Wall clock time and date at job start Sat Apr 11 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35538 * 116.99775 * 2 1 4 4 C 1.39114 * 120.48442 * 359.97393 * 3 2 1 5 5 C 1.38323 * 118.63551 * 179.74954 * 4 3 2 6 6 C 1.40069 * 119.57436 * 0.52047 * 5 4 3 7 7 C 1.48249 * 119.52061 * 179.74526 * 6 5 4 8 8 C 1.39448 * 120.12997 * 359.70441 * 7 6 5 9 9 C 1.37969 * 119.87301 * 180.02562 * 8 7 6 10 10 C 1.38366 * 120.12615 * 0.02562 * 9 8 7 11 11 C 1.38321 * 120.26269 * 359.71612 * 10 9 8 12 12 C 1.50693 * 119.93806 * 180.28046 * 11 10 9 13 13 C 1.54268 * 110.03083 * 58.18632 * 12 11 10 14 14 C 1.54970 * 104.15790 * 217.13491 * 13 12 11 15 15 C 1.54887 * 102.77680 * 37.88995 * 14 13 12 16 16 C 1.53882 * 110.03378 * 300.96937 * 12 11 10 17 17 C 1.38012 * 120.12488 * 0.56399 * 11 10 9 18 18 N 1.32177 * 120.96044 * 359.46879 * 6 5 4 19 19 C 1.33566 * 121.46733 * 0.27250 * 18 6 5 20 20 C 1.41000 * 119.83957 * 180.02562 * 19 18 6 21 21 H 1.07999 * 120.00539 * 180.02562 * 20 19 18 22 22 C 1.40026 * 119.99730 * 0.02562 * 20 19 18 23 23 N 1.30777 * 120.00207 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00053 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47384 * 60.00399 * 24 22 20 26 26 H 1.48502 * 109.47185 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47229 * 299.99905 * 24 22 20 28 28 H 1.09001 * 109.47459 * 299.99961 * 1 2 3 29 29 H 1.09003 * 109.47151 * 60.00249 * 1 2 3 30 30 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.67980 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.21320 * 180.28123 * 5 4 3 33 33 H 1.07998 * 120.06168 * 0.02562 * 8 7 6 34 34 H 1.07994 * 119.93890 * 180.02562 * 9 8 7 35 35 H 1.08005 * 119.86548 * 180.02562 * 10 9 8 36 36 H 1.09000 * 110.02152 * 179.58077 * 12 11 10 37 37 H 1.08993 * 110.48861 * 335.78422 * 13 12 11 38 38 H 1.09005 * 110.48442 * 98.43115 * 13 12 11 39 39 H 1.09001 * 110.72222 * 279.57140 * 14 13 12 40 40 H 1.08999 * 110.91958 * 156.29524 * 14 13 12 41 41 H 1.09003 * 110.48185 * 203.40160 * 15 14 13 42 42 H 1.08998 * 110.59853 * 80.81776 * 15 14 13 43 43 H 1.08999 * 110.02932 * 238.56717 * 16 12 11 44 44 H 1.09000 * 110.03047 * 359.95448 * 16 12 11 45 45 H 1.08002 * 120.06716 * 179.72178 * 17 11 10 46 46 H 0.97000 * 120.00305 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2964 2.3807 -0.0005 5 6 1.9638 3.5923 0.0048 6 6 3.3644 3.6101 -0.0005 7 6 4.0784 4.9094 -0.0005 8 6 3.3585 6.1037 -0.0015 9 6 4.0284 7.3098 -0.0021 10 6 5.4118 7.3358 -0.0022 11 6 6.1313 6.1545 0.0042 12 6 7.6377 6.1914 0.0104 13 6 8.1421 6.9716 1.2420 14 6 9.3810 7.7429 0.7208 15 6 8.9504 8.1571 -0.7082 16 6 8.1517 6.9445 -1.2291 17 6 5.4720 4.9420 -0.0011 18 7 4.0587 2.4855 0.0000 19 6 3.4556 1.2937 0.0001 20 6 4.2301 0.1155 0.0012 21 1 3.7452 -0.8496 0.0008 22 6 5.6280 0.1966 0.0026 23 7 6.2152 1.3651 0.0035 24 14 6.6542 -1.3643 0.0033 25 1 6.3425 -2.1622 -1.2097 26 1 8.0960 -1.0089 0.0055 27 1 6.3399 -2.1628 1.2153 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2170 2.3461 -0.0006 32 1 1.4085 4.5187 0.0091 33 1 2.2787 6.0845 -0.0019 34 1 3.4720 8.2354 -0.0024 35 1 5.9319 8.2824 -0.0022 36 1 8.0358 5.1768 0.0225 37 1 7.3792 7.6671 1.5917 38 1 8.4270 6.2843 2.0386 39 1 10.2547 7.0920 0.6876 40 1 9.5789 8.6217 1.3345 41 1 9.8253 8.3349 -1.3337 42 1 8.3187 9.0448 -0.6762 43 1 8.7999 6.2955 -1.8181 44 1 7.3115 7.2826 -1.8356 45 1 6.0347 4.0201 -0.0006 46 1 7.1836 1.4213 0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244985740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:36 Heat of formation + Delta-G solvation = -11.399252 kcal Electronic energy + Delta-G solvation = -26697.216144 eV Core-core repulsion = 23129.343505 eV Total energy + Delta-G solvation = -3567.872639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99757 -40.36776 -38.74357 -37.84987 -35.57919 -33.08068 -32.52622 -32.13844 -30.23744 -29.51680 -28.48603 -28.09715 -27.14406 -24.25347 -23.74868 -22.49831 -22.09143 -21.37757 -20.21028 -19.26797 -18.46811 -17.79824 -17.35929 -16.79049 -16.46270 -16.35490 -16.21615 -15.82126 -15.25079 -14.97340 -14.70001 -14.43173 -14.31554 -14.18766 -14.15703 -13.91739 -13.48091 -13.20630 -12.97255 -12.87395 -12.66009 -12.55684 -12.31500 -12.13747 -11.95478 -11.93396 -11.89483 -11.86012 -11.60886 -11.52341 -11.38359 -11.29850 -11.24717 -10.07188 -9.89208 -9.62068 -9.47259 -8.62666 -8.30633 -6.37837 0.09342 0.64817 0.96479 1.28005 1.38724 1.50631 1.55214 2.23082 2.75394 2.81508 3.11297 3.70928 3.73971 3.86289 3.87737 3.93985 4.10591 4.26181 4.28126 4.35456 4.40659 4.45558 4.53505 4.57310 4.60543 4.68340 4.70876 4.71947 4.73623 4.82282 4.89510 4.97525 5.00085 5.05105 5.14089 5.18169 5.21318 5.29228 5.36703 5.38855 5.47054 5.52626 5.53667 5.62043 5.70043 5.85222 5.92911 6.11402 6.29433 6.30637 6.39381 6.79628 7.12700 8.11241 8.44387 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.004092 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.504444 B = 6841.156540 C = 8988.490097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C -0.047 4.047 4 C -0.147 4.147 5 C -0.268 4.268 6 C 0.123 3.877 7 C -0.046 4.046 8 C -0.123 4.123 9 C -0.120 4.120 10 C -0.115 4.115 11 C -0.084 4.084 12 C -0.055 4.055 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.109 4.109 18 N -0.477 5.477 19 C 0.215 3.785 20 C -0.453 4.453 21 H 0.084 0.916 22 C 0.026 3.974 23 N -0.747 5.747 24 Si 0.983 3.017 25 H -0.261 1.261 26 H -0.266 1.266 27 H -0.261 1.261 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 12.319 0.043 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.095 4.095 4 C -0.171 4.171 5 C -0.291 4.291 6 C -0.017 4.017 7 C -0.047 4.047 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.133 4.133 11 C -0.084 4.084 12 C -0.073 4.073 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.128 4.128 18 N -0.192 5.192 19 C 0.086 3.914 20 C -0.485 4.485 21 H 0.102 0.898 22 C -0.196 4.196 23 N -0.369 5.369 24 Si 0.804 3.196 25 H -0.185 1.185 26 H -0.190 1.190 27 H -0.185 1.185 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.956 12.232 0.039 12.584 hybrid contribution -1.073 -1.230 -0.020 1.632 sum 1.883 11.002 0.019 11.162 Atomic orbital electron populations 1.23126 0.78505 1.04455 1.00975 1.85882 1.21633 1.27122 1.90044 1.20424 0.93467 0.84794 1.10834 1.21259 0.99498 0.91735 1.04579 1.21420 0.93913 0.97682 1.16100 1.20368 0.90824 0.92872 0.97671 1.18898 0.93492 0.91454 1.00877 1.21389 1.00351 0.91430 1.00988 1.21311 0.94553 0.97663 1.00188 1.21216 0.93997 0.97697 1.00363 1.20002 0.95964 0.92502 0.99948 1.20780 0.89981 0.99643 0.96933 1.22484 0.98309 0.98497 0.95867 1.22505 0.96764 0.99977 0.96410 1.22352 0.99721 0.97117 0.96166 1.22226 0.99628 0.97309 0.96093 1.21516 0.94167 0.98527 0.98554 1.68831 1.36105 0.95950 1.18312 1.18593 0.86844 0.92657 0.93278 1.19686 0.91970 0.92828 1.43987 0.89784 1.26885 0.99162 1.00683 0.92861 1.70196 1.10828 1.26528 1.29397 0.85249 0.76872 0.77574 0.79921 1.18542 1.19000 1.18548 0.93006 0.92999 0.86722 0.84215 0.85026 0.84947 0.82673 0.83581 0.92740 0.90756 0.92578 0.91622 0.89885 0.90601 0.90505 0.92244 0.91913 0.86702 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.83 113.37 1.11 1.90 16 2 O -0.33 -15.51 9.61 -88.43 -0.85 -16.36 16 3 C -0.05 -2.42 6.74 23.26 0.16 -2.26 16 4 C -0.15 -6.63 9.11 22.50 0.21 -6.42 16 5 C -0.27 -12.24 9.46 22.73 0.22 -12.03 16 6 C 0.12 6.32 6.74 42.20 0.28 6.61 16 7 C -0.05 -2.07 5.88 -20.04 -0.12 -2.18 16 8 C -0.12 -4.28 9.42 22.50 0.21 -4.06 16 9 C -0.12 -3.31 10.03 22.24 0.22 -3.09 16 10 C -0.11 -3.18 8.09 22.32 0.18 -3.00 16 11 C -0.08 -2.86 4.68 -19.90 -0.09 -2.95 16 12 C -0.05 -1.59 3.13 -10.81 -0.03 -1.62 16 13 C -0.11 -2.69 6.27 31.70 0.20 -2.49 16 14 C -0.12 -2.13 6.91 31.91 0.22 -1.91 16 15 C -0.12 -2.02 6.83 31.67 0.22 -1.81 16 16 C -0.11 -2.73 6.23 31.32 0.20 -2.54 16 17 C -0.11 -4.78 9.20 22.50 0.21 -4.57 16 18 N -0.48 -27.63 6.90 -177.87 -1.23 -28.85 16 19 C 0.21 12.55 6.56 40.33 0.26 12.82 16 20 C -0.45 -26.04 8.94 23.38 0.21 -25.83 16 21 H 0.08 4.71 7.31 -2.91 -0.02 4.68 16 22 C 0.03 1.36 5.50 85.28 0.47 1.83 16 23 N -0.75 -41.01 11.08 21.84 0.24 -40.76 16 24 Si 0.98 40.05 29.56 68.60 2.03 42.08 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 26 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 27 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 28 H 0.05 1.52 7.69 -2.39 -0.02 1.51 16 29 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 30 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.14 5.12 6.43 -2.91 -0.02 5.11 16 32 H 0.13 5.00 6.16 -2.91 -0.02 4.98 16 33 H 0.13 4.11 6.16 -2.91 -0.02 4.10 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.15 3.06 7.78 -2.91 -0.02 3.03 16 36 H 0.05 1.83 7.90 -2.39 -0.02 1.82 16 37 H 0.07 1.66 6.92 -2.39 -0.02 1.65 16 38 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.54 7.27 -2.39 -0.02 1.52 16 45 H 0.11 5.88 7.05 -2.91 -0.02 5.86 16 46 H 0.28 13.84 8.29 -92.71 -0.77 13.07 16 Total: -1.00 -69.67 369.72 5.50 -64.17 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.98 Total: 33.35 kcal Atomic # 6 Polarization: -57.95 SS G_CDS: 4.33 Total: -53.62 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.98 Total: -69.62 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.85 Total: -16.36 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -69.67 5.50 -64.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244985740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.772 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds