Wall clock time and date at job start Sat Apr 11 2020 01:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35886 * 116.99584 * 2 1 4 4 C 1.39520 * 119.77127 * 359.97438 * 3 2 1 5 5 C 1.37858 * 120.63613 * 180.02562 * 4 3 2 6 6 C 1.39294 * 120.15735 * 0.02927 * 5 4 3 7 7 C 1.47635 * 120.23580 * 179.97438 * 6 5 4 8 8 C 1.39679 * 120.19811 * 66.85220 * 7 6 5 9 9 C 1.37852 * 119.91898 * 180.02562 * 8 7 6 10 10 C 1.38565 * 120.32860 * 359.97438 * 9 8 7 11 11 C 1.38118 * 120.40954 * 0.02562 * 10 9 8 12 12 C 1.38776 * 120.07036 * 359.71761 * 11 10 9 13 13 N 1.39244 * 120.16588 * 180.30101 * 12 11 10 14 14 C 1.48531 * 111.00344 * 230.54838 * 13 12 11 15 15 C 1.54936 * 103.23218 * 159.72025 * 14 13 12 16 16 C 1.54602 * 102.91890 * 322.59013 * 15 14 13 17 17 C 1.47904 * 111.00193 * 347.94872 * 13 12 11 18 18 C 1.41981 * 119.53349 * 359.97071 * 6 5 4 19 19 C 1.40830 * 120.30693 * 180.02562 * 18 6 5 20 20 H 1.08002 * 119.99983 * 29.21411 * 19 18 6 21 21 C 1.40012 * 119.99720 * 209.48803 * 19 18 6 22 22 N 1.30810 * 120.00109 * 10.61662 * 21 19 18 23 23 Si 1.86798 * 119.99672 * 190.61542 * 21 19 18 24 24 H 1.48494 * 109.47291 * 60.00103 * 23 21 19 25 25 H 1.48502 * 109.46981 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47154 * 299.99959 * 23 21 19 27 27 C 1.37872 * 119.76652 * 180.30180 * 3 2 1 28 28 H 1.08995 * 109.47379 * 299.99864 * 1 2 3 29 29 H 1.08996 * 109.47082 * 60.00387 * 1 2 3 30 30 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.68382 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.92743 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.04276 * 359.97438 * 8 7 6 34 34 H 1.07993 * 119.83191 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.79370 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.96637 * 179.97438 * 11 10 9 37 37 H 1.08997 * 110.66834 * 278.16097 * 14 13 12 38 38 H 1.09007 * 110.65959 * 41.28330 * 14 13 12 39 39 H 1.08997 * 110.72468 * 204.23228 * 15 14 13 40 40 H 1.08998 * 110.71855 * 80.93886 * 15 14 13 41 41 H 1.08996 * 110.30761 * 263.04041 * 16 15 14 42 42 H 1.08995 * 110.30677 * 140.87027 * 16 15 14 43 43 H 1.08999 * 109.91319 * 333.50548 * 17 13 12 44 44 H 1.08998 * 109.91989 * 94.80040 * 17 13 12 45 45 H 0.96996 * 119.99911 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.08617 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2812 2.3778 -0.0005 5 6 1.8884 3.6155 -0.0011 6 6 3.2779 3.7133 -0.0017 7 6 3.9299 5.0379 -0.0029 8 6 3.8149 5.8785 1.1067 9 6 4.4256 7.1143 1.0992 10 6 5.1546 7.5279 -0.0042 11 6 5.2772 6.7076 -1.1086 12 6 4.6738 5.4579 -1.1170 13 7 4.8013 4.6267 -2.2268 14 6 3.4756 4.1269 -2.6727 15 6 3.7328 3.6995 -4.1396 16 6 4.7126 4.7818 -4.6483 17 6 5.3628 5.3640 -3.3795 18 6 4.0628 2.5302 -0.0012 19 6 5.4688 2.6101 -0.0012 20 1 5.9616 3.4560 0.4549 21 6 6.2275 1.5957 -0.5976 22 7 5.6409 0.6857 -1.3317 23 14 8.0776 1.5420 -0.3450 24 1 8.3758 1.4085 1.1035 25 1 8.6435 0.3801 -1.0766 26 1 8.6844 2.7950 -0.8619 27 6 3.4229 1.2775 -0.0063 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2032 2.3110 -0.0005 32 1 1.2854 4.5115 -0.0011 33 1 3.2475 5.5611 1.9690 34 1 4.3354 7.7634 1.9576 35 1 5.6299 8.4977 -0.0006 36 1 5.8468 7.0373 -1.9649 37 1 3.1647 3.2723 -2.0719 38 1 2.7303 4.9211 -2.6284 39 1 2.8069 3.7166 -4.7144 40 1 4.1942 2.7127 -4.1785 41 1 4.1709 5.5595 -5.1867 42 1 5.4709 4.3339 -5.2905 43 1 5.1250 6.4243 -3.2935 44 1 6.4432 5.2250 -3.4187 45 1 6.1666 -0.0168 -1.7452 46 1 4.0089 0.3702 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244183341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:32 Heat of formation + Delta-G solvation = 26.271710 kcal Electronic energy + Delta-G solvation = -28514.730487 eV Core-core repulsion = 24948.491383 eV Total energy + Delta-G solvation = -3566.239104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.94016 -38.55805 -37.04066 -36.20184 -33.49402 -32.11438 -31.22604 -29.64940 -28.52405 -28.26548 -27.50931 -26.07525 -25.09826 -22.56638 -22.17703 -20.91844 -20.43670 -19.76916 -19.42984 -17.65138 -16.78939 -16.02680 -15.59444 -15.29628 -15.08748 -14.78791 -14.64039 -14.25374 -14.06297 -13.55938 -13.23172 -13.03900 -12.93032 -12.67794 -12.37493 -12.07113 -12.01842 -11.61407 -11.47271 -11.35630 -11.30836 -11.12328 -11.03233 -10.97744 -10.68179 -10.63730 -10.44922 -10.29811 -10.09695 -9.71969 -9.59804 -9.50988 -9.12614 -8.91066 -8.08434 -7.38844 -7.00953 -6.78944 -6.52523 -4.29591 2.03657 2.12046 2.82409 2.99721 3.11287 3.16177 3.26867 4.00803 4.34170 4.37464 4.65004 4.73181 5.08930 5.14376 5.32783 5.52401 5.53798 5.63620 5.68196 5.72583 5.77567 5.79661 5.89378 5.91952 6.05410 6.08836 6.12216 6.15560 6.19305 6.25659 6.38292 6.42087 6.45799 6.63245 6.71952 6.85683 6.91626 7.01441 7.06425 7.13755 7.24391 7.33012 7.47365 7.48289 7.68391 7.78710 7.84042 7.98974 8.10453 8.18303 8.47346 8.80877 8.93127 8.98807 10.25428 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.006623 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.171100 B = 4226.906718 C = 4983.513193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.330 6.330 3 C 0.129 3.871 4 C -0.321 4.321 5 C -0.049 4.049 6 C -0.196 4.196 7 C -0.005 4.005 8 C -0.102 4.102 9 C -0.158 4.158 10 C -0.116 4.116 11 C -0.184 4.184 12 C 0.127 3.873 13 N -0.431 5.431 14 C 0.045 3.955 15 C -0.125 4.125 16 C -0.129 4.129 17 C 0.025 3.975 18 C 0.162 3.838 19 C -0.413 4.413 20 H 0.076 0.924 21 C 0.084 3.916 22 N -0.782 5.782 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.193 4.193 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.279 0.721 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 6.155 -2.905 7.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.245 6.245 3 C 0.086 3.914 4 C -0.341 4.341 5 C -0.067 4.067 6 C -0.198 4.198 7 C -0.007 4.007 8 C -0.120 4.120 9 C -0.177 4.177 10 C -0.135 4.135 11 C -0.205 4.205 12 C 0.027 3.973 13 N -0.143 5.143 14 C -0.080 4.080 15 C -0.163 4.163 16 C -0.167 4.167 17 C -0.102 4.102 18 C 0.158 3.842 19 C -0.441 4.441 20 H 0.094 0.906 21 C -0.135 4.135 22 N -0.407 5.407 23 Si 0.728 3.272 24 H -0.190 1.190 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.213 4.213 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.611 5.261 -2.998 6.594 hybrid contribution 0.290 0.755 -0.155 0.824 sum -2.321 6.017 -3.153 7.178 Atomic orbital electron populations 1.22732 0.80936 1.01722 1.00427 1.86011 1.19357 1.29257 1.89836 1.19014 0.92480 0.82365 0.97574 1.20273 0.97148 0.92449 1.24227 1.20291 0.93240 0.95081 0.98107 1.18371 0.91707 0.91025 1.18701 1.18434 0.96875 0.93662 0.91750 1.21166 0.99741 0.93783 0.97345 1.20783 1.01383 0.97125 0.98429 1.20753 0.99906 0.98941 0.93852 1.21012 1.05966 0.93921 0.99638 1.19231 0.95720 0.89214 0.93137 1.61324 1.21012 1.29808 1.02177 1.23517 0.88003 1.01260 0.95188 1.22518 0.98401 0.99502 0.95871 1.22381 0.98886 0.98386 0.97044 1.23156 1.00412 0.96495 0.90112 1.17127 0.92685 0.88409 0.85950 1.19275 0.90827 1.04232 1.29783 0.90605 1.25805 1.00679 0.94075 0.92964 1.69787 1.38030 1.11183 1.21679 0.86442 0.82781 0.78538 0.79459 1.19042 1.20507 1.18970 1.20576 0.89196 0.99307 1.12183 0.93802 0.93747 0.90064 0.88886 0.89379 0.86739 0.87416 0.87445 0.86446 0.86209 0.94662 0.91764 0.90315 0.92088 0.91470 0.92840 0.90614 0.90983 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.15 10.48 -19.38 -0.20 -7.36 16 3 C 0.13 3.04 6.67 -39.24 -0.26 2.77 16 4 C -0.32 -6.92 9.02 -39.24 -0.35 -7.27 16 5 C -0.05 -1.04 8.85 -39.33 -0.35 -1.39 16 6 C -0.20 -4.45 2.79 -104.24 -0.29 -4.74 16 7 C 0.00 -0.10 4.20 -104.71 -0.44 -0.54 16 8 C -0.10 -1.93 9.76 -39.18 -0.38 -2.31 16 9 C -0.16 -2.65 10.03 -39.60 -0.40 -3.04 16 10 C -0.12 -1.89 10.03 -39.51 -0.40 -2.29 16 11 C -0.18 -3.27 8.71 -39.43 -0.34 -3.62 16 12 C 0.13 2.56 5.06 -83.48 -0.42 2.14 16 13 N -0.43 -8.65 4.37 -166.87 -0.73 -9.38 16 14 C 0.04 0.88 4.93 -1.90 -0.01 0.87 16 15 C -0.12 -2.11 7.06 -24.87 -0.18 -2.28 16 16 C -0.13 -1.89 6.93 -25.37 -0.18 -2.06 16 17 C 0.03 0.41 5.71 -2.75 -0.02 0.40 16 18 C 0.16 4.04 4.33 -106.57 -0.46 3.58 16 19 C -0.41 -10.48 7.36 -37.94 -0.28 -10.76 16 20 H 0.08 1.98 7.28 -52.49 -0.38 1.60 16 21 C 0.08 2.05 5.25 -17.32 -0.09 1.96 16 22 N -0.78 -19.56 10.86 55.55 0.60 -18.95 16 23 Si 0.90 19.09 29.57 -169.99 -5.03 14.06 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 C -0.19 -4.92 8.57 -38.80 -0.33 -5.25 16 28 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 29 H 0.04 0.67 7.64 -51.93 -0.40 0.27 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.78 6.25 -52.48 -0.33 1.46 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.11 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.85 5.82 -52.49 -0.31 1.55 16 37 H 0.12 2.76 4.55 -51.93 -0.24 2.53 16 38 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.81 5.73 -51.93 -0.30 0.51 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 46 H 0.13 3.46 6.24 -52.49 -0.33 3.13 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -27.07 360.21 -10.56 -37.63 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.45 Total: 10.81 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -4.19 Total: -32.25 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: -0.13 Total: -28.34 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.20 Total: -7.36 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.07 -10.56 -37.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244183341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.906 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds