Wall clock time and date at job start Sat Apr 11 2020 01:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35867 * 117.00015 * 2 1 4 4 C 1.39461 * 119.78646 * 359.97438 * 3 2 1 5 5 C 1.37948 * 120.62161 * 179.69160 * 4 3 2 6 6 C 1.39164 * 120.16426 * 0.60329 * 5 4 3 7 7 C 1.47838 * 120.21820 * 179.69548 * 6 5 4 8 8 C 1.39667 * 120.15328 * 309.72344 * 7 6 5 9 9 C 1.37916 * 119.84828 * 179.97438 * 8 7 6 10 10 C 1.38390 * 120.15313 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.85067 * 180.02562 * 10 9 8 12 12 H 1.09000 * 110.36446 * 20.69961 * 11 10 9 13 13 C 1.54382 * 110.41365 * 258.35080 * 11 10 9 14 14 C 1.54255 * 105.05977 * 217.24906 * 13 11 10 15 15 C 1.54377 * 105.06180 * 359.97438 * 14 13 11 16 16 N 1.48565 * 110.41611 * 143.04755 * 11 10 9 17 17 C 1.38406 * 120.30438 * 0.29114 * 10 9 8 18 18 C 1.37918 * 120.14807 * 359.45496 * 17 10 9 19 19 C 1.41895 * 119.55950 * 359.42436 * 6 5 4 20 20 C 1.40892 * 120.29699 * 180.25125 * 19 6 5 21 21 H 1.08001 * 120.00745 * 329.33769 * 20 19 6 22 22 C 1.40056 * 119.99964 * 149.34427 * 20 19 6 23 23 N 1.30781 * 120.00120 * 162.48360 * 22 20 19 24 24 Si 1.86802 * 119.99781 * 342.48589 * 22 20 19 25 25 H 1.48499 * 109.47033 * 95.37233 * 24 22 20 26 26 H 1.48504 * 109.46776 * 215.37154 * 24 22 20 27 27 H 1.48505 * 109.46997 * 335.37013 * 24 22 20 28 28 C 1.37935 * 119.77833 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46855 * 59.99045 * 1 2 3 30 30 H 1.08995 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46927 * 299.99683 * 1 2 3 32 32 H 1.08003 * 119.68863 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.92019 * 180.32136 * 5 4 3 34 34 H 1.08007 * 120.07486 * 359.96219 * 8 7 6 35 35 H 1.08002 * 119.92461 * 180.02562 * 9 8 7 36 36 H 1.09009 * 110.31955 * 336.14399 * 13 11 10 37 37 H 1.08995 * 110.32440 * 98.35034 * 13 11 10 38 38 H 1.09005 * 110.32199 * 118.89431 * 14 13 11 39 39 H 1.09002 * 110.32467 * 240.99766 * 14 13 11 40 40 H 1.09007 * 110.41232 * 142.63694 * 15 14 13 41 41 H 1.09002 * 110.41090 * 265.07190 * 15 14 13 42 42 H 1.00899 * 110.99830 * 277.94184 * 16 11 10 43 43 H 1.08004 * 119.92092 * 179.70838 * 17 10 9 44 44 H 1.07998 * 120.07568 * 180.29663 * 18 17 10 45 45 H 0.96999 * 120.00241 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.09374 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2819 2.3774 -0.0005 5 6 1.8902 3.6155 0.0058 6 6 3.2784 3.7126 0.0002 7 6 3.9315 5.0389 0.0003 8 6 3.5452 6.0112 -0.9250 9 6 4.1583 7.2466 -0.9190 10 6 5.1539 7.5240 0.0014 11 6 5.8189 8.8764 0.0022 12 1 5.1870 9.6101 -0.4982 13 6 7.1997 8.7979 -0.6838 14 6 8.1053 9.7462 0.1286 15 6 7.1954 10.3184 1.2367 16 7 6.1129 9.3085 1.3929 17 6 5.5455 6.5633 0.9175 18 6 4.9372 5.3256 0.9261 19 6 4.0629 2.5302 0.0003 20 6 5.4695 2.6104 0.0000 21 1 5.9629 3.4443 -0.4772 22 6 6.2282 1.6087 0.6186 23 7 7.4996 1.4844 0.3385 24 14 5.4240 0.4501 1.8435 25 1 5.0114 -0.7959 1.1489 26 1 6.3913 0.1194 2.9206 27 1 4.2299 1.1060 2.4347 28 6 3.4236 1.2774 0.0005 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2039 2.3110 -0.0014 33 1 1.2876 4.5117 0.0106 34 1 2.7682 5.7960 -1.6436 35 1 3.8602 7.9995 -1.6336 36 1 7.5852 7.7790 -0.6432 37 1 7.1285 9.1357 -1.7176 38 1 8.9354 9.1928 0.5680 39 1 8.4803 10.5485 -0.5069 40 1 7.7518 10.4253 2.1680 41 1 6.7793 11.2778 0.9292 42 1 5.2967 9.7142 1.8257 43 1 6.3264 6.7849 1.6300 44 1 5.2404 4.5785 1.6446 45 1 8.0251 0.7909 0.7671 46 1 4.0098 0.3704 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245359215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:09 Heat of formation + Delta-G solvation = -14.726799 kcal Electronic energy + Delta-G solvation = -26586.247698 eV Core-core repulsion = 23018.230766 eV Total energy + Delta-G solvation = -3568.016932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.91586 -40.32568 -38.96980 -37.75240 -35.46174 -33.26579 -32.46196 -31.55147 -31.14046 -30.60725 -28.76390 -27.29365 -26.80513 -24.20322 -23.35425 -22.88602 -21.90302 -21.53162 -20.80582 -19.60567 -18.35932 -17.75942 -17.54632 -16.95327 -16.70302 -16.56358 -16.42155 -15.71840 -15.39132 -15.19537 -14.94164 -14.48723 -14.21834 -14.15045 -14.09838 -13.95422 -13.68651 -13.58102 -13.40473 -12.99802 -12.89754 -12.73984 -12.67061 -12.53904 -12.23032 -12.13542 -11.90408 -11.83859 -11.69024 -11.51813 -11.44184 -11.33555 -10.97427 -9.65215 -9.55112 -9.50408 -9.45475 -8.93539 -8.57501 -6.48702 0.31979 0.73994 0.77362 1.04121 1.25078 1.36637 1.43885 2.09251 2.53181 2.62969 2.99621 3.34551 3.50239 3.82169 3.86838 4.12184 4.15170 4.18701 4.26357 4.33301 4.35349 4.42153 4.43167 4.45494 4.50314 4.65890 4.71333 4.75912 4.78880 4.82952 4.86366 4.97307 4.98199 5.05192 5.20588 5.21535 5.25676 5.27257 5.28664 5.39100 5.54608 5.71666 5.73277 5.78568 5.84531 6.01273 6.06569 6.14384 6.25230 6.36700 6.47850 6.62657 6.79704 6.83923 8.12813 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.003643 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.210274 B = 7685.052235 C = 9046.184054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.350 6.350 3 C 0.153 3.847 4 C -0.305 4.305 5 C -0.033 4.033 6 C -0.195 4.195 7 C -0.012 4.012 8 C -0.132 4.132 9 C -0.116 4.116 10 C -0.093 4.093 11 C 0.116 3.884 12 H 0.073 0.927 13 C -0.121 4.121 14 C -0.123 4.123 15 C 0.038 3.962 16 N -0.675 5.675 17 C -0.097 4.097 18 C -0.117 4.117 19 C 0.117 3.883 20 C -0.451 4.451 21 H 0.068 0.932 22 C 0.058 3.942 23 N -0.835 5.835 24 Si 0.956 3.044 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.259 1.259 28 C -0.293 4.293 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.344 0.656 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.294 0.706 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.622 13.423 0.163 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.264 6.264 3 C 0.108 3.892 4 C -0.325 4.325 5 C -0.051 4.051 6 C -0.196 4.196 7 C -0.013 4.013 8 C -0.150 4.150 9 C -0.134 4.134 10 C -0.094 4.094 11 C 0.007 3.993 12 H 0.091 0.909 13 C -0.159 4.159 14 C -0.161 4.161 15 C -0.091 4.091 16 N -0.305 5.305 17 C -0.115 4.115 18 C -0.135 4.135 19 C 0.114 3.886 20 C -0.479 4.479 21 H 0.086 0.914 22 C -0.159 4.159 23 N -0.461 5.461 24 Si 0.781 3.219 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.183 1.183 28 C -0.313 4.313 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.137 0.863 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.823 12.576 0.397 13.864 hybrid contribution -0.358 -0.344 0.108 0.508 sum -6.181 12.232 0.505 13.714 Atomic orbital electron populations 1.23256 0.76858 1.04977 1.02079 1.85977 1.23457 1.27957 1.89009 1.18952 0.91562 0.84437 0.94210 1.20808 0.99441 0.91280 1.20938 1.20830 0.92717 0.96972 0.94566 1.18909 0.93089 0.91566 1.16077 1.18790 0.95291 0.92347 0.94823 1.21331 1.01465 0.93579 0.98674 1.21062 0.96392 0.96834 0.99116 1.19799 0.97281 0.95759 0.96565 1.21256 0.95765 0.92278 0.90019 0.90910 1.22373 0.93959 0.99928 0.99641 1.22313 0.97894 0.98863 0.97016 1.22982 0.93168 0.93505 0.99400 1.63631 1.12370 1.37540 1.16952 1.20847 0.99357 0.92171 0.99112 1.21288 0.96733 0.96429 0.99094 1.17521 0.92985 0.90314 0.87807 1.19284 0.90257 1.06760 1.31645 0.91434 1.26669 0.94956 0.96969 0.97301 1.69687 1.09041 1.30692 1.36640 0.85623 0.78736 0.78962 0.78620 1.19476 1.20110 1.18286 1.20304 0.92006 0.97204 1.21767 0.91881 0.86418 0.92127 0.84233 0.85033 0.85509 0.83782 0.93398 0.89919 0.91954 0.89417 0.89820 0.92424 0.83965 0.86303 0.88635 0.89526 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.80 113.37 1.11 1.70 16 2 O -0.35 -13.84 10.48 -92.06 -0.97 -14.81 16 3 C 0.15 6.85 6.67 22.49 0.15 7.00 16 4 C -0.31 -11.92 9.02 22.50 0.20 -11.71 16 5 C -0.03 -1.32 9.49 22.42 0.21 -1.10 16 6 C -0.20 -9.09 5.53 -19.61 -0.11 -9.19 16 7 C -0.01 -0.53 4.92 -20.05 -0.10 -0.63 16 8 C -0.13 -4.72 9.52 22.54 0.21 -4.50 16 9 C -0.12 -3.49 9.66 22.23 0.21 -3.28 16 10 C -0.09 -2.90 4.93 -19.79 -0.10 -2.99 16 11 C 0.12 2.74 3.35 44.32 0.15 2.89 16 12 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 13 C -0.12 -2.79 6.53 31.49 0.21 -2.58 16 14 C -0.12 -2.28 7.00 31.49 0.22 -2.06 16 15 C 0.04 0.66 7.48 86.39 0.65 1.30 16 16 N -0.68 -14.95 6.49 -482.01 -3.13 -18.08 16 17 C -0.10 -3.61 9.24 22.23 0.21 -3.40 16 18 C -0.12 -5.13 8.08 22.54 0.18 -4.95 16 19 C 0.12 6.12 5.09 -21.14 -0.11 6.02 16 20 C -0.45 -25.38 7.49 23.36 0.18 -25.21 16 21 H 0.07 4.12 7.02 -2.91 -0.02 4.10 16 22 C 0.06 3.15 5.41 85.29 0.46 3.61 16 23 N -0.84 -46.32 13.93 21.85 0.30 -46.02 16 24 Si 0.96 45.60 24.52 68.60 1.68 47.28 16 25 H -0.27 -12.70 6.72 99.48 0.67 -12.03 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.26 -12.81 6.85 99.48 0.68 -12.13 16 28 C -0.29 -14.98 7.07 22.79 0.16 -14.82 16 29 H 0.06 1.47 7.64 -2.38 -0.02 1.45 16 30 H 0.12 2.30 8.14 -2.39 -0.02 2.29 16 31 H 0.06 1.44 7.65 -2.39 -0.02 1.42 16 32 H 0.14 4.34 6.25 -2.91 -0.02 4.32 16 33 H 0.13 4.38 8.04 -2.91 -0.02 4.36 16 34 H 0.13 4.07 8.05 -2.91 -0.02 4.05 16 35 H 0.14 3.28 8.05 -2.91 -0.02 3.25 16 36 H 0.05 1.39 7.79 -2.38 -0.02 1.38 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.34 6.62 8.93 -89.69 -0.80 5.82 16 43 H 0.12 4.38 7.66 -2.91 -0.02 4.36 16 44 H 0.10 4.64 7.31 -2.91 -0.02 4.62 16 45 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 46 H 0.09 5.00 4.79 -2.91 -0.01 4.98 16 Total: -1.00 -65.32 366.75 2.13 -63.19 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.13 Total: 32.34 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 4.10 Total: -63.92 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -2.82 Total: -64.09 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.97 Total: -14.81 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.68 Total: 47.28 kcal Total: -65.32 2.13 -63.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245359215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.468 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds