Wall clock time and date at job start Sat Apr 11 2020 01:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35609 * 117.00087 * 2 1 4 4 C 1.39149 * 119.87837 * 0.02562 * 3 2 1 5 5 C 1.36416 * 120.43595 * 180.02562 * 4 3 2 6 6 C 1.40909 * 120.18869 * 359.74341 * 5 4 3 7 7 C 1.41245 * 120.11738 * 180.27445 * 6 5 4 8 8 H 1.07997 * 120.00244 * 330.33800 * 7 6 5 9 9 C 1.39864 * 119.99783 * 150.34254 * 7 6 5 10 10 N 1.30894 * 120.00237 * 161.71922 * 9 7 6 11 11 Si 1.86806 * 119.99737 * 341.71371 * 9 7 6 12 12 H 1.48501 * 109.46852 * 95.42060 * 11 9 7 13 13 H 1.48499 * 109.47018 * 215.41513 * 11 9 7 14 14 H 1.48494 * 109.47044 * 335.41761 * 11 9 7 15 15 C 1.40611 * 119.76322 * 0.49377 * 6 5 4 16 16 C 1.38601 * 119.56862 * 359.50533 * 15 6 5 17 17 C 1.48332 * 120.09702 * 180.23486 * 16 15 6 18 18 C 1.39363 * 120.12208 * 129.72744 * 17 16 15 19 19 C 1.38018 * 119.87403 * 179.71849 * 18 17 16 20 20 C 1.38323 * 120.12199 * 0.54075 * 19 18 17 21 21 C 1.50704 * 119.87748 * 179.74023 * 20 19 18 22 22 H 1.08997 * 109.91053 * 158.91751 * 21 20 19 23 23 C 1.53999 * 109.91439 * 280.02084 * 21 20 19 24 24 C 1.54598 * 105.13629 * 120.57470 * 23 21 20 25 25 C 1.54931 * 102.92414 * 21.95705 * 24 23 21 26 26 N 1.47905 * 109.91459 * 37.60506 * 21 20 19 27 27 C 1.38330 * 120.25155 * 359.76170 * 20 19 18 28 28 C 1.38010 * 120.11983 * 359.95313 * 27 20 19 29 29 H 1.08997 * 109.46688 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47074 * 300.00245 * 1 2 3 31 31 H 1.08998 * 109.46779 * 60.00699 * 1 2 3 32 32 H 1.08002 * 119.78432 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.90516 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99855 * 179.97438 * 10 9 7 35 35 H 1.07998 * 120.21615 * 179.79396 * 15 6 5 36 36 H 1.07997 * 120.06463 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.93859 * 180.27602 * 19 18 17 38 38 H 1.09000 * 110.30547 * 239.48933 * 23 21 20 39 39 H 1.08995 * 110.30712 * 1.55951 * 23 21 20 40 40 H 1.09000 * 110.72137 * 140.31401 * 24 23 21 41 41 H 1.09001 * 110.72325 * 263.41831 * 24 23 21 42 42 H 1.08999 * 110.67008 * 81.02106 * 25 24 23 43 43 H 1.09001 * 110.67037 * 203.98318 * 25 24 23 44 44 H 1.00896 * 110.99912 * 335.84058 * 26 21 20 45 45 H 1.07998 * 119.93795 * 179.97438 * 27 20 19 46 46 H 1.08008 * 120.06071 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2843 2.3737 0.0005 5 6 1.8918 3.5951 0.0000 6 6 3.2979 3.6872 0.0044 7 6 3.9253 4.9526 0.0097 8 1 3.4384 5.7987 -0.4523 9 6 5.1772 5.1099 0.6131 10 7 5.9174 6.1498 0.3234 11 14 5.7928 3.8359 1.8328 12 1 6.6591 2.8558 1.1299 13 1 6.5736 4.5100 2.9010 14 1 4.6350 3.1292 2.4371 15 6 4.0742 2.5148 -0.0012 16 6 3.4467 1.2790 -0.0006 17 6 4.2541 0.0347 -0.0012 18 6 3.9894 -0.9713 0.9261 19 6 4.7401 -2.1295 0.9172 20 6 5.7609 -2.2879 -0.0027 21 6 6.5810 -3.5523 -0.0037 22 1 7.0607 -3.6828 -0.9737 23 6 7.6481 -3.4863 1.1047 24 6 7.3514 -4.6940 2.0231 25 6 6.5507 -5.6444 1.0979 26 7 5.7160 -4.7141 0.2955 27 6 6.0322 -1.2900 -0.9214 28 6 5.2841 -0.1303 -0.9254 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 0.2062 2.3108 0.0005 33 1 1.2933 4.4942 0.0009 34 1 6.7855 6.2590 0.7422 35 1 5.1524 2.5768 -0.0013 36 1 3.1956 -0.8467 1.6478 37 1 4.5329 -2.9116 1.6325 38 1 8.6459 -3.5739 0.6748 39 1 7.5575 -2.5540 1.6620 40 1 8.2777 -5.1654 2.3516 41 1 6.7508 -4.3887 2.8799 42 1 7.2230 -6.2110 0.4537 43 1 5.9255 -6.3168 1.6854 44 1 4.8948 -4.4308 0.8088 45 1 6.8307 -1.4189 -1.6371 46 1 5.4965 0.6481 -1.6435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245352563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:01 Heat of formation + Delta-G solvation = 4.859624 kcal Electronic energy + Delta-G solvation = -26769.477640 eV Core-core repulsion = 23202.310039 eV Total energy + Delta-G solvation = -3567.167601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.94572 -39.08710 -37.59209 -36.52087 -33.48397 -32.46734 -30.76567 -30.04251 -29.90639 -29.73637 -27.23072 -26.73724 -24.55829 -23.21599 -22.35478 -21.58552 -20.97717 -20.42625 -19.69432 -17.59321 -17.33050 -16.93486 -15.67943 -15.49800 -15.29331 -15.06416 -14.86333 -14.64675 -14.45358 -13.88475 -13.66934 -13.42107 -13.14936 -13.01019 -12.98279 -12.68652 -12.58744 -12.28380 -11.95833 -11.82150 -11.53247 -11.49790 -11.35639 -11.11961 -11.07448 -10.81773 -10.69761 -10.65409 -10.29099 -10.16191 -9.97166 -9.59779 -9.10963 -8.91589 -8.58323 -8.48175 -7.64612 -7.14122 -6.94272 -4.42688 1.48067 1.77142 2.51031 2.56244 3.11183 3.18745 3.30830 3.96557 3.97294 4.12089 4.24868 4.44396 4.53424 4.57949 4.84262 4.96137 5.15015 5.19539 5.27678 5.29125 5.35869 5.40641 5.50101 5.56656 5.58947 5.66774 5.67862 5.72938 5.81614 5.83272 5.87636 5.98062 6.05381 6.14133 6.30048 6.37131 6.48939 6.57473 6.67165 6.72831 6.84438 6.85623 6.98653 7.20072 7.21265 7.28616 7.31554 7.48066 7.72476 7.85333 8.23820 8.34737 8.61639 8.78458 10.08681 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.004045 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.482691 B = 6920.241494 C = 8560.012809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.013 3.987 4 C -0.159 4.159 5 C -0.168 4.168 6 C 0.071 3.929 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.086 3.914 10 N -0.811 5.811 11 Si 0.901 3.099 12 H -0.268 1.268 13 H -0.290 1.290 14 H -0.245 1.245 15 C -0.192 4.192 16 C -0.044 4.044 17 C -0.012 4.012 18 C -0.091 4.091 19 C -0.122 4.122 20 C -0.102 4.102 21 C 0.118 3.882 22 H 0.090 0.910 23 C -0.145 4.145 24 C -0.158 4.158 25 C 0.040 3.960 26 N -0.670 5.670 27 C -0.113 4.113 28 C -0.108 4.108 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.284 0.716 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.341 0.659 45 H 0.118 0.882 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -17.569 2.476 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C -0.031 4.031 4 C -0.178 4.178 5 C -0.187 4.187 6 C 0.068 3.932 7 C -0.478 4.478 8 H 0.109 0.891 9 C -0.132 4.132 10 N -0.436 5.436 11 Si 0.727 3.273 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.168 1.168 15 C -0.211 4.211 16 C -0.044 4.044 17 C -0.012 4.012 18 C -0.109 4.109 19 C -0.140 4.140 20 C -0.102 4.102 21 C 0.008 3.992 22 H 0.108 0.892 23 C -0.184 4.184 24 C -0.197 4.197 25 C -0.089 4.089 26 N -0.300 5.300 27 C -0.132 4.132 28 C -0.126 4.126 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.160 0.840 45 H 0.136 0.864 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.483 -17.903 1.825 18.002 hybrid contribution 0.197 0.391 1.412 1.478 sum 0.681 -17.512 3.237 17.822 Atomic orbital electron populations 1.22760 0.80796 1.02037 1.00411 1.85891 1.19152 1.27852 1.90791 1.18454 0.90584 0.83352 1.10712 1.20508 0.97912 0.92751 1.06624 1.20704 0.94526 0.95529 1.07983 1.17627 0.91531 0.92822 0.91227 1.19345 1.00940 0.95409 1.32141 0.89126 1.26072 0.95147 0.95807 0.96206 1.69719 1.09935 1.28105 1.35860 0.86460 0.80125 0.80383 0.80321 1.19407 1.21720 1.16772 1.20975 0.98287 0.90753 1.11127 1.17741 0.89126 0.91830 1.05737 1.18892 0.94318 0.93568 0.94427 1.21127 0.98719 0.92662 0.98353 1.20643 0.96636 0.97595 0.99139 1.19786 0.97451 0.95760 0.97211 1.21254 0.91678 0.87206 0.99066 0.89212 1.22888 0.99443 0.98972 0.97098 1.23121 1.01160 0.96721 0.98710 1.23124 0.96044 0.95482 0.94288 1.62926 1.07754 1.13220 1.46080 1.20801 0.99925 0.93700 0.98738 1.21300 0.95192 0.97392 0.98693 0.89796 0.93807 0.93784 0.87755 0.87696 0.90539 0.87200 0.86017 0.87049 0.91135 0.90871 0.90989 0.91525 0.90262 0.90852 0.84002 0.86363 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 9.80 101.05 0.99 1.49 16 2 O -0.32 -5.99 8.84 -18.53 -0.16 -6.16 16 3 C 0.01 0.27 6.63 -38.44 -0.25 0.01 16 4 C -0.16 -3.26 8.95 -39.90 -0.36 -3.62 16 5 C -0.17 -3.79 9.72 -39.23 -0.38 -4.17 16 6 C 0.07 1.76 5.10 -106.85 -0.55 1.21 16 7 C -0.45 -11.97 9.55 -37.83 -0.36 -12.33 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.09 2.24 5.40 -17.34 -0.09 2.15 16 10 N -0.81 -21.59 13.93 55.54 0.77 -20.81 16 11 Si 0.90 20.92 24.52 -169.99 -4.17 16.75 16 12 H -0.27 -6.10 6.70 56.52 0.38 -5.72 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.24 -5.83 6.87 56.52 0.39 -5.45 16 15 C -0.19 -4.59 6.62 -38.55 -0.26 -4.85 16 16 C -0.04 -0.96 5.48 -104.80 -0.57 -1.54 16 17 C -0.01 -0.23 5.26 -104.91 -0.55 -0.79 16 18 C -0.09 -1.58 8.78 -39.24 -0.34 -1.93 16 19 C -0.12 -1.79 8.96 -39.63 -0.36 -2.14 16 20 C -0.10 -1.44 4.75 -104.55 -0.50 -1.94 16 21 C 0.12 1.38 3.62 -67.79 -0.25 1.13 16 22 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 23 C -0.14 -1.50 6.56 -25.37 -0.17 -1.67 16 24 C -0.16 -1.38 7.06 -24.87 -0.18 -1.55 16 25 C 0.04 0.35 7.55 -1.90 -0.01 0.34 16 26 N -0.67 -7.44 7.39 -104.34 -0.77 -8.21 16 27 C -0.11 -1.73 9.66 -39.63 -0.38 -2.11 16 28 C -0.11 -1.94 9.51 -39.25 -0.37 -2.31 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.57 7.64 -51.93 -0.40 0.18 16 31 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 32 H 0.10 1.81 6.26 -52.49 -0.33 1.48 16 33 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 34 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 35 H 0.11 2.66 4.71 -52.49 -0.25 2.41 16 36 H 0.12 2.10 7.71 -52.49 -0.40 1.70 16 37 H 0.11 1.36 6.55 -52.49 -0.34 1.02 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.34 3.76 6.18 -39.29 -0.24 3.51 16 45 H 0.12 1.52 8.05 -52.49 -0.42 1.09 16 46 H 0.12 2.20 8.04 -52.48 -0.42 1.78 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -28.20 366.08 -10.32 -38.52 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.57 Total: 9.00 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -4.94 Total: -34.61 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: 0.00 Total: -29.03 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.16 Total: -6.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.20 -10.32 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245352563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.383 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds