Wall clock time and date at job start Sat Apr 11 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35886 * 116.99584 * 2 1 4 4 C 1.39520 * 119.77127 * 359.97438 * 3 2 1 5 5 C 1.37858 * 120.63613 * 180.02562 * 4 3 2 6 6 C 1.39294 * 120.15735 * 0.02927 * 5 4 3 7 7 C 1.47635 * 120.23580 * 179.97438 * 6 5 4 8 8 C 1.39679 * 120.19811 * 66.85220 * 7 6 5 9 9 C 1.37852 * 119.91898 * 180.02562 * 8 7 6 10 10 C 1.38565 * 120.32860 * 359.97438 * 9 8 7 11 11 C 1.38118 * 120.40954 * 0.02562 * 10 9 8 12 12 C 1.38776 * 120.07036 * 359.71761 * 11 10 9 13 13 N 1.39244 * 120.16588 * 180.30101 * 12 11 10 14 14 C 1.48531 * 111.00344 * 230.54838 * 13 12 11 15 15 C 1.54936 * 103.23218 * 159.72025 * 14 13 12 16 16 C 1.54602 * 102.91890 * 322.59013 * 15 14 13 17 17 C 1.47904 * 111.00193 * 347.94872 * 13 12 11 18 18 C 1.41981 * 119.53349 * 359.97071 * 6 5 4 19 19 C 1.40830 * 120.30693 * 180.02562 * 18 6 5 20 20 H 1.08002 * 119.99983 * 29.21411 * 19 18 6 21 21 C 1.40012 * 119.99720 * 209.48803 * 19 18 6 22 22 N 1.30810 * 120.00109 * 10.61662 * 21 19 18 23 23 Si 1.86798 * 119.99672 * 190.61542 * 21 19 18 24 24 H 1.48494 * 109.47291 * 60.00103 * 23 21 19 25 25 H 1.48502 * 109.46981 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47154 * 299.99959 * 23 21 19 27 27 C 1.37872 * 119.76652 * 180.30180 * 3 2 1 28 28 H 1.08995 * 109.47379 * 299.99864 * 1 2 3 29 29 H 1.08996 * 109.47082 * 60.00387 * 1 2 3 30 30 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.68382 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.92743 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.04276 * 359.97438 * 8 7 6 34 34 H 1.07993 * 119.83191 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.79370 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.96637 * 179.97438 * 11 10 9 37 37 H 1.08997 * 110.66834 * 278.16097 * 14 13 12 38 38 H 1.09007 * 110.65959 * 41.28330 * 14 13 12 39 39 H 1.08997 * 110.72468 * 204.23228 * 15 14 13 40 40 H 1.08998 * 110.71855 * 80.93886 * 15 14 13 41 41 H 1.08996 * 110.30761 * 263.04041 * 16 15 14 42 42 H 1.08995 * 110.30677 * 140.87027 * 16 15 14 43 43 H 1.08999 * 109.91319 * 333.50548 * 17 13 12 44 44 H 1.08998 * 109.91989 * 94.80040 * 17 13 12 45 45 H 0.96996 * 119.99911 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.08617 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2812 2.3778 -0.0005 5 6 1.8884 3.6155 -0.0011 6 6 3.2779 3.7133 -0.0017 7 6 3.9299 5.0379 -0.0029 8 6 3.8149 5.8785 1.1067 9 6 4.4256 7.1143 1.0992 10 6 5.1546 7.5279 -0.0042 11 6 5.2772 6.7076 -1.1086 12 6 4.6738 5.4579 -1.1170 13 7 4.8013 4.6267 -2.2268 14 6 3.4756 4.1269 -2.6727 15 6 3.7328 3.6995 -4.1396 16 6 4.7126 4.7818 -4.6483 17 6 5.3628 5.3640 -3.3795 18 6 4.0628 2.5302 -0.0012 19 6 5.4688 2.6101 -0.0012 20 1 5.9616 3.4560 0.4549 21 6 6.2275 1.5957 -0.5976 22 7 5.6409 0.6857 -1.3317 23 14 8.0776 1.5420 -0.3450 24 1 8.3758 1.4085 1.1035 25 1 8.6435 0.3801 -1.0766 26 1 8.6844 2.7950 -0.8619 27 6 3.4229 1.2775 -0.0063 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2032 2.3110 -0.0005 32 1 1.2854 4.5115 -0.0011 33 1 3.2475 5.5611 1.9690 34 1 4.3354 7.7634 1.9576 35 1 5.6299 8.4977 -0.0006 36 1 5.8468 7.0373 -1.9649 37 1 3.1647 3.2723 -2.0719 38 1 2.7303 4.9211 -2.6284 39 1 2.8069 3.7166 -4.7144 40 1 4.1942 2.7127 -4.1785 41 1 4.1709 5.5595 -5.1867 42 1 5.4709 4.3339 -5.2905 43 1 5.1250 6.4243 -3.2935 44 1 6.4432 5.2250 -3.4187 45 1 6.1666 -0.0168 -1.7452 46 1 4.0089 0.3702 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244183341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:31 Heat of formation + Delta-G solvation = 13.703622 kcal Electronic energy + Delta-G solvation = -28515.275480 eV Core-core repulsion = 24948.491383 eV Total energy + Delta-G solvation = -3566.784097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40863 -40.20736 -38.45163 -37.83939 -35.30492 -33.47014 -32.74996 -31.45626 -30.02847 -29.64750 -28.94549 -27.55985 -26.88033 -23.95961 -23.68119 -22.67196 -21.93711 -21.20806 -20.88206 -19.41222 -18.19693 -17.83029 -17.01736 -16.80361 -16.70406 -16.30537 -16.28953 -15.66949 -15.42934 -15.01215 -14.83665 -14.58557 -14.42444 -14.24637 -13.94883 -13.59939 -13.43129 -13.19189 -13.02191 -12.83214 -12.78451 -12.74623 -12.62323 -12.35963 -12.26356 -12.04812 -11.94911 -11.80392 -11.42698 -11.35477 -11.28665 -11.19759 -10.89993 -10.34727 -9.52053 -9.22486 -8.63652 -8.47263 -8.20133 -6.18317 0.58428 0.72425 1.06090 1.24432 1.37120 1.45588 1.53876 2.24740 2.79043 2.88397 2.98506 3.28777 3.78778 3.80770 3.82797 4.11262 4.21819 4.24446 4.35900 4.37794 4.42088 4.48275 4.53924 4.57989 4.63205 4.71117 4.75203 4.78056 4.82815 4.93838 4.95098 5.06005 5.12081 5.15387 5.24105 5.24578 5.34513 5.36462 5.44763 5.55865 5.65622 5.73034 5.82066 5.97903 6.03351 6.12849 6.22257 6.28207 6.35939 6.60302 6.74402 7.02819 7.08094 7.16303 8.44818 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.006623 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.171100 B = 4226.906718 C = 4983.513193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.125 3.875 4 C -0.314 4.314 5 C -0.055 4.055 6 C -0.183 4.183 7 C -0.042 4.042 8 C -0.112 4.112 9 C -0.156 4.156 10 C -0.107 4.107 11 C -0.190 4.190 12 C 0.110 3.890 13 N -0.457 5.457 14 C 0.051 3.949 15 C -0.122 4.122 16 C -0.118 4.118 17 C 0.022 3.978 18 C 0.146 3.854 19 C -0.432 4.432 20 H 0.059 0.941 21 C 0.050 3.950 22 N -0.811 5.811 23 Si 0.958 3.042 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.267 1.267 27 C -0.226 4.226 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.281 0.719 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 8.758 -3.407 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.081 3.919 4 C -0.334 4.334 5 C -0.073 4.073 6 C -0.184 4.184 7 C -0.045 4.045 8 C -0.131 4.131 9 C -0.174 4.174 10 C -0.125 4.125 11 C -0.211 4.211 12 C 0.010 3.990 13 N -0.169 5.169 14 C -0.074 4.074 15 C -0.160 4.160 16 C -0.156 4.156 17 C -0.104 4.104 18 C 0.143 3.857 19 C -0.461 4.461 20 H 0.077 0.923 21 C -0.165 4.165 22 N -0.437 5.437 23 Si 0.781 3.219 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.191 1.191 27 C -0.246 4.246 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.017 7.861 -3.499 9.118 hybrid contribution 0.248 0.010 0.043 0.252 sum -2.769 7.871 -3.456 9.032 Atomic orbital electron populations 1.23098 0.77843 1.04306 1.01352 1.85972 1.22588 1.28635 1.89648 1.19084 0.92152 0.83693 0.97018 1.20550 0.98422 0.91748 1.22652 1.20562 0.93175 0.95876 0.97680 1.18564 0.92163 0.91392 1.16316 1.18545 0.98991 0.93506 0.93427 1.21306 1.00321 0.94691 0.96800 1.21128 1.00242 0.96395 0.99683 1.21207 0.98576 0.99991 0.92723 1.21316 1.05657 0.93112 1.01022 1.19428 0.96213 0.90290 0.93029 1.61246 1.21115 1.31115 1.03466 1.23277 0.88306 0.99738 0.96111 1.22463 0.99937 0.98850 0.94757 1.22364 0.98594 0.98159 0.96491 1.23250 1.00216 0.97281 0.89676 1.17320 0.93039 0.89109 0.86242 1.19172 0.91313 1.04380 1.31248 0.92281 1.26386 1.04043 0.93634 0.92480 1.69869 1.39205 1.11901 1.22739 0.85607 0.78481 0.78525 0.79255 1.18985 1.19483 1.19132 1.20479 0.90362 0.98694 1.15063 0.92621 0.92870 0.86852 0.86136 0.87301 0.86668 0.84244 0.83716 0.84452 0.90201 0.94478 0.89599 0.93137 0.89224 0.90429 0.91057 0.90896 0.90851 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.80 113.37 1.11 1.99 16 2 O -0.35 -15.58 10.48 -92.27 -0.97 -16.55 16 3 C 0.12 6.04 6.67 22.49 0.15 6.19 16 4 C -0.31 -13.52 9.02 22.49 0.20 -13.32 16 5 C -0.05 -2.35 8.85 22.43 0.20 -2.16 16 6 C -0.18 -8.53 2.79 -19.61 -0.05 -8.59 16 7 C -0.04 -1.79 4.20 -19.92 -0.08 -1.88 16 8 C -0.11 -4.18 9.76 22.53 0.22 -3.96 16 9 C -0.16 -4.77 10.03 22.26 0.22 -4.54 16 10 C -0.11 -3.11 10.03 22.32 0.22 -2.88 16 11 C -0.19 -6.32 8.71 22.37 0.19 -6.12 16 12 C 0.11 4.41 5.06 38.62 0.20 4.60 16 13 N -0.46 -18.44 4.37 -681.86 -2.98 -21.42 16 14 C 0.05 2.03 4.93 86.65 0.43 2.45 16 15 C -0.12 -4.10 7.06 31.80 0.22 -3.87 16 16 C -0.12 -3.23 6.93 31.48 0.22 -3.01 16 17 C 0.02 0.70 5.71 86.45 0.49 1.19 16 18 C 0.15 7.68 4.33 -21.12 -0.09 7.59 16 19 C -0.43 -23.12 7.36 23.33 0.17 -22.95 16 20 H 0.06 3.26 7.28 -2.91 -0.02 3.24 16 21 C 0.05 2.58 5.25 85.28 0.45 3.03 16 22 N -0.81 -43.06 10.86 21.84 0.24 -42.82 16 23 Si 0.96 40.55 29.57 68.60 2.03 42.57 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C -0.23 -12.25 8.57 22.78 0.20 -12.06 16 28 H 0.06 1.56 7.65 -2.39 -0.02 1.55 16 29 H 0.05 1.52 7.64 -2.39 -0.02 1.51 16 30 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.12 4.43 6.25 -2.91 -0.02 4.41 16 32 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.14 3.91 5.82 -2.91 -0.02 3.89 16 37 H 0.08 3.86 4.55 -2.39 -0.01 3.84 16 38 H 0.04 1.42 8.00 -2.38 -0.02 1.40 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 1.97 5.73 -2.39 -0.01 1.95 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.28 13.86 8.30 -92.71 -0.77 13.10 16 46 H 0.10 5.81 6.24 -2.91 -0.02 5.79 16 Total: -1.00 -62.96 360.21 3.98 -58.99 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.99 Total: 37.53 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 4.67 Total: -58.30 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -2.74 Total: -64.24 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.97 Total: -16.55 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -62.96 3.98 -58.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244183341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.691 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds