Wall clock time and date at job start Sat Apr 11 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35679 * 116.99907 * 2 1 4 4 C 1.37984 * 120.19370 * 0.02562 * 3 2 1 5 5 C 1.39617 * 119.93121 * 179.97438 * 4 3 2 6 6 C 1.48031 * 119.83562 * 180.02562 * 5 4 3 7 7 C 1.39574 * 120.14237 * 359.73762 * 6 5 4 8 8 C 1.37949 * 119.85687 * 179.77337 * 7 6 5 9 9 C 1.38389 * 120.13596 * 0.51104 * 8 7 6 10 10 C 1.50701 * 119.85308 * 179.72668 * 9 8 7 11 11 H 1.08996 * 109.87810 * 200.72617 * 10 9 8 12 12 C 1.54311 * 109.89256 * 79.68526 * 10 9 8 13 13 C 1.55403 * 102.90180 * 218.40698 * 12 10 9 14 14 C 1.54903 * 101.73977 * 35.48359 * 13 12 10 15 15 N 1.47447 * 109.88646 * 321.74917 * 10 9 8 16 16 C 1.38373 * 120.29154 * 359.74094 * 9 8 7 17 17 C 1.37953 * 120.14300 * 0.02562 * 16 9 8 18 18 C 1.40068 * 120.32521 * 0.02562 * 5 4 3 19 19 C 1.36112 * 120.39684 * 0.23875 * 18 5 4 20 20 C 1.40914 * 120.05860 * 359.49424 * 19 18 5 21 21 C 1.40831 * 120.16475 * 180.23114 * 20 19 18 22 22 H 1.08002 * 120.00674 * 205.10214 * 21 20 19 23 23 C 1.40012 * 119.99810 * 25.10051 * 21 20 19 24 24 N 1.30833 * 120.00077 * 17.65714 * 23 21 20 25 25 Si 1.86799 * 120.00202 * 197.65100 * 23 21 20 26 26 H 1.48504 * 109.46724 * 60.00116 * 25 23 21 27 27 H 1.48494 * 109.47266 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47090 * 300.00664 * 25 23 21 29 29 H 1.08997 * 109.47742 * 59.99453 * 1 2 3 30 30 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47169 * 299.98877 * 1 2 3 32 32 H 1.07998 * 120.03131 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.07412 * 0.02562 * 7 6 5 34 34 H 1.07988 * 119.93372 * 180.25524 * 8 7 6 35 35 H 1.09000 * 110.70789 * 336.69699 * 12 10 9 36 36 H 1.08994 * 110.70660 * 99.93102 * 12 10 9 37 37 H 1.08994 * 110.87362 * 277.39733 * 13 12 10 38 38 H 1.09003 * 111.02098 * 153.63377 * 13 12 10 39 39 H 1.08998 * 110.37625 * 204.18918 * 14 13 12 40 40 H 1.08999 * 110.37858 * 81.84758 * 14 13 12 41 41 H 1.00903 * 110.99907 * 356.14727 * 15 10 9 42 42 H 1.08004 * 119.93214 * 180.02562 * 16 9 8 43 43 H 1.07999 * 120.07256 * 180.02562 * 17 16 9 44 44 H 1.08001 * 119.80678 * 179.97438 * 18 5 4 45 45 H 1.07999 * 119.97161 * 179.72307 * 19 18 5 46 46 H 0.96992 * 120.00466 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2973 2.3687 0.0005 5 6 1.9368 3.6098 0.0011 6 6 1.1326 4.8526 0.0022 7 6 -0.2615 4.7854 -0.0028 8 6 -1.0051 5.9473 0.0031 9 6 -0.3715 7.1777 0.0032 10 6 -1.1901 8.4430 0.0033 11 1 -0.5865 9.2749 -0.3594 12 6 -1.6934 8.7425 1.4309 13 6 -3.1296 9.2835 1.1862 14 6 -3.5875 8.4271 -0.0206 15 7 -2.3768 8.2727 -0.8551 16 6 1.0103 7.2512 0.0028 17 6 1.7654 6.0967 0.0018 18 6 3.3355 3.6846 0.0005 19 6 4.0859 2.5491 -0.0054 20 6 3.4576 1.2878 -0.0003 21 6 4.2320 0.1115 -0.0015 22 1 3.8198 -0.8061 -0.3948 23 6 5.5363 0.1315 0.5071 24 7 5.9205 1.1114 1.2841 25 14 6.7279 -1.2411 0.0764 26 1 6.9176 -1.2881 -1.3957 27 1 8.0338 -0.9881 0.7364 28 1 6.1793 -2.5385 0.5464 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2185 2.3164 0.0005 33 1 -0.7570 3.8258 -0.0071 34 1 -2.0838 5.8967 0.0034 35 1 -1.7219 7.8315 2.0287 36 1 -1.0704 9.4987 1.9085 37 1 -3.1070 10.3421 0.9276 38 1 -3.7664 9.1083 2.0533 39 1 -4.3690 8.9437 -0.5778 40 1 -3.9419 7.4534 0.3176 41 1 -2.3656 7.3738 -1.3133 42 1 1.4987 8.2145 0.0033 43 1 2.8438 6.1554 0.0020 44 1 3.8214 4.6491 0.0005 45 1 5.1639 2.6148 -0.0103 46 1 6.8241 1.1255 1.6362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245352497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:04:55 Heat of formation + Delta-G solvation = -11.858868 kcal Electronic energy + Delta-G solvation = -26104.699670 eV Core-core repulsion = 22536.807101 eV Total energy + Delta-G solvation = -3567.892570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.02456 -40.34756 -38.80437 -37.67672 -35.72154 -33.30395 -32.11782 -31.26611 -30.96679 -30.52367 -28.77459 -28.09190 -26.41859 -24.08912 -23.78916 -22.14840 -21.96895 -21.89915 -20.94108 -19.47280 -18.54968 -17.77229 -17.29497 -16.82179 -16.48639 -16.33463 -16.26409 -15.85793 -15.45925 -15.35560 -14.80617 -14.54535 -14.21988 -14.13205 -14.05496 -13.96451 -13.75817 -13.27634 -13.18764 -13.05588 -12.87942 -12.72693 -12.65306 -12.51067 -12.18321 -12.09621 -12.00457 -11.90668 -11.63910 -11.57048 -11.40251 -11.31138 -11.10549 -10.08776 -9.82755 -9.42060 -9.04844 -8.79551 -8.57019 -6.21902 0.02329 0.54384 1.10533 1.13218 1.37322 1.48965 1.56279 2.19021 2.59016 2.87281 3.02127 3.41869 3.66285 3.69768 3.80979 3.94713 3.96175 4.05022 4.11169 4.25160 4.31484 4.43866 4.45248 4.47624 4.49495 4.60771 4.64978 4.66541 4.71357 4.91137 4.94497 4.96956 5.03928 5.07735 5.12780 5.16065 5.20388 5.30440 5.35292 5.37572 5.49344 5.65506 5.68309 5.79920 5.89808 5.96040 6.15847 6.21699 6.22526 6.39609 6.47010 6.71222 6.81977 7.17715 8.25818 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002597 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.583527 B =10780.190567 C =11659.475645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.156 4.156 5 C -0.166 4.166 6 C -0.014 4.014 7 C -0.140 4.140 8 C -0.108 4.108 9 C -0.124 4.124 10 C 0.125 3.875 11 H 0.090 0.910 12 C -0.134 4.134 13 C -0.124 4.124 14 C 0.039 3.961 15 N -0.688 5.688 16 C -0.102 4.102 17 C -0.142 4.142 18 C -0.106 4.106 19 C -0.173 4.173 20 C 0.070 3.930 21 C -0.470 4.470 22 H 0.074 0.926 23 C 0.033 3.967 24 N -0.815 5.815 25 Si 0.984 3.016 26 H -0.259 1.259 27 H -0.263 1.263 28 H -0.261 1.261 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.342 0.658 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 11.637 -0.288 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C -0.052 4.052 4 C -0.175 4.175 5 C -0.168 4.168 6 C -0.014 4.014 7 C -0.158 4.158 8 C -0.126 4.126 9 C -0.126 4.126 10 C 0.015 3.985 11 H 0.108 0.892 12 C -0.172 4.172 13 C -0.162 4.162 14 C -0.090 4.090 15 N -0.319 5.319 16 C -0.120 4.120 17 C -0.160 4.160 18 C -0.125 4.125 19 C -0.192 4.192 20 C 0.067 3.933 21 C -0.498 4.498 22 H 0.093 0.907 23 C -0.183 4.183 24 N -0.440 5.440 25 Si 0.804 3.196 26 H -0.184 1.184 27 H -0.187 1.187 28 H -0.185 1.185 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.075 12.198 -0.402 17.886 hybrid contribution 0.675 -1.619 0.470 1.816 sum -12.401 10.579 0.068 16.300 Atomic orbital electron populations 1.23084 0.78718 1.04301 1.00823 1.85912 1.21403 1.27629 1.90384 1.19255 0.92231 0.83977 1.09697 1.20941 0.98636 0.91438 1.06497 1.18207 0.92436 0.91563 1.14578 1.18970 0.93273 0.92302 0.96828 1.21229 0.92847 0.98842 1.02931 1.20841 0.99663 0.91533 1.00564 1.20422 0.94248 0.95235 1.02655 1.21173 0.90961 0.93522 0.92810 0.89214 1.22914 0.97383 1.01467 0.95458 1.22753 0.95301 1.00210 0.97945 1.22958 0.93026 0.99197 0.93830 1.62156 1.01537 1.38744 1.29416 1.21080 0.93392 0.98240 0.99294 1.21350 1.00226 0.91904 1.02548 1.20693 0.93197 0.97510 1.01053 1.20738 0.99311 0.91254 1.07931 1.17524 0.88876 0.94647 0.92236 1.19628 0.98147 0.96655 1.35395 0.90743 1.26814 0.99917 0.99634 0.91900 1.69849 1.20163 1.32102 1.21891 0.85221 0.76657 0.77918 0.79779 1.18375 1.18729 1.18544 0.92985 0.86855 0.93334 0.85536 0.86162 0.85166 0.92023 0.89758 0.90213 0.89623 0.89576 0.93661 0.83984 0.84154 0.86115 0.86914 0.87092 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.81 113.37 1.11 1.95 16 2 O -0.34 -15.74 9.77 -89.97 -0.88 -16.62 16 3 C -0.01 -0.37 6.71 23.01 0.15 -0.21 16 4 C -0.16 -7.01 8.40 22.54 0.19 -6.82 16 5 C -0.17 -7.40 5.89 -19.90 -0.12 -7.52 16 6 C -0.01 -0.51 5.88 -20.03 -0.12 -0.62 16 7 C -0.14 -4.48 9.43 22.52 0.21 -4.27 16 8 C -0.11 -2.81 8.68 22.24 0.19 -2.61 16 9 C -0.12 -3.08 4.73 -19.80 -0.09 -3.17 16 10 C 0.12 2.48 3.68 44.51 0.16 2.64 16 11 H 0.09 1.77 8.02 -2.39 -0.02 1.75 16 12 C -0.13 -2.26 6.48 31.87 0.21 -2.05 16 13 C -0.12 -1.69 7.08 32.07 0.23 -1.46 16 14 C 0.04 0.58 7.58 86.77 0.66 1.24 16 15 N -0.69 -13.17 7.15 -486.21 -3.47 -16.65 16 16 C -0.10 -2.74 9.66 22.23 0.21 -2.52 16 17 C -0.14 -4.70 9.43 22.53 0.21 -4.49 16 18 C -0.11 -5.02 9.35 22.22 0.21 -4.81 16 19 C -0.17 -9.17 8.61 22.43 0.19 -8.97 16 20 C 0.07 3.88 5.58 -21.19 -0.12 3.76 16 21 C -0.47 -25.96 8.70 23.33 0.20 -25.76 16 22 H 0.07 4.10 7.64 -2.91 -0.02 4.08 16 23 C 0.03 1.69 5.13 85.27 0.44 2.12 16 24 N -0.81 -42.33 10.97 21.84 0.24 -42.09 16 25 Si 0.98 38.36 29.60 68.60 2.03 40.39 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 28 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 29 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.05 1.48 7.66 -2.39 -0.02 1.46 16 32 H 0.13 4.83 4.41 -2.91 -0.01 4.81 16 33 H 0.12 3.64 6.18 -2.91 -0.02 3.63 16 34 H 0.13 2.76 7.22 -2.92 -0.02 2.74 16 35 H 0.06 1.18 7.81 -2.39 -0.02 1.16 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.34 6.74 6.75 -89.69 -0.60 6.13 16 42 H 0.14 3.01 8.04 -2.91 -0.02 2.99 16 43 H 0.12 3.92 6.18 -2.91 -0.02 3.90 16 44 H 0.11 4.72 6.16 -2.91 -0.02 4.71 16 45 H 0.11 6.06 6.17 -2.91 -0.02 6.04 16 46 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 Total: -1.00 -62.68 366.68 2.46 -60.22 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.40 Total: 38.33 kcal Atomic # 6 Polarization: -67.73 SS G_CDS: 4.14 Total: -63.59 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -3.24 Total: -58.74 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.88 Total: -16.62 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -62.68 2.46 -60.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245352497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.364 kcal (2) G-P(sol) polarization free energy of solvation -62.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds