Wall clock time and date at job start Sat Apr 11 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35596 * 116.99784 * 2 1 4 4 C 1.39146 * 119.88497 * 0.02562 * 3 2 1 5 5 C 1.36418 * 120.43952 * 179.97438 * 4 3 2 6 6 C 1.40904 * 120.18840 * 359.97438 * 5 4 3 7 7 C 1.41246 * 120.12236 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00497 * 150.12220 * 7 6 5 9 9 C 1.39867 * 119.99297 * 330.11709 * 7 6 5 10 10 N 1.30896 * 119.99224 * 161.71998 * 9 7 6 11 11 Si 1.86794 * 120.00470 * 341.71589 * 9 7 6 12 12 H 1.48503 * 109.47316 * 95.41588 * 11 9 7 13 13 H 1.48495 * 109.47339 * 215.41995 * 11 9 7 14 14 H 1.48502 * 109.46960 * 335.41954 * 11 9 7 15 15 C 1.40621 * 119.76161 * 359.77178 * 6 5 4 16 16 C 1.38591 * 119.57168 * 0.48399 * 15 6 5 17 17 C 1.48338 * 120.09866 * 179.77150 * 16 15 6 18 18 C 1.39364 * 120.11778 * 309.72017 * 17 16 15 19 19 C 1.38018 * 119.86771 * 179.97438 * 18 17 16 20 20 C 1.38328 * 120.12689 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.87430 * 179.97438 * 20 19 18 22 22 H 1.08997 * 110.36783 * 20.69642 * 21 20 19 23 23 C 1.54381 * 110.40670 * 258.34724 * 21 20 19 24 24 C 1.54260 * 105.06089 * 217.24643 * 23 21 20 25 25 C 1.54380 * 105.05829 * 0.02562 * 24 23 21 26 26 N 1.48560 * 110.41056 * 143.05166 * 21 20 19 27 27 C 1.38328 * 120.24841 * 0.25236 * 20 19 18 28 28 C 1.38019 * 120.12006 * 359.48975 * 27 20 19 29 29 H 1.09005 * 109.47154 * 60.00163 * 1 2 3 30 30 H 1.09002 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47131 * 299.99771 * 1 2 3 32 32 H 1.08000 * 119.78489 * 359.97415 * 4 3 2 33 33 H 1.08000 * 119.90369 * 180.02562 * 5 4 3 34 34 H 0.97009 * 119.98922 * 180.02562 * 10 9 7 35 35 H 1.08004 * 120.21288 * 180.27691 * 15 6 5 36 36 H 1.07991 * 120.06871 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.93461 * 180.02562 * 19 18 17 38 38 H 1.08992 * 110.33049 * 336.14904 * 23 21 20 39 39 H 1.09011 * 110.32289 * 98.36029 * 23 21 20 40 40 H 1.09004 * 110.31996 * 118.89369 * 24 23 21 41 41 H 1.08987 * 110.33116 * 241.00491 * 24 23 21 42 42 H 1.08999 * 110.41482 * 142.62886 * 25 24 23 43 43 H 1.09001 * 110.41156 * 265.06716 * 25 24 23 44 44 H 1.00897 * 110.99599 * 277.92963 * 26 21 20 45 45 H 1.07992 * 119.93970 * 179.72492 * 27 20 19 46 46 H 1.08004 * 120.05681 * 180.25741 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2843 2.3736 0.0005 5 6 1.8918 3.5951 0.0011 6 6 3.2978 3.6871 0.0016 7 6 3.9254 4.9525 0.0027 8 1 4.8916 5.0758 0.4690 9 6 3.2953 6.0460 -0.6003 10 7 3.6738 7.2638 -0.3052 11 14 1.9138 5.7685 -1.8266 12 1 0.6062 5.8627 -1.1290 13 1 1.9823 6.8011 -2.8915 14 1 2.0546 4.4208 -2.4342 15 6 4.0741 2.5146 0.0065 16 6 3.4467 1.2789 0.0005 17 6 4.2542 0.0345 0.0004 18 6 5.2849 -0.1302 -0.9230 19 6 6.0333 -1.2898 -0.9181 20 6 5.7616 -2.2876 0.0006 21 6 6.5820 -3.5517 0.0005 22 1 7.5360 -3.3848 -0.4996 23 6 5.8068 -4.6964 -0.6867 24 6 6.1567 -5.9610 0.1246 25 6 7.1133 -5.4738 1.2340 26 7 6.8018 -4.0268 1.3908 27 6 4.7360 -2.1318 0.9157 28 6 3.9846 -0.9742 0.9234 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2062 2.3108 0.0005 33 1 1.2933 4.4941 0.0019 34 1 3.2364 8.0221 -0.7232 35 1 5.1524 2.5767 0.0115 36 1 5.4981 0.6483 -1.6404 37 1 6.8326 -1.4184 -1.6330 38 1 4.7346 -4.5053 -0.6462 39 1 6.1337 -4.8077 -1.7207 40 1 5.2561 -6.3904 0.5634 41 1 6.6535 -6.6935 -0.5114 42 1 6.9194 -6.0073 2.1645 43 1 8.1507 -5.6075 0.9273 44 1 7.5685 -3.5344 1.8241 45 1 4.5254 -2.9159 1.6278 46 1 3.1868 -0.8519 1.6411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245352564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:04 Heat of formation + Delta-G solvation = -11.395314 kcal Electronic energy + Delta-G solvation = -26341.917445 eV Core-core repulsion = 22774.044977 eV Total energy + Delta-G solvation = -3567.872468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.06499 -40.24036 -38.64115 -38.14282 -35.34905 -33.78949 -31.83996 -31.58013 -31.18583 -30.98719 -28.42984 -28.09402 -26.21654 -24.42124 -23.50557 -22.53363 -22.02790 -21.72619 -20.94715 -19.30654 -18.86483 -17.67119 -17.38788 -17.27174 -16.62143 -16.40461 -16.29009 -15.73522 -15.34368 -15.16263 -14.91259 -14.63732 -14.41604 -14.20694 -14.11149 -13.99729 -13.74211 -13.63306 -13.51522 -12.98545 -12.82900 -12.78880 -12.64402 -12.50257 -12.20937 -12.13694 -11.98620 -11.90379 -11.72282 -11.61576 -11.38130 -11.29577 -10.92726 -9.96733 -9.72039 -9.51673 -9.30896 -8.87039 -8.74775 -6.39602 0.16820 0.63151 0.73365 0.94639 1.24276 1.38079 1.47519 2.11678 2.53487 2.70608 2.93724 3.31665 3.43795 3.76749 3.85480 3.89784 4.07112 4.13844 4.19315 4.24774 4.29572 4.36215 4.40359 4.47686 4.51217 4.64338 4.70676 4.74822 4.75546 4.80240 4.86690 4.93445 4.98658 5.05423 5.10185 5.12984 5.22039 5.27284 5.28219 5.28532 5.50186 5.58577 5.63918 5.66235 5.84547 5.89260 5.96088 6.09913 6.20919 6.30515 6.42203 6.58141 6.80089 6.90722 8.22371 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002957 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.373416 B = 9467.332174 C =10306.453851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.029 3.971 4 C -0.160 4.160 5 C -0.209 4.209 6 C 0.050 3.950 7 C -0.484 4.484 8 H 0.055 0.945 9 C 0.048 3.952 10 N -0.855 5.855 11 Si 0.960 3.040 12 H -0.256 1.256 13 H -0.277 1.277 14 H -0.256 1.256 15 C -0.169 4.169 16 C -0.052 4.052 17 C -0.041 4.041 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.082 4.082 21 C 0.111 3.889 22 H 0.066 0.934 23 C -0.117 4.117 24 C -0.122 4.122 25 C 0.036 3.964 26 N -0.672 5.672 27 C -0.090 4.090 28 C -0.106 4.106 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.292 0.708 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.343 0.657 45 H 0.135 0.865 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -23.829 -1.285 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.242 6.242 3 C -0.015 4.015 4 C -0.178 4.178 5 C -0.228 4.228 6 C 0.048 3.952 7 C -0.514 4.514 8 H 0.073 0.927 9 C -0.166 4.166 10 N -0.482 5.482 11 Si 0.784 3.216 12 H -0.182 1.182 13 H -0.204 1.204 14 H -0.179 1.179 15 C -0.188 4.188 16 C -0.053 4.053 17 C -0.041 4.041 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.083 4.083 21 C 0.002 3.998 22 H 0.084 0.916 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.093 4.093 26 N -0.302 5.302 27 C -0.108 4.108 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.701 -23.805 -1.059 23.839 hybrid contribution 0.259 1.280 -0.616 1.444 sum 0.960 -22.525 -1.675 22.607 Atomic orbital electron populations 1.23157 0.78154 1.04648 1.01240 1.85907 1.21825 1.26302 1.90214 1.18671 0.90903 0.84175 1.07794 1.20748 0.99695 0.91784 1.05605 1.20778 0.94451 0.96769 1.10839 1.17730 0.92061 0.93093 0.92296 1.19296 1.05335 0.92389 1.34417 0.92663 1.26734 0.98759 0.93789 0.97296 1.69763 1.40625 1.00144 1.37695 0.85564 0.78522 0.79110 0.78403 1.18151 1.20388 1.17941 1.21055 0.98312 0.90518 1.08943 1.18132 0.89990 0.92689 1.04448 1.18822 0.95505 0.93118 0.96619 1.21265 0.95765 0.98471 0.98809 1.21078 1.00094 0.92740 0.99517 1.19840 0.96944 0.95476 0.95993 1.21300 0.96703 0.91599 0.90244 0.91566 1.22359 1.00275 0.93513 0.99395 1.22312 0.99865 0.97016 0.96808 1.22995 0.97934 0.88683 0.99677 1.63625 1.45903 1.04013 1.16637 1.20938 0.94638 0.96564 0.98641 1.21188 0.99493 0.93496 0.98236 0.93096 0.86434 0.92759 0.84626 0.87890 0.89774 0.87412 0.86610 0.84106 0.92143 0.90180 0.91202 0.89798 0.89601 0.93040 0.84111 0.84700 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.80 113.37 1.11 1.69 16 2 O -0.33 -11.71 8.81 -89.06 -0.78 -12.50 16 3 C 0.03 1.21 6.63 23.01 0.15 1.36 16 4 C -0.16 -6.70 8.95 22.06 0.20 -6.50 16 5 C -0.21 -10.05 7.10 22.50 0.16 -9.89 16 6 C 0.05 2.64 5.10 -21.31 -0.11 2.54 16 7 C -0.48 -27.75 9.55 23.40 0.22 -27.53 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 9 C 0.05 2.60 5.40 85.23 0.46 3.06 16 10 N -0.85 -47.81 13.93 21.82 0.30 -47.51 16 11 Si 0.96 43.35 24.51 68.60 1.68 45.03 16 12 H -0.26 -10.81 6.70 99.48 0.67 -10.14 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.26 -11.84 6.87 99.48 0.68 -11.16 16 15 C -0.17 -8.17 9.25 22.94 0.21 -7.96 16 16 C -0.05 -2.27 5.48 -19.98 -0.11 -2.38 16 17 C -0.04 -1.54 5.27 -20.05 -0.11 -1.64 16 18 C -0.12 -4.22 9.51 22.49 0.21 -4.01 16 19 C -0.12 -3.13 9.67 22.24 0.21 -2.91 16 20 C -0.08 -2.06 4.92 -19.82 -0.10 -2.16 16 21 C 0.11 2.07 3.35 44.32 0.15 2.22 16 22 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 23 C -0.12 -1.93 6.53 31.49 0.21 -1.72 16 24 C -0.12 -1.56 7.00 31.49 0.22 -1.34 16 25 C 0.04 0.46 7.48 86.40 0.65 1.11 16 26 N -0.67 -11.67 6.49 -482.12 -3.13 -14.80 16 27 C -0.09 -2.54 9.25 22.24 0.21 -2.33 16 28 C -0.11 -3.60 8.78 22.49 0.20 -3.40 16 29 H 0.05 1.25 7.65 -2.38 -0.02 1.23 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.30 7.65 -2.39 -0.02 1.28 16 32 H 0.14 4.70 6.26 -2.91 -0.02 4.68 16 33 H 0.10 4.89 4.72 -2.91 -0.01 4.87 16 34 H 0.29 14.66 8.30 -92.70 -0.77 13.90 16 35 H 0.11 5.11 8.04 -2.91 -0.02 5.09 16 36 H 0.12 3.94 8.04 -2.92 -0.02 3.92 16 37 H 0.14 2.97 8.05 -2.91 -0.02 2.95 16 38 H 0.06 1.19 7.79 -2.39 -0.02 1.17 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.34 5.45 8.93 -89.70 -0.80 4.64 16 45 H 0.14 3.51 7.66 -2.91 -0.02 3.48 16 46 H 0.11 3.88 7.68 -2.91 -0.02 3.86 16 Total: -1.00 -64.20 369.14 2.35 -61.86 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.13 Total: 29.70 kcal Atomic # 6 Polarization: -65.94 SS G_CDS: 4.15 Total: -61.79 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -2.82 Total: -62.30 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.78 Total: -12.50 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.68 Total: 45.03 kcal Total: -64.20 2.35 -61.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245352564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.461 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds