Wall clock time and date at job start Sat Apr 11 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35867 * 117.00015 * 2 1 4 4 C 1.39461 * 119.78646 * 359.97438 * 3 2 1 5 5 C 1.37948 * 120.62161 * 179.69160 * 4 3 2 6 6 C 1.39164 * 120.16426 * 0.60329 * 5 4 3 7 7 C 1.47838 * 120.21820 * 179.69548 * 6 5 4 8 8 C 1.39667 * 120.15328 * 309.72344 * 7 6 5 9 9 C 1.37916 * 119.84828 * 179.97438 * 8 7 6 10 10 C 1.38390 * 120.15313 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.85067 * 180.02562 * 10 9 8 12 12 H 1.09000 * 110.36446 * 20.69961 * 11 10 9 13 13 C 1.54382 * 110.41365 * 258.35080 * 11 10 9 14 14 C 1.54255 * 105.05977 * 217.24906 * 13 11 10 15 15 C 1.54377 * 105.06180 * 359.97438 * 14 13 11 16 16 N 1.48565 * 110.41611 * 143.04755 * 11 10 9 17 17 C 1.38406 * 120.30438 * 0.29114 * 10 9 8 18 18 C 1.37918 * 120.14807 * 359.45496 * 17 10 9 19 19 C 1.41895 * 119.55950 * 359.42436 * 6 5 4 20 20 C 1.40892 * 120.29699 * 180.25125 * 19 6 5 21 21 H 1.08001 * 120.00745 * 329.33769 * 20 19 6 22 22 C 1.40056 * 119.99964 * 149.34427 * 20 19 6 23 23 N 1.30781 * 120.00120 * 162.48360 * 22 20 19 24 24 Si 1.86802 * 119.99781 * 342.48589 * 22 20 19 25 25 H 1.48499 * 109.47033 * 95.37233 * 24 22 20 26 26 H 1.48504 * 109.46776 * 215.37154 * 24 22 20 27 27 H 1.48505 * 109.46997 * 335.37013 * 24 22 20 28 28 C 1.37935 * 119.77833 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46855 * 59.99045 * 1 2 3 30 30 H 1.08995 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46927 * 299.99683 * 1 2 3 32 32 H 1.08003 * 119.68863 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.92019 * 180.32136 * 5 4 3 34 34 H 1.08007 * 120.07486 * 359.96219 * 8 7 6 35 35 H 1.08002 * 119.92461 * 180.02562 * 9 8 7 36 36 H 1.09009 * 110.31955 * 336.14399 * 13 11 10 37 37 H 1.08995 * 110.32440 * 98.35034 * 13 11 10 38 38 H 1.09005 * 110.32199 * 118.89431 * 14 13 11 39 39 H 1.09002 * 110.32467 * 240.99766 * 14 13 11 40 40 H 1.09007 * 110.41232 * 142.63694 * 15 14 13 41 41 H 1.09002 * 110.41090 * 265.07190 * 15 14 13 42 42 H 1.00899 * 110.99830 * 277.94184 * 16 11 10 43 43 H 1.08004 * 119.92092 * 179.70838 * 17 10 9 44 44 H 1.07998 * 120.07568 * 180.29663 * 18 17 10 45 45 H 0.96999 * 120.00241 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.09374 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2819 2.3774 -0.0005 5 6 1.8902 3.6155 0.0058 6 6 3.2784 3.7126 0.0002 7 6 3.9315 5.0389 0.0003 8 6 3.5452 6.0112 -0.9250 9 6 4.1583 7.2466 -0.9190 10 6 5.1539 7.5240 0.0014 11 6 5.8189 8.8764 0.0022 12 1 5.1870 9.6101 -0.4982 13 6 7.1997 8.7979 -0.6838 14 6 8.1053 9.7462 0.1286 15 6 7.1954 10.3184 1.2367 16 7 6.1129 9.3085 1.3929 17 6 5.5455 6.5633 0.9175 18 6 4.9372 5.3256 0.9261 19 6 4.0629 2.5302 0.0003 20 6 5.4695 2.6104 0.0000 21 1 5.9629 3.4443 -0.4772 22 6 6.2282 1.6087 0.6186 23 7 7.4996 1.4844 0.3385 24 14 5.4240 0.4501 1.8435 25 1 5.0114 -0.7959 1.1489 26 1 6.3913 0.1194 2.9206 27 1 4.2299 1.1060 2.4347 28 6 3.4236 1.2774 0.0005 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2039 2.3110 -0.0014 33 1 1.2876 4.5117 0.0106 34 1 2.7682 5.7960 -1.6436 35 1 3.8602 7.9995 -1.6336 36 1 7.5852 7.7790 -0.6432 37 1 7.1285 9.1357 -1.7176 38 1 8.9354 9.1928 0.5680 39 1 8.4803 10.5485 -0.5069 40 1 7.7518 10.4253 2.1680 41 1 6.7793 11.2778 0.9292 42 1 5.2967 9.7142 1.8257 43 1 6.3264 6.7849 1.6300 44 1 5.2404 4.5785 1.6446 45 1 8.0251 0.7909 0.7671 46 1 4.0098 0.3704 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245359215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:10 Heat of formation + Delta-G solvation = 0.884787 kcal Electronic energy + Delta-G solvation = -26585.570729 eV Core-core repulsion = 23018.230766 eV Total energy + Delta-G solvation = -3567.339963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.42794 -38.93987 -37.68427 -36.21948 -33.58983 -31.86818 -30.69512 -30.27954 -29.99272 -29.21219 -27.47126 -25.96126 -25.03987 -22.77616 -21.85402 -21.36420 -20.82727 -20.19989 -19.43577 -17.80971 -16.70653 -16.59116 -16.30941 -15.49161 -15.20832 -15.06927 -14.71489 -14.48681 -13.93590 -13.67789 -13.30878 -13.19738 -12.94513 -12.69209 -12.60467 -12.50626 -12.39206 -12.21218 -12.08149 -11.81417 -11.47534 -11.30585 -11.22619 -11.07299 -10.88297 -10.68300 -10.54446 -10.34530 -10.27197 -10.04922 -9.85079 -9.65337 -9.14061 -8.61233 -8.15463 -7.98622 -7.72908 -7.00840 -6.90732 -4.54249 1.86166 2.20516 2.57837 2.73844 3.15897 3.22204 3.33724 3.98107 4.05682 4.19322 4.39833 4.52895 4.77886 4.79631 5.01954 5.19906 5.32579 5.38053 5.48849 5.50009 5.56191 5.58786 5.68171 5.74809 5.75140 5.82420 5.85430 5.87923 5.96188 6.04890 6.13442 6.24019 6.29011 6.37326 6.53358 6.63329 6.69683 6.75171 6.85484 6.99704 7.06577 7.12649 7.22551 7.41272 7.41918 7.50768 7.53791 7.68252 7.84567 7.92499 8.21135 8.40125 8.60897 8.73265 9.99169 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.003643 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.210274 B = 7685.052235 C = 9046.184054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.331 6.331 3 C 0.160 3.840 4 C -0.323 4.323 5 C -0.030 4.030 6 C -0.190 4.190 7 C 0.018 3.982 8 C -0.133 4.133 9 C -0.122 4.122 10 C -0.106 4.106 11 C 0.114 3.886 12 H 0.049 0.951 13 C -0.118 4.118 14 C -0.125 4.125 15 C 0.035 3.965 16 N -0.657 5.657 17 C -0.091 4.091 18 C -0.098 4.098 19 C 0.134 3.866 20 C -0.428 4.428 21 H 0.100 0.900 22 C 0.087 3.913 23 N -0.795 5.795 24 Si 0.908 3.092 25 H -0.267 1.267 26 H -0.290 1.290 27 H -0.243 1.243 28 C -0.267 4.267 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.336 0.664 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.287 0.713 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 11.029 0.634 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.245 6.245 3 C 0.116 3.884 4 C -0.343 4.343 5 C -0.048 4.048 6 C -0.191 4.191 7 C 0.018 3.982 8 C -0.151 4.151 9 C -0.140 4.140 10 C -0.106 4.106 11 C 0.005 3.995 12 H 0.067 0.933 13 C -0.156 4.156 14 C -0.163 4.163 15 C -0.094 4.094 16 N -0.286 5.286 17 C -0.109 4.109 18 C -0.116 4.116 19 C 0.130 3.870 20 C -0.455 4.455 21 H 0.118 0.882 22 C -0.134 4.134 23 N -0.418 5.418 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.218 1.218 27 H -0.166 1.166 28 C -0.287 4.287 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.152 0.848 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.098 0.902 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.082 10.185 0.860 10.675 hybrid contribution -0.977 0.289 0.009 1.019 sum -4.058 10.474 0.870 11.266 Atomic orbital electron populations 1.22825 0.80140 1.02240 1.00869 1.86000 1.20112 1.28984 1.89374 1.18856 0.91983 0.82807 0.94756 1.20349 0.97585 0.92238 1.24116 1.20442 0.93329 0.95454 0.95622 1.18551 0.91961 0.91311 1.17273 1.18742 0.94137 0.92168 0.93129 1.21145 1.01127 0.93453 0.99352 1.20677 0.97375 0.96947 0.99013 1.19408 0.98184 0.94745 0.98279 1.21243 0.95469 0.93837 0.88974 0.93307 1.22373 0.93920 1.01042 0.98277 1.22299 0.98447 0.98759 0.96802 1.22936 0.93952 0.93296 0.99231 1.63697 1.11395 1.36056 1.17411 1.20835 0.99453 0.92455 0.98205 1.21431 0.95592 0.95880 0.98695 1.17343 0.93181 0.89067 0.87386 1.19483 0.89398 1.07010 1.29643 0.88205 1.26216 0.94667 0.96090 0.96471 1.69670 1.08214 1.29102 1.34773 0.86345 0.79847 0.80594 0.79813 1.19320 1.21794 1.16622 1.20259 0.90506 0.97857 1.20080 0.93307 0.89612 0.93362 0.88051 0.88329 0.86991 0.87587 0.90287 0.91546 0.91003 0.91714 0.90327 0.94550 0.84820 0.86112 0.85618 0.90231 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.80 101.05 0.99 1.51 16 2 O -0.33 -6.82 10.48 -19.32 -0.20 -7.02 16 3 C 0.16 3.65 6.67 -39.24 -0.26 3.38 16 4 C -0.32 -6.73 9.02 -39.23 -0.35 -7.09 16 5 C -0.03 -0.63 9.49 -39.34 -0.37 -1.01 16 6 C -0.19 -4.34 5.53 -104.23 -0.58 -4.92 16 7 C 0.02 0.39 4.92 -104.90 -0.52 -0.13 16 8 C -0.13 -2.45 9.52 -39.17 -0.37 -2.82 16 9 C -0.12 -1.98 9.66 -39.64 -0.38 -2.36 16 10 C -0.11 -1.70 4.93 -104.50 -0.51 -2.22 16 11 C 0.11 1.49 3.35 -67.22 -0.22 1.26 16 12 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 13 C -0.12 -1.46 6.53 -25.35 -0.17 -1.63 16 14 C -0.12 -1.29 7.00 -25.35 -0.18 -1.47 16 15 C 0.04 0.35 7.48 -2.01 -0.02 0.34 16 16 N -0.66 -7.94 6.49 -103.71 -0.67 -8.61 16 17 C -0.09 -1.65 9.24 -39.64 -0.37 -2.02 16 18 C -0.10 -2.02 8.08 -39.17 -0.32 -2.34 16 19 C 0.13 3.35 5.09 -106.59 -0.54 2.81 16 20 C -0.43 -11.18 7.49 -37.90 -0.28 -11.46 16 21 H 0.10 2.77 7.02 -52.49 -0.37 2.40 16 22 C 0.09 2.22 5.41 -17.32 -0.09 2.12 16 23 N -0.79 -20.65 13.93 55.55 0.77 -19.88 16 24 Si 0.91 20.96 24.52 -169.99 -4.17 16.79 16 25 H -0.27 -6.17 6.72 56.52 0.38 -5.79 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.24 -5.80 6.85 56.52 0.39 -5.41 16 28 C -0.27 -6.64 7.07 -38.78 -0.27 -6.92 16 29 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 32 H 0.10 1.82 6.25 -52.48 -0.33 1.49 16 33 H 0.10 1.82 8.04 -52.49 -0.42 1.39 16 34 H 0.11 1.93 8.05 -52.48 -0.42 1.51 16 35 H 0.11 1.45 8.05 -52.49 -0.42 1.03 16 36 H 0.08 1.14 7.79 -51.92 -0.40 0.74 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.34 3.64 8.93 -39.29 -0.35 3.29 16 43 H 0.12 2.12 7.66 -52.48 -0.40 1.72 16 44 H 0.13 2.76 7.31 -52.49 -0.38 2.37 16 45 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 46 H 0.11 2.77 4.79 -52.49 -0.25 2.52 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -27.93 366.75 -10.24 -38.17 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.67 Total: 9.98 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: -4.82 Total: -34.96 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.10 Total: -28.50 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.20 Total: -7.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.93 -10.24 -38.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245359215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.058 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds