Wall clock time and date at job start Sat Apr 11 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35679 * 116.99907 * 2 1 4 4 C 1.37984 * 120.19370 * 0.02562 * 3 2 1 5 5 C 1.39617 * 119.93121 * 179.97438 * 4 3 2 6 6 C 1.48031 * 119.83562 * 180.02562 * 5 4 3 7 7 C 1.39574 * 120.14237 * 359.73762 * 6 5 4 8 8 C 1.37949 * 119.85687 * 179.77337 * 7 6 5 9 9 C 1.38389 * 120.13596 * 0.51104 * 8 7 6 10 10 C 1.50701 * 119.85308 * 179.72668 * 9 8 7 11 11 H 1.08996 * 109.87810 * 200.72617 * 10 9 8 12 12 C 1.54311 * 109.89256 * 79.68526 * 10 9 8 13 13 C 1.55403 * 102.90180 * 218.40698 * 12 10 9 14 14 C 1.54903 * 101.73977 * 35.48359 * 13 12 10 15 15 N 1.47447 * 109.88646 * 321.74917 * 10 9 8 16 16 C 1.38373 * 120.29154 * 359.74094 * 9 8 7 17 17 C 1.37953 * 120.14300 * 0.02562 * 16 9 8 18 18 C 1.40068 * 120.32521 * 0.02562 * 5 4 3 19 19 C 1.36112 * 120.39684 * 0.23875 * 18 5 4 20 20 C 1.40914 * 120.05860 * 359.49424 * 19 18 5 21 21 C 1.40831 * 120.16475 * 180.23114 * 20 19 18 22 22 H 1.08002 * 120.00674 * 205.10214 * 21 20 19 23 23 C 1.40012 * 119.99810 * 25.10051 * 21 20 19 24 24 N 1.30833 * 120.00077 * 17.65714 * 23 21 20 25 25 Si 1.86799 * 120.00202 * 197.65100 * 23 21 20 26 26 H 1.48504 * 109.46724 * 60.00116 * 25 23 21 27 27 H 1.48494 * 109.47266 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47090 * 300.00664 * 25 23 21 29 29 H 1.08997 * 109.47742 * 59.99453 * 1 2 3 30 30 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47169 * 299.98877 * 1 2 3 32 32 H 1.07998 * 120.03131 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.07412 * 0.02562 * 7 6 5 34 34 H 1.07988 * 119.93372 * 180.25524 * 8 7 6 35 35 H 1.09000 * 110.70789 * 336.69699 * 12 10 9 36 36 H 1.08994 * 110.70660 * 99.93102 * 12 10 9 37 37 H 1.08994 * 110.87362 * 277.39733 * 13 12 10 38 38 H 1.09003 * 111.02098 * 153.63377 * 13 12 10 39 39 H 1.08998 * 110.37625 * 204.18918 * 14 13 12 40 40 H 1.08999 * 110.37858 * 81.84758 * 14 13 12 41 41 H 1.00903 * 110.99907 * 356.14727 * 15 10 9 42 42 H 1.08004 * 119.93214 * 180.02562 * 16 9 8 43 43 H 1.07999 * 120.07256 * 180.02562 * 17 16 9 44 44 H 1.08001 * 119.80678 * 179.97438 * 18 5 4 45 45 H 1.07999 * 119.97161 * 179.72307 * 19 18 5 46 46 H 0.96992 * 120.00466 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2973 2.3687 0.0005 5 6 1.9368 3.6098 0.0011 6 6 1.1326 4.8526 0.0022 7 6 -0.2615 4.7854 -0.0028 8 6 -1.0051 5.9473 0.0031 9 6 -0.3715 7.1777 0.0032 10 6 -1.1901 8.4430 0.0033 11 1 -0.5865 9.2749 -0.3594 12 6 -1.6934 8.7425 1.4309 13 6 -3.1296 9.2835 1.1862 14 6 -3.5875 8.4271 -0.0206 15 7 -2.3768 8.2727 -0.8551 16 6 1.0103 7.2512 0.0028 17 6 1.7654 6.0967 0.0018 18 6 3.3355 3.6846 0.0005 19 6 4.0859 2.5491 -0.0054 20 6 3.4576 1.2878 -0.0003 21 6 4.2320 0.1115 -0.0015 22 1 3.8198 -0.8061 -0.3948 23 6 5.5363 0.1315 0.5071 24 7 5.9205 1.1114 1.2841 25 14 6.7279 -1.2411 0.0764 26 1 6.9176 -1.2881 -1.3957 27 1 8.0338 -0.9881 0.7364 28 1 6.1793 -2.5385 0.5464 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2185 2.3164 0.0005 33 1 -0.7570 3.8258 -0.0071 34 1 -2.0838 5.8967 0.0034 35 1 -1.7219 7.8315 2.0287 36 1 -1.0704 9.4987 1.9085 37 1 -3.1070 10.3421 0.9276 38 1 -3.7664 9.1083 2.0533 39 1 -4.3690 8.9437 -0.5778 40 1 -3.9419 7.4534 0.3176 41 1 -2.3656 7.3738 -1.3133 42 1 1.4987 8.2145 0.0033 43 1 2.8438 6.1554 0.0020 44 1 3.8214 4.6491 0.0005 45 1 5.1639 2.6148 -0.0103 46 1 6.8241 1.1255 1.6362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245352497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:56 Heat of formation + Delta-G solvation = 1.647818 kcal Electronic energy + Delta-G solvation = -26104.113976 eV Core-core repulsion = 22536.807101 eV Total energy + Delta-G solvation = -3567.306876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.79669 -38.80677 -37.60295 -36.05540 -34.03645 -31.89519 -30.86008 -30.14971 -29.73526 -28.83930 -27.52656 -26.61822 -24.86116 -22.77779 -22.33198 -21.23743 -20.76129 -20.30410 -19.67912 -17.74906 -17.14133 -16.50097 -15.98847 -15.49354 -15.04560 -15.02691 -14.71345 -14.41759 -14.13055 -14.00683 -13.51025 -13.25713 -13.17119 -12.79247 -12.63259 -12.51072 -12.35701 -12.21501 -11.92205 -11.60344 -11.57567 -11.36221 -11.31956 -11.15303 -10.96872 -10.92307 -10.76147 -10.55847 -10.46543 -10.11406 -9.72988 -9.64900 -9.37483 -8.74651 -8.55751 -8.30700 -7.34335 -7.09212 -6.84982 -4.35427 1.44646 1.82070 2.72981 2.95252 2.98998 3.01875 3.13215 3.81068 4.06926 4.29461 4.42721 4.55138 4.60531 4.64972 4.84208 5.02608 5.17044 5.26252 5.35478 5.39298 5.50687 5.58821 5.65514 5.68029 5.71218 5.74303 5.77171 5.81908 5.83494 5.91833 5.96701 6.06739 6.14300 6.26497 6.40203 6.49709 6.67856 6.76705 6.81228 6.90049 6.92569 7.00367 7.20943 7.25325 7.27758 7.40850 7.60323 7.68916 7.96438 8.04097 8.28327 8.51414 8.63887 8.92823 9.97096 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002597 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.583527 B =10780.190567 C =11659.475645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.005 3.995 4 C -0.148 4.148 5 C -0.180 4.180 6 C 0.025 3.975 7 C -0.141 4.141 8 C -0.109 4.109 9 C -0.145 4.145 10 C 0.125 3.875 11 H 0.086 0.914 12 C -0.134 4.134 13 C -0.130 4.130 14 C 0.042 3.958 15 N -0.680 5.680 16 C -0.098 4.098 17 C -0.140 4.140 18 C -0.091 4.091 19 C -0.158 4.158 20 C 0.110 3.890 21 C -0.426 4.426 22 H 0.087 0.913 23 C 0.070 3.930 24 N -0.778 5.778 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.277 1.277 28 H -0.263 1.263 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.344 0.656 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 9.438 -0.319 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.039 4.039 4 C -0.167 4.167 5 C -0.181 4.181 6 C 0.025 3.975 7 C -0.160 4.160 8 C -0.128 4.128 9 C -0.146 4.146 10 C 0.016 3.984 11 H 0.104 0.896 12 C -0.173 4.173 13 C -0.168 4.168 14 C -0.087 4.087 15 N -0.311 5.311 16 C -0.116 4.116 17 C -0.158 4.158 18 C -0.109 4.109 19 C -0.177 4.177 20 C 0.107 3.893 21 C -0.454 4.454 22 H 0.105 0.895 23 C -0.149 4.149 24 N -0.402 5.402 25 Si 0.738 3.262 26 H -0.185 1.185 27 H -0.202 1.202 28 H -0.187 1.187 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.162 0.838 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.143 0.857 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.548 9.981 -0.434 14.529 hybrid contribution 0.279 -1.289 0.497 1.409 sum -10.269 8.693 0.063 13.454 Atomic orbital electron populations 1.22738 0.81677 1.01840 0.99930 1.85963 1.18263 1.28060 1.90422 1.19062 0.92270 0.82705 1.09869 1.20666 0.97341 0.92027 1.06678 1.17784 0.92394 0.90069 1.17883 1.18983 0.92394 0.92961 0.93167 1.21084 0.93609 0.97547 1.03710 1.20607 0.98453 0.92220 1.01470 1.20010 0.94218 0.94211 1.06167 1.21097 0.90883 0.94902 0.91546 0.89641 1.22929 0.96113 1.01461 0.96772 1.22750 0.96279 1.00069 0.97696 1.22845 0.93572 0.98603 0.93650 1.62115 1.01064 1.38856 1.29094 1.20774 0.92938 0.97907 1.00005 1.21213 0.99836 0.91666 1.03046 1.20471 0.92460 0.97378 1.00609 1.20758 0.99691 0.90504 1.06797 1.17164 0.87447 0.94102 0.90630 1.19581 0.96379 0.96925 1.32476 0.89470 1.26051 0.98996 0.97213 0.92671 1.69811 1.19464 1.30198 1.20758 0.86247 0.78642 0.81150 0.80139 1.18550 1.20152 1.18723 0.94206 0.89932 0.94161 0.88149 0.86678 0.87655 0.91049 0.90786 0.90832 0.91044 0.90552 0.94139 0.83757 0.86840 0.86075 0.88739 0.85691 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.06 9.77 -18.74 -0.18 -7.24 16 3 C 0.00 0.12 6.71 -38.43 -0.26 -0.14 16 4 C -0.15 -3.28 8.40 -39.16 -0.33 -3.61 16 5 C -0.18 -3.95 5.89 -104.68 -0.62 -4.57 16 6 C 0.03 0.48 5.88 -104.88 -0.62 -0.14 16 7 C -0.14 -2.40 9.43 -39.19 -0.37 -2.77 16 8 C -0.11 -1.59 8.68 -39.63 -0.34 -1.94 16 9 C -0.14 -2.03 4.73 -104.52 -0.49 -2.53 16 10 C 0.12 1.48 3.68 -67.88 -0.25 1.23 16 11 H 0.09 1.01 8.02 -51.93 -0.42 0.60 16 12 C -0.13 -1.39 6.48 -24.77 -0.16 -1.55 16 13 C -0.13 -1.14 7.08 -24.45 -0.17 -1.32 16 14 C 0.04 0.40 7.58 -2.30 -0.02 0.38 16 15 N -0.68 -7.75 7.15 -105.03 -0.75 -8.50 16 16 C -0.10 -1.45 9.66 -39.64 -0.38 -1.84 16 17 C -0.14 -2.41 9.43 -39.19 -0.37 -2.78 16 18 C -0.09 -2.06 9.35 -39.66 -0.37 -2.43 16 19 C -0.16 -3.94 8.61 -39.33 -0.34 -4.28 16 20 C 0.11 2.86 5.58 -106.66 -0.60 2.27 16 21 C -0.43 -11.00 8.70 -37.94 -0.33 -11.33 16 22 H 0.09 2.23 7.64 -52.49 -0.40 1.83 16 23 C 0.07 1.69 5.13 -17.31 -0.09 1.61 16 24 N -0.78 -19.14 10.97 55.55 0.61 -18.53 16 25 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 26 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 27 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 28 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 29 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.10 1.96 4.41 -52.49 -0.23 1.73 16 33 H 0.12 1.87 6.18 -52.48 -0.32 1.55 16 34 H 0.11 1.32 7.22 -52.49 -0.38 0.95 16 35 H 0.07 0.81 7.81 -51.93 -0.41 0.41 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.34 3.99 6.75 -39.29 -0.27 3.73 16 42 H 0.11 1.42 8.04 -52.48 -0.42 1.00 16 43 H 0.12 2.01 6.18 -52.49 -0.32 1.69 16 44 H 0.09 1.92 6.16 -52.49 -0.32 1.60 16 45 H 0.13 3.17 6.17 -52.49 -0.32 2.84 16 46 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -27.21 366.68 -11.23 -38.44 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.28 Total: 11.58 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: -5.11 Total: -34.18 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: -0.14 Total: -27.04 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.18 Total: -7.24 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.21 -11.23 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245352497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.085 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds