.59633 5.62524 5.76120 5.77199 5.82340 5.84501 5.88070 5.90710 5.93166 5.98673 6.13465 6.15644 6.20035 6.27906 6.39505 6.50814 6.60517 6.63091 6.79280 6.94869 6.96761 7.08438 7.16870 7.26420 7.39387 7.41372 7.69867 7.81645 7.81990 8.13395 8.22643 8.44285 8.71448 8.84457 9.08521 10.20503 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.004371 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.062132 B = 6405.001352 C = 7278.493214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.006 3.994 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.004 4.004 7 C -0.106 4.106 8 C -0.144 4.144 9 C -0.122 4.122 10 C -0.172 4.172 11 C 0.096 3.904 12 N -0.456 5.456 13 C 0.027 3.973 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.048 3.952 17 C -0.075 4.075 18 C -0.152 4.152 19 C 0.107 3.893 20 C -0.438 4.438 21 H 0.081 0.919 22 C 0.071 3.929 23 N -0.794 5.794 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.261 1.261 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 8.091 6.340 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.228 6.228 3 C -0.038 4.038 4 C -0.175 4.175 5 C -0.161 4.161 6 C -0.006 4.006 7 C -0.125 4.125 8 C -0.162 4.162 9 C -0.141 4.141 10 C -0.193 4.193 11 C -0.002 4.002 12 N -0.171 5.171 13 C -0.100 4.100 14 C -0.161 4.161 15 C -0.170 4.170 16 C -0.077 4.077 17 C -0.094 4.094 18 C -0.171 4.171 19 C 0.104 3.896 20 C -0.467 4.467 21 H 0.100 0.900 22 C -0.146 4.146 23 N -0.419 5.419 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.142 0.858 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.701 7.865 5.986 11.941 hybrid contribution -0.501 -0.212 0.162 0.568 sum -7.202 7.653 6.148 12.175 Atomic orbital electron populations 1.22703 0.81907 1.01601 0.99823 1.85973 1.18033 1.28261 1.90489 1.19067 0.92312 0.82501 1.09965 1.20586 0.96940 0.91924 1.08082 1.17628 0.92360 0.89329 1.16784 1.18708 0.95323 0.94031 0.92531 1.21225 0.96134 0.97148 0.97946 1.20914 1.00906 0.94936 0.99493 1.20816 0.98765 0.98910 0.95615 1.21194 0.98055 0.99129 1.00927 1.19135 0.91418 0.94903 0.94724 1.61654 1.41932 1.03624 1.09880 1.23439 0.99722 0.94325 0.92466 1.22469 1.01024 0.95715 0.96851 1.22448 1.00739 0.97217 0.96634 1.22894 0.99457 0.94438 0.90920 1.20370 0.91969 0.97307 0.99728 1.20784 0.99716 0.90393 1.06227 1.17121 0.87236 0.94103 0.91150 1.19437 0.98026 0.97282 1.31993 0.90044 1.25928 0.98505 0.97169 0.92996 1.69823 1.19621 1.30094 1.22394 0.86267 0.78942 0.81213 0.80065 1.19521 1.20163 1.18467 0.94255 0.94396 0.90137 0.88830 0.86329 0.86981 0.87065 0.86161 0.89992 0.92849 0.91283 0.90597 0.91852 0.90707 0.93827 0.88186 0.88825 0.85812 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.18 9.81 -18.75 -0.18 -7.37 16 3 C 0.01 0.13 6.71 -38.45 -0.26 -0.12 16 4 C -0.16 -3.44 8.57 -39.15 -0.34 -3.77 16 5 C -0.16 -3.44 3.47 -104.69 -0.36 -3.81 16 6 C 0.00 -0.08 5.28 -104.70 -0.55 -0.63 16 7 C -0.11 -1.84 9.60 -39.22 -0.38 -2.21 16 8 C -0.14 -2.13 10.03 -39.60 -0.40 -2.53 16 9 C -0.12 -1.72 10.03 -39.51 -0.40 -2.12 16 10 C -0.17 -2.59 8.86 -39.42 -0.35 -2.94 16 11 C 0.10 1.67 5.24 -83.51 -0.44 1.23 16 12 N -0.46 -7.56 4.28 -166.90 -0.71 -8.27 16 13 C 0.03 0.36 5.43 -1.90 -0.01 0.35 16 14 C -0.12 -1.42 7.06 -24.88 -0.18 -1.60 16 15 C -0.13 -1.72 6.93 -25.38 -0.18 -1.90 16 16 C 0.05 0.79 5.36 -2.76 -0.01 0.77 16 17 C -0.08 -1.74 7.85 -39.64 -0.31 -2.05 16 18 C -0.15 -3.85 8.58 -39.34 -0.34 -4.19 16 19 C 0.11 2.81 5.57 -106.66 -0.59 2.22 16 20 C -0.44 -11.64 8.68 -37.97 -0.33 -11.97 16 21 H 0.08 2.15 7.67 -52.49 -0.40 1.75 16 22 C 0.07 1.78 5.21 -17.32 -0.09 1.69 16 23 N -0.79 -20.39 10.88 55.55 0.60 -19.79 16 24 Si 0.91 18.78 29.58 -169.99 -5.03 13.75 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.04 0.60 7.67 -51.93 -0.40 0.21 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.88 6.29 -52.48 -0.33 1.55 16 32 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 33 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.54 5.66 -52.49 -0.30 1.24 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.64 6.13 -51.93 -0.32 0.33 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 43 H 0.10 1.96 6.38 -51.93 -0.33 1.63 16 44 H 0.09 2.14 7.97 -52.49 -0.42 1.72 16 45 H 0.12 3.27 6.20 -52.49 -0.33 2.95 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -28.03 364.83 -10.90 -38.93 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.56 Total: 9.21 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -4.51 Total: -31.97 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: -0.11 Total: -28.06 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.18 Total: -7.37 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.03 -10.90 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244182073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.541 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds