Wall clock time and date at job start Sat Apr 11 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35682 * 117.00129 * 2 1 4 4 C 1.37904 * 120.18802 * 359.72763 * 3 2 1 5 5 C 1.39732 * 119.93086 * 179.77267 * 4 3 2 6 6 C 1.47839 * 119.84823 * 180.23008 * 5 4 3 7 7 C 1.39577 * 120.18925 * 304.82039 * 6 5 4 8 8 C 1.37870 * 119.92730 * 179.72322 * 7 6 5 9 9 C 1.38546 * 120.32204 * 0.55535 * 8 7 6 10 10 C 1.38111 * 120.38261 * 359.72316 * 9 8 7 11 11 C 1.38788 * 120.06480 * 359.97438 * 10 9 8 12 12 N 1.39258 * 120.16204 * 179.97438 * 11 10 9 13 13 C 1.48535 * 110.99904 * 359.90680 * 12 11 10 14 14 C 1.54931 * 103.22437 * 159.72501 * 13 12 11 15 15 C 1.54590 * 102.92546 * 322.58716 * 14 13 12 16 16 C 1.47892 * 111.00384 * 117.30860 * 12 11 10 17 17 C 1.40160 * 120.29909 * 0.52465 * 5 4 3 18 18 C 1.36081 * 120.38800 * 359.70160 * 17 5 4 19 19 C 1.40928 * 120.06081 * 0.04939 * 18 17 5 20 20 C 1.40807 * 120.15071 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00068 * 152.19209 * 20 19 18 22 22 C 1.39962 * 120.00097 * 332.18943 * 20 19 18 23 23 N 1.30870 * 119.99811 * 347.06266 * 22 20 19 24 24 Si 1.86796 * 120.00260 * 167.06140 * 22 20 19 25 25 H 1.48490 * 109.47249 * 90.00166 * 24 22 20 26 26 H 1.48501 * 109.46877 * 210.00090 * 24 22 20 27 27 H 1.48505 * 109.47163 * 329.99778 * 24 22 20 28 28 H 1.08995 * 109.47248 * 59.99581 * 1 2 3 29 29 H 1.09006 * 109.47019 * 299.99607 * 1 2 3 30 30 H 1.08997 * 109.46983 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.03535 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.03647 * 0.02562 * 7 6 5 33 33 H 1.08005 * 119.84311 * 180.27982 * 8 7 6 34 34 H 1.07992 * 119.80645 * 179.70188 * 9 8 7 35 35 H 1.08002 * 119.96850 * 179.97438 * 10 9 8 36 36 H 1.09000 * 110.66756 * 278.16415 * 13 12 11 37 37 H 1.09000 * 110.66293 * 41.28988 * 13 12 11 38 38 H 1.09003 * 110.72401 * 204.22993 * 14 13 12 39 39 H 1.08996 * 110.72570 * 80.95239 * 14 13 12 40 40 H 1.08998 * 110.31184 * 263.04348 * 15 14 13 41 41 H 1.09006 * 110.31187 * 140.87528 * 15 14 13 42 42 H 1.08996 * 109.91806 * 333.50807 * 16 12 11 43 43 H 1.09002 * 109.92041 * 94.80416 * 16 12 11 44 44 H 1.08001 * 119.80547 * 179.72860 * 17 5 4 45 45 H 1.07999 * 119.96694 * 180.02562 * 18 17 5 46 46 H 0.96994 * 120.00291 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2978 2.3680 -0.0057 5 6 1.9377 3.6101 -0.0008 6 6 1.1348 4.8515 -0.0018 7 6 0.1792 5.0685 -0.9956 8 6 -0.5706 6.2255 -0.9881 9 6 -0.3725 7.1809 -0.0044 10 6 0.5736 6.9822 0.9819 11 6 1.3329 5.8205 0.9932 12 7 2.2877 5.6183 1.9865 13 6 2.3294 6.7676 2.9266 14 6 3.0028 6.1698 4.1874 15 6 2.4192 4.7395 4.2460 16 6 1.9541 4.4358 2.8097 17 6 3.3373 3.6845 -0.0013 18 6 4.0870 2.5488 -0.0004 19 6 3.4580 1.2877 0.0000 20 6 4.2319 0.1114 0.0004 21 1 3.8375 -0.7943 0.4371 22 6 5.5122 0.1157 -0.5650 23 7 5.8942 1.1202 -1.3118 24 14 6.6757 -1.3121 -0.2537 25 1 6.4856 -2.3437 -1.3048 26 1 8.0779 -0.8242 -0.2868 27 1 6.3886 -1.9033 1.0779 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2190 2.3157 -0.0097 32 1 0.0237 4.3286 -1.7670 33 1 -1.3128 6.3900 -1.7552 34 1 -0.9611 8.0863 -0.0092 35 1 0.7227 7.7316 1.7452 36 1 2.9314 7.5784 2.5166 37 1 1.3215 7.1135 3.1561 38 1 2.7267 6.7358 5.0772 39 1 4.0859 6.1400 4.0688 40 1 1.5737 4.7037 4.9329 41 1 3.1874 4.0297 4.5530 42 1 0.8776 4.2656 2.7961 43 1 2.4763 3.5584 2.4281 44 1 3.8237 4.6488 -0.0020 45 1 5.1651 2.6140 -0.0003 46 1 6.7816 1.1235 -1.7035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244182073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:24 Heat of formation + Delta-G solvation = 7.208747 kcal Electronic energy + Delta-G solvation = -27623.773261 eV Core-core repulsion = 24056.707525 eV Total energy + Delta-G solvation = -3567.065736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.43389 -40.24282 -38.54325 -37.75392 -35.65180 -33.55036 -32.93261 -30.74953 -30.53699 -29.74248 -29.17324 -28.05143 -26.66756 -24.13671 -23.71849 -22.34772 -22.10446 -21.37461 -21.09010 -19.31793 -18.59706 -17.73007 -17.22421 -16.91083 -16.55144 -16.24598 -16.05740 -15.93735 -15.76142 -15.31592 -14.87213 -14.55646 -14.29906 -14.27373 -13.99721 -13.73377 -13.55664 -13.23550 -13.14552 -12.95763 -12.82218 -12.73331 -12.52909 -12.31128 -12.27304 -12.13616 -12.03825 -11.91048 -11.62449 -11.44471 -11.39133 -11.24228 -11.00310 -10.37297 -9.79401 -9.19473 -8.85725 -8.62814 -8.46641 -6.18566 0.33205 0.54503 1.05864 1.18639 1.37961 1.49986 1.53937 2.23341 2.71683 2.86983 2.92186 3.14562 3.69918 3.70096 3.79163 4.06016 4.07475 4.09983 4.27687 4.34300 4.35092 4.44084 4.45866 4.51995 4.60837 4.62720 4.70220 4.72405 4.73379 4.86718 4.93370 4.97891 5.01083 5.05145 5.16277 5.17721 5.22323 5.29485 5.38717 5.45790 5.54065 5.57830 5.68796 5.88496 5.91867 5.99629 6.13487 6.24998 6.32008 6.54419 6.54788 6.82243 6.93420 7.24983 8.38548 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.004371 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.062132 B = 6405.001352 C = 7278.493214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.001 4.001 4 C -0.161 4.161 5 C -0.127 4.127 6 C -0.049 4.049 7 C -0.114 4.114 8 C -0.143 4.143 9 C -0.107 4.107 10 C -0.174 4.174 11 C 0.090 3.910 12 N -0.479 5.479 13 C 0.027 3.973 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.053 3.947 17 C -0.084 4.084 18 C -0.161 4.161 19 C 0.068 3.932 20 C -0.478 4.478 21 H 0.069 0.931 22 C 0.032 3.968 23 N -0.831 5.831 24 Si 0.981 3.019 25 H -0.264 1.264 26 H -0.264 1.264 27 H -0.260 1.260 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 10.589 7.331 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.254 6.254 3 C -0.045 4.045 4 C -0.180 4.180 5 C -0.129 4.129 6 C -0.052 4.052 7 C -0.133 4.133 8 C -0.162 4.162 9 C -0.125 4.125 10 C -0.194 4.194 11 C -0.008 4.008 12 N -0.195 5.195 13 C -0.099 4.099 14 C -0.153 4.153 15 C -0.167 4.167 16 C -0.072 4.072 17 C -0.103 4.103 18 C -0.180 4.180 19 C 0.066 3.934 20 C -0.508 4.508 21 H 0.087 0.913 22 C -0.181 4.181 23 N -0.458 5.458 24 Si 0.802 3.198 25 H -0.189 1.189 26 H -0.189 1.189 27 H -0.184 1.184 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.122 0.878 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.957 10.379 6.982 15.385 hybrid contribution -0.088 -0.751 -0.136 0.768 sum -9.045 9.628 6.846 14.879 Atomic orbital electron populations 1.23037 0.78885 1.04082 1.00643 1.85918 1.21221 1.27877 1.90413 1.19221 0.92162 0.83749 1.09378 1.20799 0.97893 0.91418 1.07871 1.17904 0.91894 0.90800 1.12278 1.18714 0.97239 0.94010 0.95192 1.21301 0.96112 0.98427 0.97472 1.21244 1.00720 0.93784 1.00409 1.21320 0.97670 0.99585 0.93911 1.21537 0.97436 0.98557 1.01877 1.19296 0.91769 0.95261 0.94477 1.61554 1.42180 1.04909 1.10839 1.23569 1.01004 0.93263 0.92093 1.22478 1.00423 0.94714 0.97660 1.22437 1.01421 0.98243 0.94571 1.22706 0.98256 0.93295 0.92967 1.20353 0.92954 0.96359 1.00605 1.20664 0.98971 0.91208 1.07203 1.17410 0.88682 0.94412 0.92946 1.19502 0.99786 0.97095 1.34423 0.91319 1.26707 0.99447 0.99866 0.92129 1.69882 1.20328 1.32035 1.23541 0.85220 0.77002 0.77791 0.79780 1.18920 1.18869 1.18408 0.93453 0.93313 0.86968 0.86708 0.86842 0.83949 0.83140 0.83411 0.89189 0.91056 0.88012 0.91335 0.89700 0.91389 0.94622 0.92618 0.89012 0.87812 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.81 113.37 1.11 2.08 16 2 O -0.34 -16.16 9.81 -90.01 -0.88 -17.04 16 3 C 0.00 -0.04 6.71 23.00 0.15 0.11 16 4 C -0.16 -7.32 8.57 22.55 0.19 -7.12 16 5 C -0.13 -5.69 3.47 -19.91 -0.07 -5.76 16 6 C -0.05 -1.88 5.28 -19.91 -0.11 -1.98 16 7 C -0.11 -3.80 9.60 22.51 0.22 -3.59 16 8 C -0.14 -3.71 10.03 22.26 0.22 -3.48 16 9 C -0.11 -2.48 10.03 22.31 0.22 -2.25 16 10 C -0.17 -4.55 8.86 22.37 0.20 -4.35 16 11 C 0.09 3.00 5.24 38.59 0.20 3.20 16 12 N -0.48 -15.58 4.28 -681.96 -2.92 -18.50 16 13 C 0.03 0.62 5.43 86.65 0.47 1.09 16 14 C -0.11 -2.39 7.06 31.80 0.22 -2.16 16 15 C -0.13 -3.22 6.93 31.47 0.22 -3.00 16 16 C 0.05 1.78 5.36 86.45 0.46 2.24 16 17 C -0.08 -4.15 7.85 22.23 0.17 -3.97 16 18 C -0.16 -8.82 8.58 22.43 0.19 -8.62 16 19 C 0.07 3.85 5.57 -21.18 -0.12 3.73 16 20 C -0.48 -27.28 8.68 23.32 0.20 -27.08 16 21 H 0.07 3.92 7.67 -2.91 -0.02 3.89 16 22 C 0.03 1.68 5.21 85.25 0.44 2.13 16 23 N -0.83 -45.34 10.88 21.83 0.24 -45.10 16 24 Si 0.98 40.30 29.58 68.60 2.03 42.33 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 29 H 0.05 1.53 7.67 -2.38 -0.02 1.51 16 30 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.12 4.63 6.29 -2.91 -0.02 4.61 16 32 H 0.11 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 3.02 5.66 -2.91 -0.02 3.01 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.41 6.13 -2.39 -0.01 1.40 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.04 1.21 7.75 -2.39 -0.02 1.19 16 43 H 0.06 2.33 6.38 -2.39 -0.02 2.32 16 44 H 0.09 4.45 7.97 -2.91 -0.02 4.43 16 45 H 0.10 6.00 6.20 -2.91 -0.02 5.98 16 46 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 Total: -1.00 -66.74 364.83 4.07 -62.68 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.98 Total: 34.44 kcal Atomic # 6 Polarization: -63.43 SS G_CDS: 4.62 Total: -58.80 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -2.68 Total: -63.60 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.88 Total: -17.04 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -66.74 4.07 -62.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244182073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds