Wall clock time and date at job start Sat Apr 11 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35596 * 116.99784 * 2 1 4 4 C 1.39146 * 119.88497 * 0.02562 * 3 2 1 5 5 C 1.36418 * 120.43952 * 179.97438 * 4 3 2 6 6 C 1.40904 * 120.18840 * 359.97438 * 5 4 3 7 7 C 1.41246 * 120.12236 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00497 * 150.12220 * 7 6 5 9 9 C 1.39867 * 119.99297 * 330.11709 * 7 6 5 10 10 N 1.30896 * 119.99224 * 161.71998 * 9 7 6 11 11 Si 1.86794 * 120.00470 * 341.71589 * 9 7 6 12 12 H 1.48503 * 109.47316 * 95.41588 * 11 9 7 13 13 H 1.48495 * 109.47339 * 215.41995 * 11 9 7 14 14 H 1.48502 * 109.46960 * 335.41954 * 11 9 7 15 15 C 1.40621 * 119.76161 * 359.77178 * 6 5 4 16 16 C 1.38591 * 119.57168 * 0.48399 * 15 6 5 17 17 C 1.48338 * 120.09866 * 179.77150 * 16 15 6 18 18 C 1.39364 * 120.11778 * 309.72017 * 17 16 15 19 19 C 1.38018 * 119.86771 * 179.97438 * 18 17 16 20 20 C 1.38328 * 120.12689 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.87430 * 179.97438 * 20 19 18 22 22 H 1.08997 * 110.36783 * 20.69642 * 21 20 19 23 23 C 1.54381 * 110.40670 * 258.34724 * 21 20 19 24 24 C 1.54260 * 105.06089 * 217.24643 * 23 21 20 25 25 C 1.54380 * 105.05829 * 0.02562 * 24 23 21 26 26 N 1.48560 * 110.41056 * 143.05166 * 21 20 19 27 27 C 1.38328 * 120.24841 * 0.25236 * 20 19 18 28 28 C 1.38019 * 120.12006 * 359.48975 * 27 20 19 29 29 H 1.09005 * 109.47154 * 60.00163 * 1 2 3 30 30 H 1.09002 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47131 * 299.99771 * 1 2 3 32 32 H 1.08000 * 119.78489 * 359.97415 * 4 3 2 33 33 H 1.08000 * 119.90369 * 180.02562 * 5 4 3 34 34 H 0.97009 * 119.98922 * 180.02562 * 10 9 7 35 35 H 1.08004 * 120.21288 * 180.27691 * 15 6 5 36 36 H 1.07991 * 120.06871 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.93461 * 180.02562 * 19 18 17 38 38 H 1.08992 * 110.33049 * 336.14904 * 23 21 20 39 39 H 1.09011 * 110.32289 * 98.36029 * 23 21 20 40 40 H 1.09004 * 110.31996 * 118.89369 * 24 23 21 41 41 H 1.08987 * 110.33116 * 241.00491 * 24 23 21 42 42 H 1.08999 * 110.41482 * 142.62886 * 25 24 23 43 43 H 1.09001 * 110.41156 * 265.06716 * 25 24 23 44 44 H 1.00897 * 110.99599 * 277.92963 * 26 21 20 45 45 H 1.07992 * 119.93970 * 179.72492 * 27 20 19 46 46 H 1.08004 * 120.05681 * 180.25741 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2843 2.3736 0.0005 5 6 1.8918 3.5951 0.0011 6 6 3.2978 3.6871 0.0016 7 6 3.9254 4.9525 0.0027 8 1 4.8916 5.0758 0.4690 9 6 3.2953 6.0460 -0.6003 10 7 3.6738 7.2638 -0.3052 11 14 1.9138 5.7685 -1.8266 12 1 0.6062 5.8627 -1.1290 13 1 1.9823 6.8011 -2.8915 14 1 2.0546 4.4208 -2.4342 15 6 4.0741 2.5146 0.0065 16 6 3.4467 1.2789 0.0005 17 6 4.2542 0.0345 0.0004 18 6 5.2849 -0.1302 -0.9230 19 6 6.0333 -1.2898 -0.9181 20 6 5.7616 -2.2876 0.0006 21 6 6.5820 -3.5517 0.0005 22 1 7.5360 -3.3848 -0.4996 23 6 5.8068 -4.6964 -0.6867 24 6 6.1567 -5.9610 0.1246 25 6 7.1133 -5.4738 1.2340 26 7 6.8018 -4.0268 1.3908 27 6 4.7360 -2.1318 0.9157 28 6 3.9846 -0.9742 0.9234 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2062 2.3108 0.0005 33 1 1.2933 4.4941 0.0019 34 1 3.2364 8.0221 -0.7232 35 1 5.1524 2.5767 0.0115 36 1 5.4981 0.6483 -1.6404 37 1 6.8326 -1.4184 -1.6330 38 1 4.7346 -4.5053 -0.6462 39 1 6.1337 -4.8077 -1.7207 40 1 5.2561 -6.3904 0.5634 41 1 6.6535 -6.6935 -0.5114 42 1 6.9194 -6.0073 2.1645 43 1 8.1507 -5.6075 0.9273 44 1 7.5685 -3.5344 1.8241 45 1 4.5254 -2.9159 1.6278 46 1 3.1868 -0.8519 1.6411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245352564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:05 Heat of formation + Delta-G solvation = 3.957862 kcal Electronic energy + Delta-G solvation = -26341.251681 eV Core-core repulsion = 22774.044977 eV Total energy + Delta-G solvation = -3567.206705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.70366 -38.97520 -37.56688 -36.49118 -33.52773 -32.35565 -30.57972 -30.38239 -29.84181 -29.70713 -27.19657 -26.82308 -24.45916 -23.11849 -22.19884 -21.34372 -20.83165 -20.32352 -19.84308 -17.50565 -17.25663 -16.86534 -16.30942 -15.66256 -15.04682 -14.95547 -14.88540 -14.54172 -14.20962 -13.56403 -13.51913 -13.23847 -13.07684 -12.90553 -12.85445 -12.73687 -12.45917 -12.40057 -12.19679 -12.01473 -11.51464 -11.48070 -11.21388 -11.15839 -11.04527 -10.82010 -10.62592 -10.58302 -10.35097 -10.07443 -9.93092 -9.56022 -9.10896 -8.79852 -8.47423 -8.43602 -7.63602 -7.08378 -6.92202 -4.39691 1.57482 1.89735 2.52453 2.61732 3.08609 3.19612 3.30306 3.97158 3.99136 4.14523 4.22445 4.46293 4.57481 4.59793 4.83776 5.01402 5.13850 5.27486 5.33834 5.38641 5.40337 5.50839 5.52351 5.56846 5.60068 5.64439 5.68217 5.75749 5.85478 5.89743 5.95341 6.02182 6.07151 6.16166 6.39084 6.48992 6.54099 6.59624 6.72698 6.79873 6.90070 6.97185 7.12097 7.13132 7.18406 7.35467 7.45225 7.52930 7.75706 7.89427 8.27084 8.38033 8.65007 8.81004 10.11074 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002957 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.373416 B = 9467.332174 C =10306.453851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.013 3.987 4 C -0.155 4.155 5 C -0.200 4.200 6 C 0.071 3.929 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.084 3.916 10 N -0.813 5.813 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.245 1.245 15 C -0.160 4.160 16 C -0.047 4.047 17 C -0.009 4.009 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.096 4.096 21 C 0.111 3.889 22 H 0.053 0.947 23 C -0.117 4.117 24 C -0.125 4.125 25 C 0.035 3.965 26 N -0.659 5.659 27 C -0.092 4.092 28 C -0.100 4.100 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.284 0.716 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.339 0.661 45 H 0.124 0.876 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -20.011 -0.549 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.236 6.236 3 C -0.031 4.031 4 C -0.173 4.173 5 C -0.219 4.219 6 C 0.068 3.932 7 C -0.478 4.478 8 H 0.109 0.891 9 C -0.134 4.134 10 N -0.438 5.438 11 Si 0.733 3.267 12 H -0.198 1.198 13 H -0.218 1.218 14 H -0.168 1.168 15 C -0.180 4.180 16 C -0.048 4.048 17 C -0.009 4.009 18 C -0.132 4.132 19 C -0.138 4.138 20 C -0.096 4.096 21 C 0.002 3.998 22 H 0.071 0.929 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.094 4.094 26 N -0.287 5.287 27 C -0.111 4.111 28 C -0.118 4.118 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.154 0.846 45 H 0.142 0.858 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.558 -19.971 -0.335 20.034 hybrid contribution -0.018 0.462 -0.922 1.031 sum 1.540 -19.509 -1.256 19.610 Atomic orbital electron populations 1.22764 0.80882 1.02001 1.00419 1.85890 1.19079 1.27835 1.90793 1.18459 0.90722 0.83198 1.10743 1.20438 0.97877 0.92691 1.06342 1.20692 0.95087 0.95679 1.10464 1.17625 0.91008 0.93328 0.91214 1.19341 1.05868 0.90587 1.32014 0.89145 1.26091 0.96711 0.94297 0.96300 1.69733 1.38657 0.99409 1.35977 0.86387 0.80431 0.79692 0.80158 1.19811 1.21795 1.16812 1.20983 0.98297 0.90017 1.08678 1.17837 0.89032 0.92126 1.05780 1.18862 0.94108 0.93445 0.94456 1.21188 0.95682 0.97384 0.98994 1.20799 1.00140 0.93816 0.99058 1.19470 0.97810 0.94672 0.97655 1.21276 0.96541 0.92759 0.89257 0.92928 1.22361 1.01466 0.93209 0.98458 1.22301 0.99695 0.97486 0.96828 1.22936 0.97174 0.90092 0.99244 1.63667 1.45185 1.02710 1.17176 1.20827 0.94743 0.97266 0.98216 1.21217 0.99045 0.92988 0.98537 0.93890 0.89785 0.93766 0.87923 0.87870 0.90599 0.87081 0.86058 0.86941 0.90533 0.91398 0.91060 0.91569 0.90219 0.94364 0.84553 0.85826 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 9.80 101.05 0.99 1.50 16 2 O -0.32 -6.09 8.81 -18.49 -0.16 -6.25 16 3 C 0.01 0.27 6.63 -38.44 -0.25 0.01 16 4 C -0.15 -3.35 8.95 -39.90 -0.36 -3.70 16 5 C -0.20 -4.78 7.10 -39.23 -0.28 -5.06 16 6 C 0.07 1.78 5.10 -106.85 -0.54 1.24 16 7 C -0.45 -12.06 9.55 -37.83 -0.36 -12.42 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.08 2.19 5.40 -17.34 -0.09 2.10 16 10 N -0.81 -21.71 13.93 55.54 0.77 -20.94 16 11 Si 0.91 20.72 24.51 -169.99 -4.17 16.55 16 12 H -0.27 -6.01 6.70 56.52 0.38 -5.63 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.24 -5.74 6.87 56.52 0.39 -5.35 16 15 C -0.16 -3.72 9.25 -38.55 -0.36 -4.07 16 16 C -0.05 -1.02 5.48 -104.80 -0.57 -1.59 16 17 C -0.01 -0.16 5.27 -104.90 -0.55 -0.72 16 18 C -0.11 -1.95 9.51 -39.24 -0.37 -2.33 16 19 C -0.12 -1.73 9.67 -39.63 -0.38 -2.12 16 20 C -0.10 -1.31 4.92 -104.56 -0.51 -1.83 16 21 C 0.11 1.21 3.35 -67.22 -0.23 0.99 16 22 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 23 C -0.12 -1.15 6.53 -25.35 -0.17 -1.31 16 24 C -0.13 -1.01 7.00 -25.35 -0.18 -1.19 16 25 C 0.03 0.28 7.48 -2.03 -0.02 0.27 16 26 N -0.66 -6.68 6.49 -103.74 -0.67 -7.35 16 27 C -0.09 -1.39 9.25 -39.63 -0.37 -1.75 16 28 C -0.10 -1.73 8.78 -39.25 -0.34 -2.08 16 29 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 32 H 0.10 1.93 6.26 -52.49 -0.33 1.60 16 33 H 0.10 2.46 4.72 -52.49 -0.25 2.21 16 34 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 35 H 0.11 2.46 8.04 -52.48 -0.42 2.03 16 36 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 37 H 0.11 1.36 8.05 -52.48 -0.42 0.94 16 38 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.44 8.14 -51.94 -0.42 0.02 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.34 3.14 8.93 -39.29 -0.35 2.79 16 45 H 0.12 1.74 7.66 -52.49 -0.40 1.34 16 46 H 0.12 2.09 7.68 -52.48 -0.40 1.69 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -28.35 369.14 -10.36 -38.71 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.74 Total: 7.77 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -4.95 Total: -34.06 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.10 Total: -28.29 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.16 Total: -6.25 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.17 Total: 16.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.35 -10.36 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245352564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.670 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds