Wall clock time and date at job start Sat Apr 11 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35876 * 117.00068 * 2 1 4 4 C 1.39471 * 119.77983 * 0.02562 * 3 2 1 5 5 C 1.37946 * 120.61929 * 179.97438 * 4 3 2 6 6 C 1.39171 * 120.16218 * 359.74527 * 5 4 3 7 7 C 1.47843 * 120.21784 * 180.27556 * 6 5 4 8 8 C 1.39666 * 120.14949 * 129.93660 * 7 6 5 9 9 C 1.37918 * 119.84187 * 179.76934 * 8 7 6 10 10 C 1.38398 * 120.15596 * 0.50854 * 9 8 7 11 11 C 1.50696 * 119.84968 * 179.72184 * 10 9 8 12 12 H 1.09005 * 109.90939 * 158.91412 * 11 10 9 13 13 C 1.53990 * 109.91768 * 280.02299 * 11 10 9 14 14 C 1.54592 * 105.14295 * 120.57834 * 13 11 10 15 15 C 1.54938 * 102.92016 * 21.95836 * 14 13 11 16 16 N 1.47901 * 109.91708 * 37.61236 * 11 10 9 17 17 C 1.38405 * 120.30218 * 359.74195 * 10 9 8 18 18 C 1.37913 * 120.15042 * 0.02562 * 17 10 9 19 19 C 1.41893 * 119.56229 * 0.48555 * 6 5 4 20 20 C 1.40898 * 120.29933 * 179.78801 * 19 6 5 21 21 H 1.07999 * 120.00326 * 333.81082 * 20 19 6 22 22 C 1.40049 * 119.99844 * 153.80412 * 20 19 6 23 23 N 1.30784 * 119.99687 * 344.75133 * 22 20 19 24 24 Si 1.86797 * 120.00019 * 165.02471 * 22 20 19 25 25 H 1.48503 * 109.47176 * 269.72627 * 24 22 20 26 26 H 1.48505 * 109.46979 * 29.72466 * 24 22 20 27 27 H 1.48499 * 109.46978 * 149.72392 * 24 22 20 28 28 C 1.37930 * 119.78132 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46824 * 300.00033 * 1 2 3 30 30 H 1.08999 * 109.47416 * 59.99439 * 1 2 3 31 31 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.68912 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.91876 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.07563 * 0.02562 * 8 7 6 35 35 H 1.08005 * 119.92039 * 180.27517 * 9 8 7 36 36 H 1.09000 * 110.30957 * 239.49339 * 13 11 10 37 37 H 1.08995 * 110.31130 * 1.55701 * 13 11 10 38 38 H 1.09000 * 110.72700 * 140.31107 * 14 13 11 39 39 H 1.08994 * 110.72606 * 263.41847 * 14 13 11 40 40 H 1.08996 * 110.67223 * 81.02467 * 15 14 13 41 41 H 1.09007 * 110.66557 * 203.98822 * 15 14 13 42 42 H 1.00897 * 110.99972 * 335.82769 * 16 11 10 43 43 H 1.07999 * 119.91876 * 180.02562 * 17 10 9 44 44 H 1.08003 * 120.07663 * 179.97438 * 18 17 10 45 45 H 0.97002 * 119.99448 * 180.02562 * 23 22 20 46 46 H 1.07994 * 120.09298 * 359.96965 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2818 2.3774 0.0005 5 6 1.8900 3.6156 0.0011 6 6 3.2783 3.7127 0.0064 7 6 3.9314 5.0390 0.0132 8 6 4.9334 5.3228 0.9438 9 6 5.5418 6.5606 0.9413 10 6 5.1541 7.5239 0.0264 11 6 5.8191 8.8762 0.0339 12 1 5.6856 9.3609 -0.9333 13 6 5.2150 9.7517 1.1474 14 6 6.4035 10.1108 2.0684 15 6 7.6304 9.9163 1.1424 16 7 7.2600 8.7275 0.3326 17 6 4.1582 7.2512 -0.8952 18 6 3.5448 6.0160 -0.9070 19 6 4.0628 2.5304 0.0009 20 6 5.4695 2.6106 0.0017 21 1 5.9610 3.4813 -0.4067 22 6 6.2304 1.5613 0.5322 23 7 5.6611 0.6569 1.2861 24 14 8.0598 1.4579 0.1693 25 1 8.2758 0.6545 -1.0608 26 1 8.6028 2.8256 -0.0310 27 1 8.7552 0.8116 1.3112 28 6 3.4235 1.2776 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2038 2.3109 0.0005 33 1 1.2873 4.5117 0.0019 34 1 5.2341 4.5733 1.6609 35 1 6.3199 6.7799 1.6575 36 1 4.7787 10.6559 0.7229 37 1 4.4608 9.1926 1.7010 38 1 6.3332 11.1457 2.4031 39 1 6.4491 9.4334 2.9211 40 1 7.7724 10.7879 0.5036 41 1 8.5281 9.7207 1.7292 42 1 7.4377 7.8741 0.8409 43 1 3.8608 8.0074 -1.6066 44 1 2.7674 5.8046 -1.6264 45 1 6.1882 -0.0696 1.6538 46 1 4.0097 0.3706 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245359217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:15 Heat of formation + Delta-G solvation = 0.173230 kcal Electronic energy + Delta-G solvation = -26589.837404 eV Core-core repulsion = 23022.466585 eV Total energy + Delta-G solvation = -3567.370819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.64016 -38.78416 -37.65189 -36.08611 -33.65582 -31.82854 -30.53990 -29.89200 -29.62080 -29.13224 -27.34059 -25.83903 -25.21245 -22.86345 -21.93651 -21.39332 -20.75052 -20.23527 -19.43217 -17.77781 -16.92366 -16.17073 -15.60368 -15.38829 -15.20179 -14.87341 -14.77045 -14.53212 -14.19852 -13.68786 -13.43601 -13.25582 -12.91439 -12.89412 -12.73267 -12.42965 -12.29035 -11.83255 -11.72891 -11.46561 -11.38626 -11.22376 -11.21193 -11.12551 -11.06146 -10.82446 -10.60072 -10.36283 -10.34642 -10.00322 -9.75134 -9.58065 -9.22817 -8.68730 -8.27694 -7.94616 -7.53885 -6.95256 -6.64503 -4.47263 1.83370 2.09339 2.72168 2.97761 3.05046 3.09463 3.17501 3.87766 4.20812 4.28055 4.50070 4.57526 4.70189 4.73761 5.00520 5.14823 5.40464 5.42976 5.44346 5.52702 5.58063 5.63422 5.71392 5.73923 5.79530 5.85617 5.86830 5.90570 5.95192 6.08270 6.10960 6.19087 6.30912 6.34960 6.63493 6.70801 6.77669 6.80297 6.96913 7.04666 7.14630 7.18458 7.36234 7.38995 7.44278 7.63015 7.66730 7.79537 7.94146 8.01568 8.32335 8.68753 8.77578 8.85325 10.07309 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.003881 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.415928 B = 7213.632846 C = 9069.600700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.133 3.867 4 C -0.317 4.317 5 C -0.041 4.041 6 C -0.208 4.208 7 C 0.026 3.974 8 C -0.093 4.093 9 C -0.122 4.122 10 C -0.117 4.117 11 C 0.120 3.880 12 H 0.086 0.914 13 C -0.143 4.143 14 C -0.158 4.158 15 C 0.040 3.960 16 N -0.671 5.671 17 C -0.114 4.114 18 C -0.129 4.129 19 C 0.155 3.845 20 C -0.445 4.445 21 H 0.087 0.913 22 C 0.076 3.924 23 N -0.780 5.780 24 Si 0.905 3.095 25 H -0.266 1.266 26 H -0.258 1.258 27 H -0.277 1.277 28 C -0.194 4.194 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.343 0.657 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.283 0.717 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 10.840 0.658 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.089 3.911 4 C -0.337 4.337 5 C -0.059 4.059 6 C -0.209 4.209 7 C 0.026 3.974 8 C -0.111 4.111 9 C -0.141 4.141 10 C -0.117 4.117 11 C 0.011 3.989 12 H 0.104 0.896 13 C -0.182 4.182 14 C -0.197 4.197 15 C -0.090 4.090 16 N -0.301 5.301 17 C -0.133 4.133 18 C -0.148 4.148 19 C 0.152 3.848 20 C -0.473 4.473 21 H 0.105 0.895 22 C -0.144 4.144 23 N -0.404 5.404 24 Si 0.729 3.271 25 H -0.191 1.191 26 H -0.182 1.182 27 H -0.202 1.202 28 C -0.214 4.214 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.094 0.906 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.356 10.660 0.160 10.667 hybrid contribution -0.011 -0.217 0.827 0.855 sum -0.367 10.443 0.987 10.496 Atomic orbital electron populations 1.22759 0.80766 1.01876 1.00517 1.86007 1.19512 1.29107 1.89728 1.19023 0.92493 0.82480 0.97087 1.20360 0.97336 0.92501 1.23520 1.20331 0.93291 0.95244 0.97022 1.18572 0.92064 0.91239 1.19060 1.18807 0.93627 0.92502 0.92482 1.21390 0.95661 0.95477 0.98607 1.20654 1.00329 0.93973 0.99118 1.19681 0.98931 0.94947 0.98161 1.21193 0.86477 0.92681 0.98579 0.89629 1.22877 0.98368 0.99856 0.97147 1.23120 0.96063 1.01765 0.98772 1.23116 0.96893 0.94771 0.94181 1.62913 1.16106 1.05121 1.45993 1.20676 0.97208 0.96799 0.98598 1.21260 1.00922 0.93342 0.99244 1.17222 0.92778 0.88873 0.85883 1.19606 0.90972 1.03069 1.33665 0.89511 1.25985 1.01389 0.94290 0.92719 1.69815 1.38596 1.10524 1.21451 0.86334 0.81707 0.79986 0.79052 1.19111 1.18181 1.20204 1.20580 0.89338 0.99245 1.12209 0.93664 0.93697 0.89904 0.88589 0.88915 0.85307 0.87558 0.91453 0.90922 0.91190 0.91518 0.90433 0.90955 0.83785 0.87191 0.86785 0.90569 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.19 10.48 -19.35 -0.20 -7.39 16 3 C 0.13 3.19 6.67 -39.24 -0.26 2.92 16 4 C -0.32 -6.99 9.02 -39.23 -0.35 -7.35 16 5 C -0.04 -0.89 9.48 -39.34 -0.37 -1.26 16 6 C -0.21 -4.86 5.53 -104.22 -0.58 -5.43 16 7 C 0.03 0.54 4.91 -104.90 -0.52 0.03 16 8 C -0.09 -1.86 7.99 -39.17 -0.31 -2.17 16 9 C -0.12 -2.07 8.96 -39.64 -0.36 -2.42 16 10 C -0.12 -1.83 4.76 -104.50 -0.50 -2.32 16 11 C 0.12 1.58 3.62 -67.80 -0.25 1.33 16 12 H 0.09 1.11 8.03 -51.93 -0.42 0.70 16 13 C -0.14 -1.62 6.56 -25.38 -0.17 -1.78 16 14 C -0.16 -1.56 7.06 -24.87 -0.18 -1.73 16 15 C 0.04 0.41 7.55 -1.90 -0.01 0.40 16 16 N -0.67 -8.72 7.39 -104.34 -0.77 -9.49 16 17 C -0.11 -1.84 9.66 -39.64 -0.38 -2.23 16 18 C -0.13 -2.38 9.51 -39.16 -0.37 -2.75 16 19 C 0.16 3.97 5.56 -106.58 -0.59 3.38 16 20 C -0.44 -11.14 7.14 -37.90 -0.27 -11.42 16 21 H 0.09 2.16 6.60 -52.49 -0.35 1.81 16 22 C 0.08 1.83 5.18 -17.32 -0.09 1.74 16 23 N -0.78 -19.49 10.90 55.55 0.61 -18.89 16 24 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 28 C -0.19 -5.04 8.60 -38.79 -0.33 -5.38 16 29 H 0.04 0.69 7.64 -51.93 -0.40 0.29 16 30 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.85 6.25 -52.48 -0.33 1.53 16 33 H 0.09 1.80 8.03 -52.49 -0.42 1.38 16 34 H 0.13 2.75 7.32 -52.49 -0.38 2.36 16 35 H 0.11 1.58 6.55 -52.48 -0.34 1.24 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.34 4.58 6.17 -39.29 -0.24 4.34 16 43 H 0.11 1.50 8.05 -52.49 -0.42 1.08 16 44 H 0.11 1.98 8.04 -52.48 -0.42 1.55 16 45 H 0.28 6.47 8.29 -40.82 -0.34 6.14 16 46 H 0.13 3.51 6.17 -52.49 -0.32 3.19 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -27.16 368.56 -11.26 -38.42 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.51 Total: 13.43 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -4.90 Total: -34.87 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: -0.17 Total: -28.38 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.20 Total: -7.39 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.16 -11.26 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245359217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.592 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds