Wall clock time and date at job start Sat Apr 11 2020 01:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35609 * 117.00087 * 2 1 4 4 C 1.39149 * 119.87837 * 0.02562 * 3 2 1 5 5 C 1.36416 * 120.43595 * 180.02562 * 4 3 2 6 6 C 1.40909 * 120.18869 * 359.74341 * 5 4 3 7 7 C 1.41245 * 120.11738 * 180.27445 * 6 5 4 8 8 H 1.07997 * 120.00244 * 330.33800 * 7 6 5 9 9 C 1.39864 * 119.99783 * 150.34254 * 7 6 5 10 10 N 1.30894 * 120.00237 * 161.71922 * 9 7 6 11 11 Si 1.86806 * 119.99737 * 341.71371 * 9 7 6 12 12 H 1.48501 * 109.46852 * 95.42060 * 11 9 7 13 13 H 1.48499 * 109.47018 * 215.41513 * 11 9 7 14 14 H 1.48494 * 109.47044 * 335.41761 * 11 9 7 15 15 C 1.40611 * 119.76322 * 0.49377 * 6 5 4 16 16 C 1.38601 * 119.56862 * 359.50533 * 15 6 5 17 17 C 1.48332 * 120.09702 * 180.23486 * 16 15 6 18 18 C 1.39363 * 120.12208 * 129.72744 * 17 16 15 19 19 C 1.38018 * 119.87403 * 179.71849 * 18 17 16 20 20 C 1.38323 * 120.12199 * 0.54075 * 19 18 17 21 21 C 1.50704 * 119.87748 * 179.74023 * 20 19 18 22 22 H 1.08997 * 109.91053 * 158.91751 * 21 20 19 23 23 C 1.53999 * 109.91439 * 280.02084 * 21 20 19 24 24 C 1.54598 * 105.13629 * 120.57470 * 23 21 20 25 25 C 1.54931 * 102.92414 * 21.95705 * 24 23 21 26 26 N 1.47905 * 109.91459 * 37.60506 * 21 20 19 27 27 C 1.38330 * 120.25155 * 359.76170 * 20 19 18 28 28 C 1.38010 * 120.11983 * 359.95313 * 27 20 19 29 29 H 1.08997 * 109.46688 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47074 * 300.00245 * 1 2 3 31 31 H 1.08998 * 109.46779 * 60.00699 * 1 2 3 32 32 H 1.08002 * 119.78432 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.90516 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99855 * 179.97438 * 10 9 7 35 35 H 1.07998 * 120.21615 * 179.79396 * 15 6 5 36 36 H 1.07997 * 120.06463 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.93859 * 180.27602 * 19 18 17 38 38 H 1.09000 * 110.30547 * 239.48933 * 23 21 20 39 39 H 1.08995 * 110.30712 * 1.55951 * 23 21 20 40 40 H 1.09000 * 110.72137 * 140.31401 * 24 23 21 41 41 H 1.09001 * 110.72325 * 263.41831 * 24 23 21 42 42 H 1.08999 * 110.67008 * 81.02106 * 25 24 23 43 43 H 1.09001 * 110.67037 * 203.98318 * 25 24 23 44 44 H 1.00896 * 110.99912 * 335.84058 * 26 21 20 45 45 H 1.07998 * 119.93795 * 179.97438 * 27 20 19 46 46 H 1.08008 * 120.06071 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2843 2.3737 0.0005 5 6 1.8918 3.5951 0.0000 6 6 3.2979 3.6872 0.0044 7 6 3.9253 4.9526 0.0097 8 1 3.4384 5.7987 -0.4523 9 6 5.1772 5.1099 0.6131 10 7 5.9174 6.1498 0.3234 11 14 5.7928 3.8359 1.8328 12 1 6.6591 2.8558 1.1299 13 1 6.5736 4.5100 2.9010 14 1 4.6350 3.1292 2.4371 15 6 4.0742 2.5148 -0.0012 16 6 3.4467 1.2790 -0.0006 17 6 4.2541 0.0347 -0.0012 18 6 3.9894 -0.9713 0.9261 19 6 4.7401 -2.1295 0.9172 20 6 5.7609 -2.2879 -0.0027 21 6 6.5810 -3.5523 -0.0037 22 1 7.0607 -3.6828 -0.9737 23 6 7.6481 -3.4863 1.1047 24 6 7.3514 -4.6940 2.0231 25 6 6.5507 -5.6444 1.0979 26 7 5.7160 -4.7141 0.2955 27 6 6.0322 -1.2900 -0.9214 28 6 5.2841 -0.1303 -0.9254 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 0.2062 2.3108 0.0005 33 1 1.2933 4.4942 0.0009 34 1 6.7855 6.2590 0.7422 35 1 5.1524 2.5768 -0.0013 36 1 3.1956 -0.8467 1.6478 37 1 4.5329 -2.9116 1.6325 38 1 8.6459 -3.5739 0.6748 39 1 7.5575 -2.5540 1.6620 40 1 8.2777 -5.1654 2.3516 41 1 6.7508 -4.3887 2.8799 42 1 7.2230 -6.2110 0.4537 43 1 5.9255 -6.3168 1.6854 44 1 4.8948 -4.4308 0.8088 45 1 6.8307 -1.4189 -1.6371 46 1 5.4965 0.6481 -1.6435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245352563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:00 Heat of formation + Delta-G solvation = -10.619468 kcal Electronic energy + Delta-G solvation = -26770.148864 eV Core-core repulsion = 23202.310039 eV Total energy + Delta-G solvation = -3567.838825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20202 -40.44563 -38.71980 -38.14081 -35.32501 -33.85936 -32.01523 -31.68376 -31.09269 -30.78562 -28.41460 -28.03739 -26.32658 -24.44712 -23.63860 -22.92399 -22.13327 -21.73600 -20.91145 -19.36275 -18.88272 -18.04022 -17.18701 -16.86142 -16.51527 -16.41476 -16.31122 -15.82287 -15.63907 -15.20033 -14.93491 -14.74219 -14.66849 -14.39627 -14.23161 -14.19284 -13.81135 -13.62841 -13.59525 -13.00066 -12.79137 -12.72579 -12.56549 -12.45695 -12.23681 -12.13784 -12.05349 -11.87233 -11.75286 -11.67714 -11.49595 -11.28869 -10.97490 -10.08690 -9.85538 -9.62100 -9.27985 -8.89715 -8.78908 -6.40605 0.08540 0.49611 0.75587 0.86635 1.22748 1.32899 1.42387 2.08041 2.51253 2.69034 2.83895 3.36309 3.42882 3.59242 3.79865 3.85730 4.02100 4.02878 4.08583 4.14251 4.21432 4.37550 4.48982 4.50027 4.51811 4.55502 4.59681 4.66974 4.71731 4.78622 4.85093 4.88884 4.96659 5.01027 5.03486 5.08684 5.12701 5.14433 5.25536 5.30256 5.41274 5.55996 5.59842 5.65140 5.70747 5.85075 5.91382 6.05876 6.07736 6.29979 6.39797 6.56683 6.79150 6.91016 8.19768 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.004045 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.482691 B = 6920.241494 C = 8560.012809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.031 3.969 4 C -0.158 4.158 5 C -0.174 4.174 6 C 0.048 3.952 7 C -0.483 4.483 8 H 0.061 0.939 9 C 0.054 3.946 10 N -0.852 5.852 11 Si 0.950 3.050 12 H -0.265 1.265 13 H -0.275 1.275 14 H -0.257 1.257 15 C -0.200 4.200 16 C -0.057 4.057 17 C -0.045 4.045 18 C -0.098 4.098 19 C -0.114 4.114 20 C -0.090 4.090 21 C 0.120 3.880 22 H 0.094 0.906 23 C -0.145 4.145 24 C -0.153 4.153 25 C 0.041 3.959 26 N -0.680 5.680 27 C -0.114 4.114 28 C -0.125 4.125 29 H 0.116 0.884 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.142 0.858 33 H 0.114 0.886 34 H 0.291 0.709 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.341 0.659 45 H 0.142 0.858 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -21.859 3.365 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.244 6.244 3 C -0.013 4.013 4 C -0.177 4.177 5 C -0.194 4.194 6 C 0.045 3.955 7 C -0.513 4.513 8 H 0.079 0.921 9 C -0.160 4.160 10 N -0.480 5.480 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.202 1.202 14 H -0.181 1.181 15 C -0.219 4.219 16 C -0.058 4.058 17 C -0.045 4.045 18 C -0.116 4.116 19 C -0.133 4.133 20 C -0.091 4.091 21 C 0.010 3.990 22 H 0.111 0.889 23 C -0.184 4.184 24 C -0.192 4.192 25 C -0.088 4.088 26 N -0.310 5.310 27 C -0.132 4.132 28 C -0.143 4.143 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.035 -22.205 2.713 22.370 hybrid contribution 0.150 1.412 1.064 1.774 sum 0.116 -20.793 3.777 21.134 Atomic orbital electron populations 1.23161 0.77956 1.04656 1.01373 1.85906 1.21992 1.26323 1.90182 1.18672 0.90604 0.84520 1.07535 1.20843 0.99871 0.91608 1.05337 1.20914 0.93807 0.97039 1.07616 1.17762 0.92838 0.92446 0.92422 1.19320 1.02068 0.95528 1.34371 0.92056 1.26580 0.95123 0.97158 0.97093 1.69744 1.10839 1.29743 1.37673 0.85704 0.79288 0.78611 0.78922 1.19084 1.20184 1.18081 1.20957 0.97884 0.91430 1.11629 1.18046 0.90339 0.92308 1.05074 1.18905 0.95562 0.93516 0.96542 1.21166 0.99328 0.93112 0.97965 1.20904 0.95802 0.97165 0.99387 1.20133 0.96826 0.96330 0.95815 1.21275 0.91687 0.86136 0.99912 0.88853 1.22874 0.99557 0.99087 0.96854 1.23099 1.01915 0.95902 0.98262 1.23204 0.96084 0.95211 0.94268 1.62952 1.08026 1.13049 1.46957 1.21073 0.99911 0.92853 0.99378 1.21346 0.95731 0.98424 0.98782 0.86572 0.92599 0.92900 0.84024 0.86803 0.89816 0.88260 0.86162 0.84215 0.90036 0.92370 0.89479 0.91556 0.89702 0.89314 0.84033 0.84003 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.80 113.37 1.11 1.67 16 2 O -0.33 -11.41 8.84 -89.20 -0.79 -12.20 16 3 C 0.03 1.27 6.63 23.01 0.15 1.42 16 4 C -0.16 -6.23 8.95 22.06 0.20 -6.04 16 5 C -0.17 -7.94 9.72 22.50 0.22 -7.72 16 6 C 0.05 2.46 5.10 -21.31 -0.11 2.35 16 7 C -0.48 -27.35 9.55 23.40 0.22 -27.12 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 9 C 0.05 2.98 5.40 85.23 0.46 3.44 16 10 N -0.85 -47.72 13.93 21.81 0.30 -47.41 16 11 Si 0.95 44.73 24.52 68.60 1.68 46.42 16 12 H -0.27 -12.16 6.70 99.48 0.67 -11.49 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.26 -12.43 6.87 99.48 0.68 -11.75 16 15 C -0.20 -9.84 6.62 22.94 0.15 -9.69 16 16 C -0.06 -2.53 5.48 -19.98 -0.11 -2.63 16 17 C -0.05 -1.76 5.26 -20.05 -0.11 -1.87 16 18 C -0.10 -3.27 8.78 22.49 0.20 -3.07 16 19 C -0.11 -3.07 8.96 22.24 0.20 -2.87 16 20 C -0.09 -2.34 4.75 -19.82 -0.09 -2.44 16 21 C 0.12 2.43 3.62 44.31 0.16 2.59 16 22 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 23 C -0.14 -2.55 6.56 31.48 0.21 -2.34 16 24 C -0.15 -2.10 7.06 31.80 0.22 -1.88 16 25 C 0.04 0.57 7.55 86.65 0.65 1.22 16 26 N -0.68 -12.72 7.39 -484.02 -3.58 -16.30 16 27 C -0.11 -3.30 9.66 22.24 0.21 -3.09 16 28 C -0.12 -4.48 9.51 22.49 0.21 -4.27 16 29 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.24 7.64 -2.39 -0.02 1.22 16 31 H 0.05 1.20 7.65 -2.39 -0.02 1.19 16 32 H 0.14 4.46 6.26 -2.91 -0.02 4.44 16 33 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 34 H 0.29 14.75 8.30 -92.71 -0.77 13.98 16 35 H 0.10 5.02 4.71 -2.91 -0.01 5.00 16 36 H 0.12 3.97 7.71 -2.91 -0.02 3.95 16 37 H 0.14 2.92 6.55 -2.91 -0.02 2.90 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.21 7.68 -2.39 -0.02 1.19 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.34 6.27 6.18 -89.70 -0.55 5.72 16 45 H 0.14 3.35 8.05 -2.91 -0.02 3.32 16 46 H 0.11 4.19 8.04 -2.91 -0.02 4.16 16 Total: -1.00 -64.03 366.08 2.16 -61.87 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.38 Total: 29.96 kcal Atomic # 6 Polarization: -66.50 SS G_CDS: 4.17 Total: -62.33 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -3.27 Total: -63.71 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.79 Total: -12.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.68 Total: 46.42 kcal Total: -64.03 2.16 -61.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245352563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.246 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds