Wall clock time and date at job start Sat Apr 11 2020 01:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35538 * 116.99775 * 2 1 4 4 C 1.39114 * 120.48442 * 359.97393 * 3 2 1 5 5 C 1.38323 * 118.63551 * 179.74954 * 4 3 2 6 6 C 1.40069 * 119.57436 * 0.52047 * 5 4 3 7 7 C 1.48249 * 119.52061 * 179.74526 * 6 5 4 8 8 C 1.39448 * 120.12997 * 359.70441 * 7 6 5 9 9 C 1.37969 * 119.87301 * 180.02562 * 8 7 6 10 10 C 1.38366 * 120.12615 * 0.02562 * 9 8 7 11 11 C 1.38321 * 120.26269 * 359.71612 * 10 9 8 12 12 C 1.50693 * 119.93806 * 180.28046 * 11 10 9 13 13 C 1.54268 * 110.03083 * 58.18632 * 12 11 10 14 14 C 1.54970 * 104.15790 * 217.13491 * 13 12 11 15 15 C 1.54887 * 102.77680 * 37.88995 * 14 13 12 16 16 C 1.53882 * 110.03378 * 300.96937 * 12 11 10 17 17 C 1.38012 * 120.12488 * 0.56399 * 11 10 9 18 18 N 1.32177 * 120.96044 * 359.46879 * 6 5 4 19 19 C 1.33566 * 121.46733 * 0.27250 * 18 6 5 20 20 C 1.41000 * 119.83957 * 180.02562 * 19 18 6 21 21 H 1.07999 * 120.00539 * 180.02562 * 20 19 18 22 22 C 1.40026 * 119.99730 * 0.02562 * 20 19 18 23 23 N 1.30777 * 120.00207 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00053 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47384 * 60.00399 * 24 22 20 26 26 H 1.48502 * 109.47185 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47229 * 299.99905 * 24 22 20 28 28 H 1.09001 * 109.47459 * 299.99961 * 1 2 3 29 29 H 1.09003 * 109.47151 * 60.00249 * 1 2 3 30 30 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.67980 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.21320 * 180.28123 * 5 4 3 33 33 H 1.07998 * 120.06168 * 0.02562 * 8 7 6 34 34 H 1.07994 * 119.93890 * 180.02562 * 9 8 7 35 35 H 1.08005 * 119.86548 * 180.02562 * 10 9 8 36 36 H 1.09000 * 110.02152 * 179.58077 * 12 11 10 37 37 H 1.08993 * 110.48861 * 335.78422 * 13 12 11 38 38 H 1.09005 * 110.48442 * 98.43115 * 13 12 11 39 39 H 1.09001 * 110.72222 * 279.57140 * 14 13 12 40 40 H 1.08999 * 110.91958 * 156.29524 * 14 13 12 41 41 H 1.09003 * 110.48185 * 203.40160 * 15 14 13 42 42 H 1.08998 * 110.59853 * 80.81776 * 15 14 13 43 43 H 1.08999 * 110.02932 * 238.56717 * 16 12 11 44 44 H 1.09000 * 110.03047 * 359.95448 * 16 12 11 45 45 H 1.08002 * 120.06716 * 179.72178 * 17 11 10 46 46 H 0.97000 * 120.00305 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2964 2.3807 -0.0005 5 6 1.9638 3.5923 0.0048 6 6 3.3644 3.6101 -0.0005 7 6 4.0784 4.9094 -0.0005 8 6 3.3585 6.1037 -0.0015 9 6 4.0284 7.3098 -0.0021 10 6 5.4118 7.3358 -0.0022 11 6 6.1313 6.1545 0.0042 12 6 7.6377 6.1914 0.0104 13 6 8.1421 6.9716 1.2420 14 6 9.3810 7.7429 0.7208 15 6 8.9504 8.1571 -0.7082 16 6 8.1517 6.9445 -1.2291 17 6 5.4720 4.9420 -0.0011 18 7 4.0587 2.4855 0.0000 19 6 3.4556 1.2937 0.0001 20 6 4.2301 0.1155 0.0012 21 1 3.7452 -0.8496 0.0008 22 6 5.6280 0.1966 0.0026 23 7 6.2152 1.3651 0.0035 24 14 6.6542 -1.3643 0.0033 25 1 6.3425 -2.1622 -1.2097 26 1 8.0960 -1.0089 0.0055 27 1 6.3399 -2.1628 1.2153 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2170 2.3461 -0.0006 32 1 1.4085 4.5187 0.0091 33 1 2.2787 6.0845 -0.0019 34 1 3.4720 8.2354 -0.0024 35 1 5.9319 8.2824 -0.0022 36 1 8.0358 5.1768 0.0225 37 1 7.3792 7.6671 1.5917 38 1 8.4270 6.2843 2.0386 39 1 10.2547 7.0920 0.6876 40 1 9.5789 8.6217 1.3345 41 1 9.8253 8.3349 -1.3337 42 1 8.3187 9.0448 -0.6762 43 1 8.7999 6.2955 -1.8181 44 1 7.3115 7.2826 -1.8356 45 1 6.0347 4.0201 -0.0006 46 1 7.1836 1.4213 0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244985740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:37 Heat of formation + Delta-G solvation = 1.717913 kcal Electronic energy + Delta-G solvation = -26696.647341 eV Core-core repulsion = 23129.343505 eV Total energy + Delta-G solvation = -3567.303836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.51084 -38.82666 -37.36008 -36.35192 -33.73714 -31.64622 -31.03696 -30.40213 -28.59832 -28.56570 -27.27972 -26.56289 -25.42522 -22.73380 -22.13053 -20.93737 -20.68987 -20.43816 -18.85442 -17.48018 -16.73589 -16.38957 -15.85878 -15.42560 -15.01319 -14.83257 -14.77946 -14.45823 -13.90495 -13.54691 -13.29867 -13.04819 -12.86943 -12.74046 -12.60480 -12.49520 -12.04038 -11.63855 -11.47906 -11.26344 -11.25451 -11.09313 -11.04971 -10.97484 -10.74778 -10.64162 -10.57680 -10.46577 -10.37598 -10.24582 -10.12395 -9.82007 -9.44799 -8.40747 -8.13866 -8.10771 -7.76658 -6.87741 -6.46159 -4.42169 1.62822 2.03777 2.77443 2.99516 3.09302 3.12554 3.21154 3.95620 4.33331 4.38719 4.71865 4.77143 4.82119 4.89900 5.30587 5.38709 5.40748 5.53895 5.61881 5.68065 5.68508 5.69819 5.72276 5.76394 5.84252 5.87712 5.88870 5.93363 5.96076 6.00301 6.09044 6.11860 6.23458 6.30056 6.35629 6.36632 6.45012 6.60979 6.65651 6.70434 6.85424 7.00540 7.14978 7.22400 7.31054 7.43966 7.57843 7.68313 7.88640 8.17578 8.27797 8.68351 8.97205 9.98231 10.27909 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.004092 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.504444 B = 6841.156540 C = 8988.490097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.028 4.028 4 C -0.148 4.148 5 C -0.270 4.270 6 C 0.149 3.851 7 C -0.011 4.011 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.127 4.127 11 C -0.088 4.088 12 C -0.051 4.051 13 C -0.116 4.116 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.079 4.079 18 N -0.449 5.449 19 C 0.254 3.746 20 C -0.413 4.413 21 H 0.090 0.910 22 C 0.069 3.931 23 N -0.717 5.717 24 Si 0.910 3.090 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.153 0.847 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 9.442 0.032 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.076 4.076 4 C -0.172 4.172 5 C -0.294 4.294 6 C 0.008 3.992 7 C -0.012 4.012 8 C -0.139 4.139 9 C -0.150 4.150 10 C -0.145 4.145 11 C -0.088 4.088 12 C -0.069 4.069 13 C -0.154 4.154 14 C -0.163 4.163 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.097 4.097 18 N -0.164 5.164 19 C 0.126 3.874 20 C -0.444 4.444 21 H 0.108 0.892 22 C -0.156 4.156 23 N -0.339 5.339 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.189 1.189 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.171 0.829 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.297 9.339 0.028 9.904 hybrid contribution -1.037 -0.456 -0.015 1.133 sum 2.260 8.883 0.012 9.166 Atomic orbital electron populations 1.22762 0.81681 1.01906 0.99953 1.85940 1.18341 1.27854 1.90017 1.20370 0.93721 0.83223 1.10298 1.20868 0.97756 0.92627 1.05972 1.21002 0.94263 0.96218 1.17885 1.19690 0.89425 0.92165 0.97947 1.18783 0.93045 0.91423 0.97966 1.21210 0.99652 0.91815 1.01186 1.20846 0.94273 0.97143 1.02741 1.20824 0.93771 0.97244 1.02666 1.19773 0.94602 0.93170 1.01212 1.20732 0.91455 1.00177 0.94538 1.22499 0.97047 0.98644 0.97162 1.22518 0.98030 0.99575 0.96162 1.22364 0.99331 0.98082 0.96327 1.22248 0.99518 0.96439 0.97240 1.21680 0.94070 0.98261 0.95731 1.68864 1.34748 0.95263 1.17522 1.18116 0.84961 0.92080 0.92270 1.19488 0.90619 0.92980 1.41363 0.89175 1.26032 0.98640 0.97264 0.93677 1.70076 1.10443 1.24570 1.28780 0.86349 0.78336 0.81976 0.79954 1.18941 1.20262 1.18946 0.94171 0.94165 0.89841 0.87822 0.88229 0.86358 0.86961 0.87168 0.90052 0.91320 0.91650 0.91657 0.91962 0.92105 0.91915 0.91868 0.91465 0.82924 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.02 9.61 -18.31 -0.18 -7.19 16 3 C -0.03 -0.69 6.74 -38.06 -0.26 -0.94 16 4 C -0.15 -3.35 9.11 -39.22 -0.36 -3.71 16 5 C -0.27 -6.14 9.46 -38.86 -0.37 -6.51 16 6 C 0.15 3.65 6.74 -82.92 -0.56 3.09 16 7 C -0.01 -0.24 5.88 -104.90 -0.62 -0.86 16 8 C -0.12 -2.17 9.42 -39.23 -0.37 -2.54 16 9 C -0.13 -2.06 10.03 -39.63 -0.40 -2.46 16 10 C -0.13 -1.94 8.09 -39.50 -0.32 -2.26 16 11 C -0.09 -1.48 4.68 -104.68 -0.49 -1.97 16 12 C -0.05 -0.73 3.13 -90.65 -0.28 -1.01 16 13 C -0.12 -1.44 6.27 -25.03 -0.16 -1.60 16 14 C -0.13 -1.29 6.91 -24.70 -0.17 -1.46 16 15 C -0.12 -1.27 6.83 -25.07 -0.17 -1.45 16 16 C -0.12 -1.46 6.23 -25.61 -0.16 -1.62 16 17 C -0.08 -1.63 9.20 -39.23 -0.36 -1.99 16 18 N -0.45 -12.14 6.90 -7.57 -0.05 -12.19 16 19 C 0.25 6.96 6.56 -84.86 -0.56 6.40 16 20 C -0.41 -11.09 8.94 -37.87 -0.34 -11.43 16 21 H 0.09 2.35 7.31 -52.49 -0.38 1.97 16 22 C 0.07 1.72 5.50 -17.33 -0.10 1.62 16 23 N -0.72 -18.25 11.08 55.55 0.62 -17.63 16 24 Si 0.91 18.58 29.56 -169.99 -5.02 13.55 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 28 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 29 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 2.00 6.43 -52.49 -0.34 1.67 16 32 H 0.10 1.98 6.16 -52.48 -0.32 1.65 16 33 H 0.12 1.98 6.16 -52.49 -0.32 1.66 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.43 7.78 -52.48 -0.41 1.02 16 36 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 37 H 0.07 0.86 6.92 -51.93 -0.36 0.50 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.88 7.27 -51.93 -0.38 0.50 16 45 H 0.15 3.52 7.05 -52.49 -0.37 3.15 16 46 H 0.27 6.31 8.29 -40.82 -0.34 5.97 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -28.83 369.72 -10.71 -39.54 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.61 Total: 7.49 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -5.03 Total: -29.13 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.56 Total: -29.83 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.18 Total: -7.19 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.83 -10.71 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244985740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.259 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds